View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11557_high_1 (Length: 763)
Name: NF11557_high_1
Description: NF11557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11557_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-129; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 3544586 - 3544344
Alignment:
| Q |
1 |
gcactcgatcgtgtcctagatatgctcactgatagagcagttatcgttagttgtcgctcgctttggccaatcacactcgcataccccatgagacattgaa |
100 |
Q |
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| T |
3544586 |
gcactcgatcgtgtcctagatatgctcactgatagagcagttatcgttagttgtcgctcgctttggccaatcacactcgcataccccatgagacattgaa |
3544487 |
T |
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| Q |
101 |
cacataaaacaggatagcgagtagctctgcatgaggacttgatgaactctgacggggttatagaggattctgcagtgacaagactcatgaagaccagcaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3544486 |
cacataaaacaggatagcgagtagctctgcatgaggacctgatgaactctgacggggttatagaggattctgcagtgacaagactcatgaagaccagcaa |
3544387 |
T |
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| Q |
201 |
ataaaccccggctctagccgccatgtttactagcaatgtagtg |
243 |
Q |
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| T |
3544386 |
ataaaccccggctctagccgccatgtttactagcaatatagtg |
3544344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 312 - 569
Target Start/End: Complemental strand, 3544283 - 3544026
Alignment:
| Q |
312 |
ggaaataggactgtagaaagtgggagacatgtattattgtatctatatgtgactgtgaatggattgctaccgtatcccactttctttttnnnnnnnggaa |
411 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
3544283 |
ggaaataggactgtaggaagtgggagacatgtattattgtatctatatgtgactgtgaatggattgctaccgtatcccactttcttttttaaaaaaggaa |
3544184 |
T |
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| Q |
412 |
aatattggcaggttatctttaaatttattaatatattcttttgaagatatcgcttcttttttgacaagttttaaagataaagcaacttttgttgacatgt |
511 |
Q |
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| T |
3544183 |
aatattggcaggttatctttaaatttattaatatattcttttgaagatatcgcttcttttttgacaagttttaaagataaagcaacttttgttgacatgt |
3544084 |
T |
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| Q |
512 |
tttaagtggcactgctttcccttgnnnnnnntctgcttagccgcatcctcccagtggt |
569 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||| |||||| |
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| T |
3544083 |
tttaagtggcactgctttcccttgaaaaaaatctgcttagccgcatcctcctagtggt |
3544026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 659 - 746
Target Start/End: Complemental strand, 3543977 - 3543890
Alignment:
| Q |
659 |
actcaataaaatttaacattctatctaatatgtcaatgtaaacccactactaccacttagtataattcatcatccatcaagctgatgt |
746 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |
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| T |
3543977 |
actcaataaaatttaacattctatctaatttgtcaatgtaaacccacaactaccacttagtataattcatcatccatcaagcttatgt |
3543890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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