View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11557_low_13 (Length: 280)
Name: NF11557_low_13
Description: NF11557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11557_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 10 - 263
Target Start/End: Complemental strand, 33500102 - 33499848
Alignment:
| Q |
10 |
agatgaactcaagtttgacttgtgaaatgtttattctgtattattttt-atttccctccataaatctgctgaaatgaatttgatgtactttacacagtgt |
108 |
Q |
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| T |
33500102 |
agatgaactcaagtttgacttgtgaaatgtttattctgtattattttttatttccctccataaatctgccgaaatgaatttgatgtactttacacagtgt |
33500003 |
T |
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| Q |
109 |
aaatcatggtagcttagtttgtcaatatggatttatttgtttatattcatcattcttaaaattgcagcttccctcaagtctgtgtatgtcaatactgcat |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33500002 |
aaatcatggtagcttagtttgtcaatatggatttatttgtttatattcatcattcttaaaattgcagcttccctcaagtctgtgtatgtcaatactgcat |
33499903 |
T |
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| Q |
209 |
cctatttgtatagcttcattacatacgtgctataacttgctttcttcctccttaa |
263 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
33499902 |
cctatttgtatagcttcattacatacgtgctataacttgttttcttcctccttaa |
33499848 |
T |
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