View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11557A_low_98 (Length: 340)

Name: NF11557A_low_98
Description: NF11557A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11557A_low_98
NF11557A_low_98
[»] chr1 (1 HSPs)
chr1 (23-327)||(7263709-7264004)


Alignment Details
Target: chr1 (Bit Score: 162; Significance: 2e-86; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 23 - 327
Target Start/End: Original strand, 7263709 - 7264004
Alignment:
Q  23 aaaaattgaatagtcgagcatgtacgaaaaattctagttagcatgagaatatcatccaacaataatcaactctannnnnnnnnnnnaataatatggcatg 122  Q
    ||||| |||||||| |||| |||||||||| || ||||||| |||| |||||||||||||||||||||||||||            |||||||||| |||    
T  7263709 aaaaagtgaatagttgagcttgtacgaaaatttttagttagaatgaaaatatcatccaacaataatcaactctatttttgttttttaataatatgggatg 7263808  T
Q  123 attgggtcaagatagttcaacggttctattaaaaagttgtgttattgaaagggttaaatatgtgtaaaccaatgcagattgatctagtgagaggaagaaa 222  Q
    ||||| |||||||||||||||||||||||||||||| |||||||||||||        ||||| ||||||||||||||||||||||||||||||||||||    
T  7263809 attggatcaagatagttcaacggttctattaaaaagctgtgttattgaaa--------tatgtataaaccaatgcagattgatctagtgagaggaagaaa 7263900  T
Q  223 aagactcttaacgtaattattctatgaatcatgctaagagcacaaattaaaaaggtaaaatcgaatgaaatgataagatttgtgc-tgaaacgataaatt 321  Q
    ||||||  |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||  | ||||||||||||||    
T  7263901 aagact--taacgtaattattctatgaatcgtgctaagagcacaaattaaaaaggtaaaatcgaatgaaatgataaaatttgcacttgaaacgataaatt 7263998  T

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