View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11557_low_9 (Length: 290)
Name: NF11557_low_9
Description: NF11557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11557_low_9 |
 | |
|
| [»] chr5 (2 HSPs) |
| |
|
| [»] scaffold0127 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 248; Significance: 1e-138; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 11 - 290
Target Start/End: Complemental strand, 26610049 - 26609770
Alignment:
| Q |
11 |
cagagatcggtaaatcagagactacaaagatgtcgtatgtagacagaacacacaaaataaacaccaataaagacacgaatgcactcaccacatatccaag |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |
|
|
| T |
26610049 |
cagagatcggtaaatcagagactacaaagatgtcgtatgtaaacagaacacacaaaataaacaccaacaaagacacgaatgcactccccacatatccaag |
26609950 |
T |
|
| Q |
111 |
acctaccttcaacacacactcgttgattatagttaattcacttatttattttctatatgaaacttgagttgttaattgtggcatgataagatgtcatgtt |
210 |
Q |
| |
|
||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26609949 |
acctaccttcaacacacactcattgattatagataattcacttatttattttctatatgaaacttgagttgttaattgtggcatgataagatgtcatgtt |
26609850 |
T |
|
| Q |
211 |
caaggtaggattaggcagccacgatgaaaacaaatctgaagacttttgtgtgctgtatagatcaatctccatcgaatcat |
290 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| ||||| |
|
|
| T |
26609849 |
caaggtaggattaggcagccacgatgaaaacaaatctgaagacttttgtgagctgtatagatccatctccatcgtatcat |
26609770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 125
Target Start/End: Original strand, 8987585 - 8987700
Alignment:
| Q |
11 |
cagagatcggtaaatcagagactacaaagatgtcgtatgtagacagaacacacaaaataaacaccaataaagacacgaa-tgcactcaccacatatccaa |
109 |
Q |
| |
|
||||||| ||||||||||||||||| ||| | ||| || | |||||| ||||||||||||||||||||||||||| | ||| || ||| | | || |
|
|
| T |
8987585 |
cagagattggtaaatcagagactacgaaggcaccatatatatgcggaacacccaaaataaacaccaataaagacacgaaatacacacagcacccacctaa |
8987684 |
T |
|
| Q |
110 |
gacctaccttcaacac |
125 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
8987685 |
gacctaccttcaacac |
8987700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0127 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0127
Description:
Target: scaffold0127; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 90
Target Start/End: Original strand, 21231 - 21301
Alignment:
| Q |
20 |
gtaaatcagagactacaaagatgtcgtatgtagacagaacacacaaaataaacaccaataaagacacgaat |
90 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||| | |||||| |||||| |||| |||||||||||||||| |
|
|
| T |
21231 |
gtaaatcagagactacaaaggtgtcgtatataggcggaacacccaaaatgaacatcaataaagacacgaat |
21301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 12 - 125
Target Start/End: Original strand, 33283620 - 33283733
Alignment:
| Q |
12 |
agagatcggtaaatcagagactacaaagatgtcgtatgtagacagaacacacaaaataaacaccaataaagacacgaatgcactcaccacatatccaaga |
111 |
Q |
| |
|
|||||||||||||||||||| || ||||| || |||| ||||| ||||| ||||||||||||| ||||| |||||||| | || ||| ||||||||| |
|
|
| T |
33283620 |
agagatcggtaaatcagagattataaagacgttgtatatagacggaacatccaaaataaacaccgataaaaacacgaatacctacatcacctatccaaga |
33283719 |
T |
|
| Q |
112 |
cctaccttcaacac |
125 |
Q |
| |
|
|||| |||||||| |
|
|
| T |
33283720 |
cctaatttcaacac |
33283733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 13 - 79
Target Start/End: Complemental strand, 21030047 - 21029981
Alignment:
| Q |
13 |
gagatcggtaaatcagagactacaaagatgtcgtatgtagacagaacacacaaaataaacaccaata |
79 |
Q |
| |
|
|||| |||||||||| ||||||||||| || ||||||||| | |||||| ||||||||||||||||| |
|
|
| T |
21030047 |
gagaccggtaaatcaaagactacaaaggtgccgtatgtaggcggaacacccaaaataaacaccaata |
21029981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 125
Target Start/End: Complemental strand, 5747022 - 5746925
Alignment:
| Q |
29 |
agactacaaagatgtcgtatgtagacagaacacacaaaataaacaccaataaagacacgaa-tgcactcaccacatatccaagacctaccttcaacac |
125 |
Q |
| |
|
||||||||||| ||||||| ||| | |||||| ||||| |||| ||||||||||||||| | ||| || ||| || | |||||||||||||||||| |
|
|
| T |
5747022 |
agactacaaaggcgtcgtatataggcggaacacctaaaatgaacatcaataaagacacgaattacacacatcacctacctaagacctaccttcaacac |
5746925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 43344519 - 43344593
Alignment:
| Q |
12 |
agagatcggtaaatcagagactacaaagatgtcgtatgtagacagaacacacaaaataaacaccaataaagacac |
86 |
Q |
| |
|
||||| ||||||| ||||||||||||| || ||||| ||| | ||| || |||||||||||||||||||||||| |
|
|
| T |
43344519 |
agagaccggtaaaccagagactacaaatgtgccgtatataggcggaaaactcaaaataaacaccaataaagacac |
43344593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University