View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11557_low_16 (Length: 250)
Name: NF11557_low_16
Description: NF11557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11557_low_16 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 114; Significance: 6e-58; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 16 - 250
Target Start/End: Complemental strand, 39630548 - 39630318
Alignment:
| Q |
16 |
aaaacttaatgatgagctaatggttgtggtttgacattgagtccatatagaactgataatgaaaactataacaatgatccnnnnnnnnnnnngtctgata |
115 |
Q |
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| T |
39630548 |
aaaacttgatgatgagctaatggttgtggtttgacgttgagtccatatggaactgataatgaaaacta--acaatgatcctttttgttttttgtgtgata |
39630451 |
T |
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| Q |
116 |
gcatggaactgacgtaattnnnnnnnntaaaatttcgtgcatgtattgcctttatctcatggtcttagatttcgagcctcgaacttcatnnnnnnnntaa |
215 |
Q |
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| T |
39630450 |
gcatggaactgacgtaattaaaaaaa-taaaatttcgtgcatgtattgcctttatctcatggtcttagatttcgagcctcgaacttcat-aaaaaaataa |
39630353 |
T |
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| Q |
216 |
aatttcttgtttgaatggcttttattaacatcttt |
250 |
Q |
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| T |
39630352 |
aatttcttgtttgaatggcttttattaacatcttt |
39630318 |
T |
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Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 11 - 69
Target Start/End: Original strand, 28652265 - 28652323
Alignment:
| Q |
11 |
cacagaaaacttaatgatgagctaatggttgtggtttgacattgagtccatatagaact |
69 |
Q |
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|||| ||||||| ||||| |||||||||||||||||| ||||| ||||||||| ||||| |
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| T |
28652265 |
cacaaaaaacttgatgattagctaatggttgtggtttaacatttagtccatatggaact |
28652323 |
T |
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