View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11557_low_4 (Length: 484)
Name: NF11557_low_4
Description: NF11557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11557_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 341; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 126 - 466
Target Start/End: Original strand, 15114077 - 15114417
Alignment:
| Q |
126 |
tctaccttaccttcatcctctttcaaactaccctcttttgaacttgttttccccttctcagacttatcgttcttgctatcttccttaacagtattcatca |
225 |
Q |
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| T |
15114077 |
tctaccttaccttcatcctctttcaaactaccctcttttgaacttgttttccccttctcagacttatcgttcttgctatcttccttaacagtattcatca |
15114176 |
T |
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| Q |
226 |
aatgaatatacctcctcctaaactccatcgccggattatcctcaacaagcaaacccctcttatacccatctctcaaaacaacggtatacatcctattctt |
325 |
Q |
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| T |
15114177 |
aatgaatatacctcctcctaaactccatcgccggattatcctcaacaagcaaacccctcttatacccatctctcaaaacaacggtatacatcctattctt |
15114276 |
T |
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| Q |
326 |
actcgacacataaaatatccccggatgctgcaaaatcaccctcttaaacctcgatgctaaacccaaccactcaccaatcatcaaaacattatctttctcc |
425 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15114277 |
actcgacacataaaatatccccggatgctgcaaaatcaccctcttaaacctcgatgctaaacccaaccactcaccaatcatcaaaacattatctttctcc |
15114376 |
T |
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| Q |
426 |
gtctttttactcaccaaaagattcaaaatctcatgtaaaac |
466 |
Q |
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| T |
15114377 |
gtctttttactcaccaaaagattcaaaatctcatgtaaaac |
15114417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 15113964 - 15114012
Alignment:
| Q |
13 |
catcatcatcgacggtttcactagcatcctcatcttcatcatcagaaca |
61 |
Q |
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| T |
15113964 |
catcatcatcgacggtttcactagcatcctcatcttcatcatcagaaca |
15114012 |
T |
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