View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11557_high_2 (Length: 594)

Name: NF11557_high_2
Description: NF11557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11557_high_2
NF11557_high_2
[»] chr3 (2 HSPs)
chr3 (15-380)||(12700443-12700825)
chr3 (227-362)||(47615259-47615394)
[»] chr5 (4 HSPs)
chr5 (15-380)||(19753180-19753562)
chr5 (227-362)||(18486586-18486721)
chr5 (257-338)||(25523336-25523412)
chr5 (289-341)||(32639908-32639960)
[»] chr7 (2 HSPs)
chr7 (227-362)||(7500733-7500868)
chr7 (16-94)||(41740512-41740590)
[»] chr8 (4 HSPs)
chr8 (15-160)||(23169479-23169624)
chr8 (196-321)||(23169626-23169751)
chr8 (227-362)||(10007451-10007592)
chr8 (303-362)||(23169751-23169810)
[»] chr6 (1 HSPs)
chr6 (227-362)||(7315987-7316122)
[»] chr4 (2 HSPs)
chr4 (286-338)||(12129889-12129941)
chr4 (257-338)||(8156534-8156610)
[»] chr1 (3 HSPs)
chr1 (286-338)||(7675279-7675331)
chr1 (257-341)||(39222238-39222317)
chr1 (257-327)||(36613124-36613189)


Alignment Details
Target: chr3 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 15 - 380
Target Start/End: Complemental strand, 12700825 - 12700443
Alignment:
Q  15 gctagaaagcctagagagcaaaacagaaccagcaacaacaggcataatgttaggccaaaaaactccccccaaccgtatcaactctgcggctacagaacca 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||    
T  12700825 gctagaaagcctagagagcaaaacagaaccagcaacaacaggcataatgttaggccaaaaaactccccccaaccatatcaactctgcggccacagaacca 12700726  T
Q  115 caaagcctca--------------aacacgccttagccacgcacaagaacacgcctatatatttaatatggaagaagctcctctcagatccatatggggt 200  Q
    ||||||||||              ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12700725 caaagcctcatacctcaagcctcaaacacgccttagctacgcacaagaacacgcctatatatttaatatggaagaagctcctctcagatccatatggggt 12700626  T
Q  201 tgtagacatgtagctactatggagtacttgggggttttgttgggaaggtgatgggttcaagaggaagaaga---agaaatcattggaatggaaggtggtg 297  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||| ||||||||||||||||||||    
T  12700625 tgtagacttgtagctactatggagtacttgggggttttgttgggaaggtgatgggttcaagaggaagaagaagaagaaaccattggaatggaaggtggtg 12700526  T
Q  298 ctggtggctggggttagtagagagaaagaatggagattgaaccaagcaaacacatagattggaagggaagaagccattggaag 380  Q
    |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  12700525 ctggtggctggggttagtagagagaaagaagggagattgaaccaaccaaacacatagattggaagggaagaagccattggaag 12700443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 227 - 362
Target Start/End: Original strand, 47615259 - 47615394
Alignment:
Q  227 cttgggggttttgttgggaaggtgatgggttcaagaggaagaagaagaaatcattggaatggaaggtggtgctggtggctggggttagtagagagaaaga 326  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  47615259 cttgggggttttgttgggaaggtgatgggttcaagaggaagaagaagaaaccattggaatggaaggtggtgctggtggctggggttagtagagagaaaga 47615358  T
Q  327 atggagattgaaccaagcaaacacatagattggaag 362  Q
    | |||||||||||||||   ||||||||||||||||    
T  47615359 agggagattgaaccaaggttacacatagattggaag 47615394  T

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Target: chr5 (Bit Score: 267; Significance: 1e-149; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 15 - 380
Target Start/End: Complemental strand, 19753562 - 19753180
Alignment:
Q  15 gctagaaagcctagagagcaaaacagaaccagcaacaacaggcataatgttaggccaaaaaactccccccaaccgtatcaactctgcggctacagaacca 114  Q
    ||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  19753562 gctagaaagtctaaagagcaaaacagaaccagcaacaacaggcatagtgttaggccaaaaaactccccccaaccgtatcaactctgcggccacagaacca 19753463  T
Q  115 caaagcctca--------------aacacgccttagccacgcacaagaacacgcctatatatttaatatggaagaagctcctctcagatccatatggggt 200  Q
    ||||||||||              ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19753462 caaagcctcatacctcaagcctcaaacacgccttagcgacgcacaagaacacgcctatatatttaatatggaagaagctcctctcagatccatatggggt 19753363  T
Q  201 tgtagacatgtagctactatggagtacttg-ggggttttgttgggaaggtgatgggttcaagag---gaagaagaagaaatcattggaatggaaggtggt 296  Q
    ||||||| |||||||||||||||||||||| |||||||||||||||||||||| ||||||||||   ||||||||||||| |||||||||||||||||||    
T  19753362 tgtagacttgtagctactatggagtacttggggggttttgttgggaaggtgat-ggttcaagaggaagaagaagaagaaaccattggaatggaaggtggt 19753264  T
Q  297 gctggtggctggggttagtagagagaaagaatggagattgaaccaagcaaacacatagattggaagggaagaagccattggaag 380  Q
     |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  19753263 actggtggctggggttagtagagagaaagaagggagattgaaccaaccaaacacatagattggaagggaagaagccattggaag 19753180  T

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Target: chr5; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 227 - 362
Target Start/End: Original strand, 18486586 - 18486721
Alignment:
Q  227 cttgggggttttgttgggaaggtgatgggttcaagaggaagaagaagaaatcattggaatggaaggtggtgctggtggctggggttagtagagagaaaga 326  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  18486586 cttgggggttttgttgggaaggtgatgggttcaagaggaagaagaagaaaccattggaatggaaggtggtgctggtggctggggttagtagagagaaaga 18486685  T
Q  327 atggagattgaaccaagcaaacacatagattggaag 362  Q
    | |||||||||||||||   ||||||||||||||||    
T  18486686 agggagattgaaccaaggttacacatagattggaag 18486721  T

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Target: chr5; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 257 - 338
Target Start/End: Complemental strand, 25523412 - 25523336
Alignment:
Q  257 tcaagaggaagaagaagaaatcattggaatggaaggtggtgctggtggctggggttagtagagagaaagaatggagattgaa 338  Q
    |||||||||||||||||||  |||     |||||||||||| ||||||||||||||||||||||||||||| ||||||||||    
T  25523412 tcaagaggaagaagaagaagccat-----tggaaggtggtgttggtggctggggttagtagagagaaagaagggagattgaa 25523336  T

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Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 289 - 341
Target Start/End: Complemental strand, 32639960 - 32639908
Alignment:
Q  289 aaggtggtgctggtggctggggttagtagagagaaagaatggagattgaacca 341  Q
    |||||| || ||||||||||||||||||||||||||||| |||||||||||||    
T  32639960 aaggtgatgttggtggctggggttagtagagagaaagaagggagattgaacca 32639908  T

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Target: chr7 (Bit Score: 116; Significance: 1e-58; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 227 - 362
Target Start/End: Complemental strand, 7500868 - 7500733
Alignment:
Q  227 cttgggggttttgttgggaaggtgatgggttcaagaggaagaagaagaaatcattggaatggaaggtggtgctggtggctggggttagtagagagaaaga 326  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  7500868 cttgggggttttgttgggaaggtgatgggttcaagaggaagaagaagaaaccattggaatggaaggtggtgctggtggctggggttagtagagagaaaga 7500769  T
Q  327 atggagattgaaccaagcaaacacatagattggaag 362  Q
    | |||||||||||||||   ||||||||||||||||    
T  7500768 agggagattgaaccaaggttacacatagattggaag 7500733  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 16 - 94
Target Start/End: Complemental strand, 41740590 - 41740512
Alignment:
Q  16 ctagaaagcctagagagcaaaacagaaccagcaacaacaggcataatgttaggccaaaaaactccccccaaccgtatca 94  Q
    |||||| ||||||| | ||||| |||||||||||||| |||||   |||||||||||||||   ||| |||||||||||    
T  41740590 ctagaatgcctagaaatcaaaatagaaccagcaacaataggcaacctgttaggccaaaaaaaatcccgcaaccgtatca 41740512  T

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Target: chr8 (Bit Score: 114; Significance: 2e-57; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 15 - 160
Target Start/End: Original strand, 23169479 - 23169624
Alignment:
Q  15 gctagaaagcctagagagcaaaacagaaccagcaacaacaggcataatgttaggccaaaaaactccccccaaccgtatcaactctgcggctacagaacca 114  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |||||||||||||||||||||| |||||||||    
T  23169479 gctagaatgcctagagagcaaaacagaaccagcaacaacaggcatagtattaggccaaaaaactccctccaaccgtatcaactctgcggccacagaacca 23169578  T
Q  115 caaagcctcaaacacgccttagccacgcacaagaacacgcctatat 160  Q
    | |||||||||||||||||||||||||| |||| ||||||||||||    
T  23169579 cgaagcctcaaacacgccttagccacgctcaagtacacgcctatat 23169624  T

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Target: chr8; HSP #2
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 196 - 321
Target Start/End: Original strand, 23169626 - 23169751
Alignment:
Q  196 ggggttgtagacatgtagctactatggagtacttgggggttttgttgggaaggtgatgggttcaagaggaagaagaagaaatcattggaatggaaggtgg 295  Q
    |||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  23169626 ggggttgtagacttgtagctactatggagtacttgagggttttgttgggaaggtgatgggttcaagaggaagaagaagaagccattggaatggaaggtgg 23169725  T
Q  296 tgctggtggctggggttagtagagag 321  Q
    ||| ||||||||||||||||||||||    
T  23169726 tgccggtggctggggttagtagagag 23169751  T

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Target: chr8; HSP #3
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 227 - 362
Target Start/End: Original strand, 10007451 - 10007592
Alignment:
Q  227 cttgggggttttgttgggaaggtgatgggttcaagaggaag------aagaagaaatcattggaatggaaggtggtgctggtggctggggttagtagaga 320  Q
    |||||||||||||||||||||||||||||||||||||||||      ||||||||  ||||||||||||||||||||||||||||||||||||||| |||    
T  10007451 cttgggggttttgttgggaaggtgatgggttcaagaggaagaagaagaagaagaagccattggaatggaaggtggtgctggtggctggggttagtaaaga 10007550  T
Q  321 gaaagaatggagattgaaccaagcaaacacatagattggaag 362  Q
    ||||||| |||||||||||||||   ||||||||||||||||    
T  10007551 gaaagaagggagattgaaccaaggttacacatagattggaag 10007592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 303 - 362
Target Start/End: Original strand, 23169751 - 23169810
Alignment:
Q  303 ggctggggttagtagagagaaagaatggagattgaaccaagcaaacacatagattggaag 362  Q
    ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||    
T  23169751 ggctggggttagtagagagaaagaagggagattgaaccaaccaaacacatagattggaag 23169810  T

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Target: chr6 (Bit Score: 104; Significance: 1e-51; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 227 - 362
Target Start/End: Original strand, 7315987 - 7316122
Alignment:
Q  227 cttgggggttttgttgggaaggtgatgggttcaagaggaagaagaagaaatcattggaatggaaggtggtgctggtggctggggttagtagagagaaaga 326  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||  |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  7315987 cttgggggtttttttgggaaggtgatgggttcaagaggaagaagaagaagccattggaatggatggtggtgctggtggctggggttagtagagagaaaga 7316086  T
Q  327 atggagattgaaccaagcaaacacatagattggaag 362  Q
    | |||||||||||||||   ||||||||||||||||    
T  7316087 agggagattgaaccaaggttacacatagattggaag 7316122  T

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Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 286 - 338
Target Start/End: Complemental strand, 12129941 - 12129889
Alignment:
Q  286 tggaaggtggtgctggtggctggggttagtagagagaaagaatggagattgaa 338  Q
    |||||||||||| ||||||||||||||||||||||||||||| ||||||||||    
T  12129941 tggaaggtggtgttggtggctggggttagtagagagaaagaagggagattgaa 12129889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 257 - 338
Target Start/End: Original strand, 8156534 - 8156610
Alignment:
Q  257 tcaagaggaagaagaagaaatcattggaatggaaggtggtgctggtggctggggttagtagagagaaagaatggagattgaa 338  Q
    |||||||||||||||||||  |||     |||||||||| | ||||||||||||||||||||||||||||| ||||||||||    
T  8156534 tcaagaggaagaagaagaagccat-----tggaaggtggggttggtggctggggttagtagagagaaagaagggagattgaa 8156610  T

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Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 286 - 338
Target Start/End: Original strand, 7675279 - 7675331
Alignment:
Q  286 tggaaggtggtgctggtggctggggttagtagagagaaagaatggagattgaa 338  Q
    |||||||||||| ||||||||||||||||||||||||||||| ||||||||||    
T  7675279 tggaaggtggtgttggtggctggggttagtagagagaaagaagggagattgaa 7675331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 257 - 341
Target Start/End: Original strand, 39222238 - 39222317
Alignment:
Q  257 tcaagaggaagaagaagaaatcattggaatggaaggtggtgctggtggctggggttagtagagagaaagaatggagattgaacca 341  Q
    |||||||||||||||||||  |||     |||||||||||| |||||||||||||||||||||||||||||  ||||||||||||    
T  39222238 tcaagaggaagaagaagaagccat-----tggaaggtggtgttggtggctggggttagtagagagaaagaagagagattgaacca 39222317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 257 - 327
Target Start/End: Complemental strand, 36613189 - 36613124
Alignment:
Q  257 tcaagaggaagaagaagaaatcattggaatggaaggtggtgctggtggctggggttagtagagagaaagaa 327  Q
    |||||||||||||||||||  |||     |||||||||||| |||||||||||||||||||||||||||||    
T  36613189 tcaagaggaagaagaagaagccat-----tggaaggtggtgttggtggctggggttagtagagagaaagaa 36613124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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