View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11557_low_8 (Length: 298)
Name: NF11557_low_8
Description: NF11557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11557_low_8 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 66 - 298
Target Start/End: Original strand, 32267171 - 32267404
Alignment:
| Q |
66 |
tattctttctt-gtatttgatttcatcatacacacacaaggttttagaaaaggtttacgtccgcagttgcaatagataggtcatctaactttgttttctc |
164 |
Q |
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| T |
32267171 |
tattctttctttgtatttgatttcatcatatacacacaaggttttagaaaaggtttacgtccgcaattgcaatagataggtcatctaactttgttttctc |
32267270 |
T |
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| Q |
165 |
ccacatagtta----attaaagtttcaaaatatatatttgcatctttgatgtttatttattttttagggtttagaatttagggtttcataattacaattg |
260 |
Q |
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| T |
32267271 |
ccacatagttagttaattaaagtttcaaaatat----ttgcatctttgatgtttatttattttttagggtttagaatttagggtttcataattacaattg |
32267366 |
T |
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| Q |
261 |
cagtggtatcataattacaattgcaatcgtatcgaccc |
298 |
Q |
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| T |
32267367 |
cagtggtatcataattacaattgcaatcgtatcgaccc |
32267404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 32267081 - 32267158
Alignment:
| Q |
1 |
ttaaacatcaagggcatcatggaactaatattttttgctagacaaagaaataccctggtacgtattattctttcttgt |
78 |
Q |
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| T |
32267081 |
ttaaacatcaagggcatcatggaactaatattttttgctagacaaagaaataccctggtacctattattctttcttgt |
32267158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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