View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11557_low_10 (Length: 284)
Name: NF11557_low_10
Description: NF11557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11557_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 258; Significance: 1e-144; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 19 - 276
Target Start/End: Complemental strand, 11732223 - 11731966
Alignment:
| Q |
19 |
cttgctggccacgaaaagtgacaatgtttgtaaggaagtgagtttatctatcccggttggcatgtgagttagatccaagcaaccctcaatgttaagatgg |
118 |
Q |
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| T |
11732223 |
cttgctggccacgaaaagtgacaatgtttgtaaggaagtgagtttatctatcccggttggcatgtgagttagatccaagcaaccctcaatgttaagatgg |
11732124 |
T |
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| Q |
119 |
ctgaggcgagtcagatccttcaagtcttttggcaattccttgaggacatgacagtaggagagtttcaaggtttgcaaatggataagctttgtgatgcaac |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11732123 |
ctgaggcgagtcagatccttcaagtcttttggcaattccttgaggacatgacagtaggagagtttcaaggtttgcaaatggataagctttgtgatgcaac |
11732024 |
T |
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| Q |
219 |
taggaagcttctctatgttgttgtgggatagatctagaaacctcaagtatttcatctc |
276 |
Q |
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| T |
11732023 |
taggaagcttctctatgttgttgtgggatagatctagaaacctcaagtatttcatctc |
11731966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 19 - 272
Target Start/End: Complemental strand, 11860578 - 11860325
Alignment:
| Q |
19 |
cttgctggccacgaaaagtgacaatgtttgtaaggaagtgagtttatctatcccggttggcatgtgagttagatccaagcaaccctcaatgttaagatgg |
118 |
Q |
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||||||||| |||||||||||||||||||| || ||||| || |||| |||||| ||||||| ||||||||||||||||| ||||| | || |||||| |
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| T |
11860578 |
cttgctggctacgaaaagtgacaatgtttgcaaagaagtaagcttatttatcccacttggcatttgagttagatccaagcatccctctaagtcaagatga |
11860479 |
T |
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| Q |
119 |
ctgaggcgagtcagatccttcaagtcttttggcaattccttgaggacatgacagtaggagagtttcaaggtttgcaaatggataagctttgtgatgcaac |
218 |
Q |
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| T |
11860478 |
ttgaggcaactcaaatcgtccatgtcttttggcaattccttgaggacatgacattgagacagtttcaatgtttgcaagtggataagatttgttatgcaac |
11860379 |
T |
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| Q |
219 |
taggaagcttctctatgttgttgtgggatagatctagaaacctcaagtatttca |
272 |
Q |
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|||||||||||||||||||||| ||||| ||||||||| |||||||||| |||| |
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| T |
11860378 |
taggaagcttctctatgttgttatgggaaagatctagatacctcaagtacttca |
11860325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 19 - 272
Target Start/End: Original strand, 11901979 - 11902232
Alignment:
| Q |
19 |
cttgctggccacgaaaagtgacaatgtttgtaaggaagtgagtttatctatcccggttggcatgtgagttagatccaagcaaccctcaatgttaagatgg |
118 |
Q |
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|||||||||||| || ||||||||||||||||| |||||||| |||| ||| || ||||||||||||||||||||| ||| |||||||||| ||||||| |
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| T |
11901979 |
cttgctggccacaaagagtgacaatgtttgtaaagaagtgagcttatttataccacttggcatgtgagttagatccaggcatccctcaatgtcaagatgg |
11902078 |
T |
|
| Q |
119 |
ctgaggcgagtcagatccttcaagtcttttggcaattccttgaggacatgacagtaggagagtttcaaggtttgcaaatggataagctttgtgatgcaac |
218 |
Q |
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| T |
11902079 |
ttgaggcaactcaggccatccaagtcttttggcaattccttgaggatgtgacattgtgataatttcaatgtttgcaagtggataagcttagtgatggaac |
11902178 |
T |
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| Q |
219 |
taggaagcttctctatgttgttgtgggatagatctagaaacctcaagtatttca |
272 |
Q |
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|||| ||||| ||||||||||| || || ||||||||| |||||||||| |||| |
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| T |
11902179 |
taggtagcttttctatgttgttatgagaaagatctagatacctcaagtacttca |
11902232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 35 - 272
Target Start/End: Complemental strand, 12039327 - 12039090
Alignment:
| Q |
35 |
agtgacaatgtttgtaaggaagtgagtttatctatcccggttggcatgtgagttagatccaagcaaccctcaatgttaagatggctgaggcgagtcagat |
134 |
Q |
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||||||||||||||||| |||||||| |||| |||||| ||||||| ||||||||||||||||| ||||| | || ||||||| |||||| | ||| || |
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| T |
12039327 |
agtgacaatgtttgtaaagaagtgagcttatttatcccacttggcatttgagttagatccaagcatccctctaagtcaagatggttgaggcaactcaaat |
12039228 |
T |
|
| Q |
135 |
ccttcaagtcttttggcaattccttgaggacatgacagtaggagagtttcaaggtttgcaaatggataagctttgtgatgcaactaggaagcttctctat |
234 |
Q |
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| | || ||||||||||||||||||||| | |||||| | || |||||||| |||||||| |||||||| |||||||||||||||||||||||||||| |
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| T |
12039227 |
catccatgtcttttggcaattccttgagaaaatgacattgagaaagtttcaacgtttgcaagtggataagagttgtgatgcaactaggaagcttctctat |
12039128 |
T |
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| Q |
235 |
gttgttgtgggatagatctagaaacctcaagtatttca |
272 |
Q |
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|||||| || || ||||||||| |||||||||| |||| |
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| T |
12039127 |
gttgttatgagaaagatctagatacctcaagtacttca |
12039090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 19 - 272
Target Start/End: Complemental strand, 11828443 - 11828190
Alignment:
| Q |
19 |
cttgctggccacgaaaagtgacaatgtttgtaaggaagtgagtttatctatcccggttggcatgtgagttagatccaagcaaccctcaatgttaagatgg |
118 |
Q |
| |
|
||||||||| |||||||||||||||||||| || |||||||| ||| ||| || ||||||| ||||||||||||||||| || || | || ||||||| |
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| T |
11828443 |
cttgctggctacgaaaagtgacaatgtttgcaaagaagtgagcttacttattccacttggcatttgagttagatccaagcatccatctaagtcaagatgg |
11828344 |
T |
|
| Q |
119 |
ctgaggcgagtcagatccttcaagtcttttggcaattccttgaggacatgacagtaggagagtttcaaggtttgcaaatggataagctttgtgatgcaac |
218 |
Q |
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| |||| | ||| ||| | || ||||||||||||||| |||||||||||||| || |||||||| |||||||| |||||||| ||||| ||||||| |
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| T |
11828343 |
ttaaggcaactcaaatcatccatgtcttttggcaattctttgaggacatgacatcgagacagtttcaacgtttgcaagtggataagatttgttatgcaac |
11828244 |
T |
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| Q |
219 |
taggaagcttctctatgttgttgtgggatagatctagaaacctcaagtatttca |
272 |
Q |
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||||||||||||| |||||||| || || ||||||||| |||||||||| |||| |
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| T |
11828243 |
taggaagcttctccatgttgttatgtgaaagatctagatacctcaagtacttca |
11828190 |
T |
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