View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11557_high_14 (Length: 277)
Name: NF11557_high_14
Description: NF11557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11557_high_14 |
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| [»] chr5 (5 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 277; Significance: 1e-155; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 11731713 - 11731989
Alignment:
| Q |
1 |
agttgaagaaggaatgctgcgagcttcgtttgattttggtttggatctttcgtgtgggattccagattcgatgtttatagcaaagaaactgaggaccatt |
100 |
Q |
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| T |
11731713 |
agttgaagaaggaatgctgcgagcttcgtttgattttggtttggatctttcgtgtgggattccagattcgatgtttatagcaaagaaactgaggaccatt |
11731812 |
T |
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| Q |
101 |
ttattgccatacaaaaacattaacaaccctcggcttccacacgaggtgaagatgacgacgccaacctgtgataagatcttcaacaccttcaagtccatgc |
200 |
Q |
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| T |
11731813 |
ttattgccatacaaaaacattaacaaccctcggcttccacacgaggtgaagatgacgacgccaacctgtgataagatcttcaacaccttcaagtccatgc |
11731912 |
T |
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| Q |
201 |
acgtgttggatctacatgacttggggatcaagattgtaccaacctctattgaggagatgaaatacttgaggtttcta |
277 |
Q |
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| T |
11731913 |
acgtgttggatctacatgacttggggatcaagattgtaccaacctctattgaggagatgaaatacttgaggtttcta |
11731989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 11 - 277
Target Start/End: Complemental strand, 11902479 - 11902213
Alignment:
| Q |
11 |
ggaatgctgcgagcttcgtttgattttggtttggatctttcgtgtgggattccagattcgatgtt---tatagcaaagaaactgaggaccattttattgc |
107 |
Q |
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| T |
11902479 |
ggaatgttgcgagcttcatttgattttgctttggatctgtcatgtgggatcccagacttgttgttcgataaagcaaagaaactgagaaccattcttttgc |
11902380 |
T |
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| Q |
108 |
catacaaaaacattaacaaccctcggcttccacacgaggtgaagatgacgacgccaacctgtgataagatcttcaacaccttcaagtccatgcacgtgtt |
207 |
Q |
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| T |
11902379 |
cgtacag---cactaacaaccctcgccttccacacgaggtgaagatgacaacatcaacatgcgataagatcttcaacaccttcaagtccctacgtgtgct |
11902283 |
T |
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| Q |
208 |
ggatctacatgacttggggatcaagattgtaccaacctctattgaggagatgaaatacttgaggtttcta |
277 |
Q |
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| T |
11902282 |
ggatctacatgacttggggattaagatggttccaacatctattgaggaggtgaagtacttgaggtatcta |
11902213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 16 - 277
Target Start/End: Original strand, 11827945 - 11828209
Alignment:
| Q |
16 |
gctgcgagcttcgtttgattttggtttggatctttcgtgtgggattccagattcgatgttt---atagcaaagaaactgaggaccattttattgccatac |
112 |
Q |
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| T |
11827945 |
gctgcgagtttcgttcaattttgctttagatctttcatgtgagatccctgattcggtgtttcagacagcaaagaaactaaggaccattcttttgccatac |
11828044 |
T |
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| Q |
113 |
aaaaacattaacaaccctcggcttccacacgaggtgaagatgacgacgccaacctgtgataagatcttcaacaccttcaag---tccatgcacgtgttgg |
209 |
Q |
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| T |
11828045 |
aa---cattaacaaccctcgtcttccgcacgaggtaaagatgacaacgtcaacttgtgataagatcttcgacaccttcaagtactcgctacgcgtgttgg |
11828141 |
T |
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| Q |
210 |
atctacatgacttggggatcaagattgtaccaacctctattgaggagatgaaatacttgaggtttcta |
277 |
Q |
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| T |
11828142 |
atctacatgacttggggatcaagacagttccaagctctattgaggatgtgaagtacttgaggtatcta |
11828209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 6 - 277
Target Start/End: Original strand, 11860070 - 11860344
Alignment:
| Q |
6 |
aagaaggaatgctgcgagcttcgtttgattttggtttggatctttcgtgtgggattccagattcgatgttt---atagcaaagaaactgaggaccatttt |
102 |
Q |
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|||| ||||||||||||| |||||| ||||||| ||| |||||||| |||| ||| || |||| | ||||| | |||||||||||| |||||| || | |
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| T |
11860070 |
aagatggaatgctgcgagtttcgttcgattttgctttagatctttcatgtgagatccctgatttggtgtttcagaaagcaaagaaactaaggacctttct |
11860169 |
T |
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| Q |
103 |
attgccatacaaaaacattaacaaccctcggcttccacacgaggtgaagatgacgacgccaacctgtgataagatcttcaacaccttcaag---tccatg |
199 |
Q |
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| T |
11860170 |
tttgccatacaa---cattaacaaccctcggcttccgtacgaggtaaaggtgacaacatcaacttgtgataagatcttcgacaccttcaagtgctcgcta |
11860266 |
T |
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| Q |
200 |
cacgtgttggatctacatgacttggggatcaagattgtaccaacctctattgaggagatgaaatacttgaggtttcta |
277 |
Q |
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| T |
11860267 |
cgcgtgttggatctacatgatttggggatcaagacggttccgagctctattgaggatgtgaagtacttgaggtatcta |
11860344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 11 - 277
Target Start/End: Original strand, 12038843 - 12039109
Alignment:
| Q |
11 |
ggaatgctgcgagcttcgtttgattttggtttggatctttcgtgtgggattccagattcgatgttt---atagcaaagaaactgaggaccattttattgc |
107 |
Q |
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| T |
12038843 |
ggaatgctacgagtttcgtttgattatgctttagatttgttgtgtgggatcccagattgtgtgtttgagaaagctaaaaaactgaggaccattcttttgc |
12038942 |
T |
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| Q |
108 |
catacaaaaacattaacaaccctcggcttccacacgaggtgaagatgacgacgccaacctgtgataagatcttcaacaccttcaagtccatgcacgtgtt |
207 |
Q |
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| T |
12038943 |
catacaa---cactgacaaccctcggcttcctgacgaggtacagatgacaacatcaacctgtgataagatctttaacaccttcaaagctatgcgcgtgtt |
12039039 |
T |
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| Q |
208 |
ggatctacatgacttggggatcaagattgtaccaacctctattgaggagatgaaatacttgaggtttcta |
277 |
Q |
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| T |
12039040 |
agatatgcatgacttggggatcaagacgattccgagctctattgaagaggtgaagtacttgaggtatcta |
12039109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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