View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11557_high_18 (Length: 241)
Name: NF11557_high_18
Description: NF11557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11557_high_18 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 18 - 241
Target Start/End: Original strand, 43161891 - 43162114
Alignment:
| Q |
18 |
agcatgtcagtcagaatatggttggatggcacttatatatacatcacatagtcctttcctgccccatttcaaccgatcaactaccaaagttggttcaagt |
117 |
Q |
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| T |
43161891 |
agcatgtcagtcagaatatggttggatggcacttatatatacatcacatagtcctttcctgccccatttcaaccgatcaactaccaaagttggttcaagt |
43161990 |
T |
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| Q |
118 |
gaggatgacatttcatgttgccattatctctttctgttttcatactagattcttcttttctgtcacatgttggcatattgcatgtttctccaaaaatcca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43161991 |
gaggatgacatttcatgttgccattatctctttctgttttcatactagattcttcttttctgtcacatgttggcatattgcatgtttctccaaaaatcca |
43162090 |
T |
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| Q |
218 |
agcaccacttccatctttatcact |
241 |
Q |
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|||||||||||||||||||||||| |
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| T |
43162091 |
agcaccacttccatctttatcact |
43162114 |
T |
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