View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11557_low_15 (Length: 251)
Name: NF11557_low_15
Description: NF11557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11557_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 14 - 250
Target Start/End: Complemental strand, 43162362 - 43162127
Alignment:
| Q |
14 |
agaagtcatgaaatcactatcaagatatataattatggaagaaaaaatacaaaaaatgataatgattaatcatgttaatagtaataatg--agnnnnnnn |
111 |
Q |
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| T |
43162362 |
agaagtcatgaaatcactatcaagatatataattatggaagaaaaaatacaaaaaatgataatgattaatcatgttaatagaaataatgggagaaaaaaa |
43162263 |
T |
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| Q |
112 |
nnntgtgattttaattactgcatgttaacgttatttataaagctgccatgcagtggtcacaagctaaactataatttaagtatccttttgtattgtcctg |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43162262 |
aaatgtgattttaattactgcatgttaacgttatttataaagctgccatgcagtggtcacaagctaaactataatttaagtatccttttgtattgtcctg |
43162163 |
T |
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| Q |
212 |
ttatgtgcttattattattacttatcctacattgtcctt |
250 |
Q |
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||||||||||||| ||||||||||||||||||||||| |
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| T |
43162162 |
ttatgtgcttatt---attacttatcctacattgtcctt |
43162127 |
T |
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