View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11557_high_3 (Length: 493)
Name: NF11557_high_3
Description: NF11557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11557_high_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 11 - 478
Target Start/End: Complemental strand, 48021053 - 48020592
Alignment:
| Q |
11 |
caaaggtcgcgagcttaaaaacaaaacaaaactatttatctacaagtatatgctacaatggctattaatatcaccacctaagatttgcacaccaacttag |
110 |
Q |
| |
|
|||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48021053 |
caaaggtcgcgagcttaacaacaaaactaaactatttatctacaagtatatgctacaatggctattaatatcaccacctaagatttgcacaccaacttag |
48020954 |
T |
|
| Q |
111 |
attgtgcaatgacaagcagtgctgtgaaagagcagctctataacgctacagtttagtaggatttaaacaaaccaccactgttctgcaatacaccatctag |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
48020953 |
attgtgcaatgacaagcagtgctgtgaaagagcagctctataacgctacagtttagtaggatttaaacaaaccactactgttctgcaatacaccatctag |
48020854 |
T |
|
| Q |
211 |
tacattgtagttatagaacagtagtatagcggaacatgaacaaaccgctgnnnnnnnaaatccacggttgataacatgataacaacaatttattcacagg |
310 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |
|
|
| T |
48020853 |
tacatcgtagttatagaacagtagtatagcggaacatgaacaaaccgctgtttttttaaatccacggt--------tgataacaacaatttattcacagg |
48020762 |
T |
|
| Q |
311 |
at--tcagctggtacttgagatatactaacccttaaaagaccaatcaaaatgacaatgagcaatataaataaaagatcaagcatgtgtaatcataaacta |
408 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48020761 |
ataatcagctggtacttgagatatactaacccttaaaagatcaatcaaaatgacaatgagcaatataaataaaagatcaagcatgtgtaatcataaacta |
48020662 |
T |
|
| Q |
409 |
aaaacatcatagcaactttcaaaaccagctgaatgataagtgcaatacaacaaacatgaaatgttacatt |
478 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48020661 |
aaaacatcatagtaactttcaaaaccagctgaatgataagtgcaatacaacaaacatgaaatgttacatt |
48020592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University