View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11557_high_12 (Length: 283)
Name: NF11557_high_12
Description: NF11557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11557_high_12 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 14 - 275
Target Start/End: Original strand, 3317040 - 3317300
Alignment:
| Q |
14 |
atatatacacagacatcaaccatgatataaatttgtaggaaaatgaccaagatatttgtgctgctatgtcttctcttaatataaacccaaatcccaatcg |
113 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3317040 |
atatatacacagacatcatccatgatataaatttgtaggaaaatgaccaagatatttgtgctgctatgtcttctcttaatataaacccaaatcccaatcg |
3317139 |
T |
|
| Q |
114 |
atttgatcaaaaatcaaactacacctacctgtaattctcagatcactcaaaaagtttgttttctttaattttgatgtgcatctcataggctgataaggtt |
213 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
3317140 |
atttgatcaaaaatcaaactacaccaacctgtaattctcagatcactcgaaaagtttgttttctttaattttgatgtgcatctcataggctgatagggtt |
3317239 |
T |
|
| Q |
214 |
tacgtcatcttcttgtgtttctctaatcattttatgtttattttagatttttggcctttgct |
275 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
3317240 |
tacgtc-tcttcttgtgtttctctaatcattttatgtttattttagatttttggcttttgct |
3317300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 38 - 90
Target Start/End: Original strand, 3313635 - 3313687
Alignment:
| Q |
38 |
atataaatttgtaggaaaatgaccaagatatttgtgctgctatgtcttctctt |
90 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| ||||||||||||| |
|
|
| T |
3313635 |
atataaatttgtaggaaaatgaccaagatatttatgctattatgtcttctctt |
3313687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 38 - 90
Target Start/End: Original strand, 3320342 - 3320394
Alignment:
| Q |
38 |
atataaatttgtaggaaaatgaccaagatatttgtgctgctatgtcttctctt |
90 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| ||||||||||||| |
|
|
| T |
3320342 |
atataaatttgtaggaaaatgaccaagatatttatgctattatgtcttctctt |
3320394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University