View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11557_high_5 (Length: 364)
Name: NF11557_high_5
Description: NF11557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11557_high_5 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 186; Significance: 1e-100; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 171 - 364
Target Start/End: Original strand, 4884861 - 4885054
Alignment:
| Q |
171 |
caaccgttatagatgatttgttggtgactcagaaatactctccaaatgaggtctccacacagcaacacgtcctcttcttctatctctctgactacaaacc |
270 |
Q |
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| T |
4884861 |
caaccgttatagatgatttgttggtgactcagaaatactctccaaatgaggtctccacacagcaacacgtcctcttcttctgtctctctgactacaaacc |
4884960 |
T |
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| Q |
271 |
ttctcagacagaatctcagtcaagtactgatcagaagacacaaccaacgtagcactgttctcgatgttgttgttactgttactgttaccgttac |
364 |
Q |
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| T |
4884961 |
ttctcagacagaatctcagtcaagtactgatcagaagaaacaaccaacgtagcactgttctcgatgttgttgttactgttactgttaccgttac |
4885054 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 14 - 50
Target Start/End: Original strand, 4884703 - 4884739
Alignment:
| Q |
14 |
caaaattgacagaaacaaagtttattttcttctttac |
50 |
Q |
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| T |
4884703 |
caaaattgacagaaacaaagtttattttcttctttac |
4884739 |
T |
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