View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11558_high_1 (Length: 659)

Name: NF11558_high_1
Description: NF11558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11558_high_1
NF11558_high_1
[»] chr8 (6 HSPs)
chr8 (428-655)||(31387146-31387373)
chr8 (454-646)||(24924196-24924386)
chr8 (301-360)||(31387026-31387085)
chr8 (166-228)||(31386891-31386953)
chr8 (454-492)||(24924404-24924442)
chr8 (168-200)||(1086584-1086616)
[»] chr3 (7 HSPs)
chr3 (455-655)||(13822596-13822796)
chr3 (453-646)||(4264770-4264962)
chr3 (164-227)||(4264440-4264503)
chr3 (172-227)||(13823009-13823064)
chr3 (474-517)||(13822777-13822820)
chr3 (453-495)||(4264688-4264730)
chr3 (453-517)||(4264729-4264791)
[»] chr6 (3 HSPs)
chr6 (459-644)||(22052816-22053002)
chr6 (546-655)||(22352630-22352739)
chr6 (456-493)||(22053009-22053046)
[»] chr2 (2 HSPs)
chr2 (459-644)||(44363201-44363387)
chr2 (456-493)||(44363394-44363431)
[»] scaffold0008 (1 HSPs)
scaffold0008 (453-646)||(86473-86665)
[»] chr7 (5 HSPs)
chr7 (453-646)||(41546347-41546539)
chr7 (168-227)||(41546039-41546098)
chr7 (453-495)||(41546265-41546307)
chr7 (453-517)||(41546306-41546368)
chr7 (178-227)||(12103200-12103249)
[»] chr4 (7 HSPs)
chr4 (453-646)||(55039645-55039837)
chr4 (453-646)||(14055774-14055965)
chr4 (166-227)||(55039335-55039396)
chr4 (167-227)||(14056244-14056304)
chr4 (453-494)||(14056006-14056047)
chr4 (453-495)||(55039563-55039605)
chr4 (453-517)||(55039604-55039666)
[»] chr1 (17 HSPs)
chr1 (453-646)||(19151515-19151707)
chr1 (453-646)||(23678571-23678763)
chr1 (458-646)||(17224471-17224658)
chr1 (453-646)||(25871988-25872179)
chr1 (18-158)||(31126382-31126521)
chr1 (539-655)||(38245374-38245480)
chr1 (166-227)||(19151991-19152052)
chr1 (167-227)||(25871695-25871755)
chr1 (168-227)||(23679050-23679109)
chr1 (168-215)||(17224158-17224205)
chr1 (453-494)||(17224425-17224466)
chr1 (458-517)||(25871952-25872009)
chr1 (453-495)||(19151747-19151789)
chr1 (453-495)||(23678803-23678845)
chr1 (453-517)||(19151686-19151748)
chr1 (453-517)||(23678742-23678804)
chr1 (93-138)||(31131127-31131172)
[»] chr5 (1 HSPs)
chr5 (176-224)||(1501218-1501266)


Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 428 - 655
Target Start/End: Original strand, 31387146 - 31387373
Alignment:
Q  428 gttcaaccttagccgcacgccgccggccgccgtctcctgctccatcttccgttcaaccctagccgcgcgccaccgtctcctgctccatctccgacgatct 527  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||    
T  31387146 gttcaaccttagccgcacgccgtcggccgccgtctcctgctccatcttccgttcaaccctagccgcgcgccgccgtctcctgctccatctccgatgatct 31387245  T
Q  528 ctttcacagtgttcctttttcaactcaggtattttcttccatattcctcttcgtcttggctgttacattttgtgatttatgtaagttcttcactgagatc 627  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31387246 ctttcacagtgttcctttttcaactcaggtattttcttccatattcctcttcgtcttggctgttacattttgtgatttatgtaagttcttcactgagatc 31387345  T
Q  628 ttgggtgatctaatgttctctgctcctc 655  Q
    ||||||||||||||||||| ||||||||    
T  31387346 ttgggtgatctaatgttctttgctcctc 31387373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 454 - 646
Target Start/End: Complemental strand, 24924386 - 24924196
Alignment:
Q  454 ccgccgtctcctgctccatcttccgttcaaccctagccgcgcgccaccgtctcctgctccatctccgacgatctctttcacagtgttcctttttcaactc 553  Q
    ||||||| ||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  24924386 ccgccgtgtcctgctccatcttccgctcaaccctagc-gcgcgccgccgtctcctgctccatctccgacgatctctttcacagtgttcctttttgaactc 24924288  T
Q  554 aggtattttcttccatattcctcttcgtcttggctgttacattttgtgatttatgtaagttcttcactgagatcttgggtgatctaatgttct 646  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||    
T  24924287 aggtattttcttccatattcctcttcctcttggctgttacattttgtga-ttatgtaaggtcttgactgagatcttgggtgatctaatgttct 24924196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 301 - 360
Target Start/End: Original strand, 31387026 - 31387085
Alignment:
Q  301 tcagccgtacctctctcactctctcatttcaattcatcgtgaaaacttctctttcaccct 360  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31387026 tcagccgtacctctctcactctctcatttcaattcatcgtgaaaacttctctttcaccct 31387085  T

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Target: chr8; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 166 - 228
Target Start/End: Original strand, 31386891 - 31386953
Alignment:
Q  166 aagagcagtgataggtgtaccaccataggtggcaacacatcttataccactcttatgtggcat 228  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  31386891 aagagcagtgataggtgtaccaccataggtggcaacacaccttataccactcttatgtggcat 31386953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 454 - 492
Target Start/End: Complemental strand, 24924442 - 24924404
Alignment:
Q  454 ccgccgtctcctgctccatcttccgttcaaccctagccg 492  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  24924442 ccgccgtctcctgctccatcttccgttgaaccctagccg 24924404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 168 - 200
Target Start/End: Complemental strand, 1086616 - 1086584
Alignment:
Q  168 gagcagtgataggtgtaccaccataggtggcaa 200  Q
    ||||||||||| |||||||||||||||||||||    
T  1086616 gagcagtgataagtgtaccaccataggtggcaa 1086584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 165; Significance: 6e-88; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 165; E-Value: 6e-88
Query Start/End: Original strand, 455 - 655
Target Start/End: Complemental strand, 13822796 - 13822596
Alignment:
Q  455 cgccgtctcctgctccatcttccgttcaaccctagccgcgcgccaccgtctcctgctccatctccgacgatctctttcacagtgttcctttttcaactca 554  Q
    ||||||||||||||||||||||| |||||||||||||||  ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13822796 cgccgtctcctgctccatcttccattcaaccctagccgctagccgccgtctcctgctccatctccgacgatctctttcacagtgttcctttttcaactca 13822697  T
Q  555 ggtattttcttccatattcctcttcgtcttggctgttacattttgtgatttatgtaagttcttcactgagatcttgggtgatctaatgttctctgctcct 654  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||||||||||| |||||||    
T  13822696 ggtattttcttccatattcctcttcctcttggctgttacattttgtgatttatgtaaggtcttgactgagatcttgggtaatctaatgttctttgctcct 13822597  T
Q  655 c 655  Q
    |    
T  13822596 c 13822596  T

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Target: chr3; HSP #2
Raw Score: 138; E-Value: 8e-72
Query Start/End: Original strand, 453 - 646
Target Start/End: Original strand, 4264770 - 4264962
Alignment:
Q  453 gccgccgtctcctgctccatcttccgttcaaccctagccgcgcgccaccgtctcctgctccatctccgacgatctctttcacagtgttcctttttcaact 552  Q
    ||||||||||||||| ||||||||| |||||||||||| ||||||| ||||| |||||||||||||||||||||| ||||||| ||||||||||||||||    
T  4264770 gccgccgtctcctgccccatcttccattcaaccctagc-gcgcgccgccgtcacctgctccatctccgacgatctgtttcacaatgttcctttttcaact 4264868  T
Q  553 caggtattttcttccatattcctcttcgtcttggctgttacattttgtgatttatgtaagttcttcactgagatcttgggtgatctaatgttct 646  Q
     |||||||||||| ||||||||||||| |||||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  4264869 aaggtattttctttcatattcctcttcctcttggctgttagattttgtgatttatgtaaggtcttgactgagatcttgggtgatctaatgttct 4264962  T

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Target: chr3; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 164 - 227
Target Start/End: Original strand, 4264440 - 4264503
Alignment:
Q  164 aaaagagcagtgataggtgtaccaccataggtggcaacacatcttataccactcttatgtggca 227  Q
    ||||||||||||||||||||||||||||||||||||  ||| |||||||||| |||||||||||    
T  4264440 aaaagagcagtgataggtgtaccaccataggtggcactacaccttataccacccttatgtggca 4264503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 172 - 227
Target Start/End: Complemental strand, 13823064 - 13823009
Alignment:
Q  172 agtgataggtgtaccaccataggtggcaacacatcttataccactcttatgtggca 227  Q
    |||||||||| |||||||||||||||||| ||| |||||||||| |||||||||||    
T  13823064 agtgataggtataccaccataggtggcaatacaccttataccacccttatgtggca 13823009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 474 - 517
Target Start/End: Complemental strand, 13822820 - 13822777
Alignment:
Q  474 ttccgttcaaccctagccgcgcgccaccgtctcctgctccatct 517  Q
    ||||||||||||||||||||||| | ||||||||||||||||||    
T  13822820 ttccgttcaaccctagccgcgcgtcgccgtctcctgctccatct 13822777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 453 - 495
Target Start/End: Original strand, 4264688 - 4264730
Alignment:
Q  453 gccgccgtctcctgctccatcttccgttcaaccctagccgcgc 495  Q
    |||||||||||||| |||||||||| |||||||||||||||||    
T  4264688 gccgccgtctcctgatccatcttccattcaaccctagccgcgc 4264730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 453 - 517
Target Start/End: Original strand, 4264729 - 4264791
Alignment:
Q  453 gccgccgtctcctgctccatcttccgttcaaccctagccgcgcgccaccgtctcctgctccatct 517  Q
    ||||||||||  ||||||||||||||||  ||||||||  |||||| ||||||||||| ||||||    
T  4264729 gccgccgtcttatgctccatcttccgttacaccctagc--cgcgccgccgtctcctgccccatct 4264791  T

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Target: chr6 (Bit Score: 159; Significance: 2e-84; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 459 - 644
Target Start/End: Complemental strand, 22053002 - 22052816
Alignment:
Q  459 gtctcctgctccatcttccgttcaaccctagc-cgcgcgccaccgtctcctgctccatctccgacgatctctttcacagtgttcctttttcaactcaggt 557  Q
    |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  22053002 gtctcctgctccatcttccgttcaaccctagcgcgcgcgccgccgtctcctgctccatctccgacgatctctttcacagtgttcctttttcaacttaggt 22052903  T
Q  558 attttcttccatattcctcttcgtcttggctgttacattttgtgatttatgtaagttcttcactgagatcttgggtgatctaatgtt 644  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||    
T  22052902 attttcttccatattcctcttcctcttggctgttacattttgtgatttatgtaaggtcttgactgagatcttgggtgatctaatgtt 22052816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 546 - 655
Target Start/End: Original strand, 22352630 - 22352739
Alignment:
Q  546 ttcaactcaggtattttcttccatattcctcttcgtcttggctgttacattttgtgatttatgtaagttcttcactgagatcttgggtgatctaatgttc 645  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  22352630 ttcaactcaggtattttcttccatattcctcttcctcttggctgttacattttgtgatttatgtaaggtcttcactgagatcttgggtgatctaatgttc 22352729  T
Q  646 tctgctcctc 655  Q
    | ||||||||    
T  22352730 tttgctcctc 22352739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 456 - 493
Target Start/End: Complemental strand, 22053046 - 22053009
Alignment:
Q  456 gccgtctcctgctccatcttccgttcaaccctagccgc 493  Q
    ||||||||||||||||||||||||||||||||||||||    
T  22053046 gccgtctcctgctccatcttccgttcaaccctagccgc 22053009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 159; Significance: 2e-84; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 459 - 644
Target Start/End: Complemental strand, 44363387 - 44363201
Alignment:
Q  459 gtctcctgctccatcttccgttcaaccctagc-cgcgcgccaccgtctcctgctccatctccgacgatctctttcacagtgttcctttttcaactcaggt 557  Q
    |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  44363387 gtctcctgctccatcttccgttcaaccctagcgcgcgcgccgccgtctcctgctccatctccgacgatctctttcacagtgttcctttttcaacttaggt 44363288  T
Q  558 attttcttccatattcctcttcgtcttggctgttacattttgtgatttatgtaagttcttcactgagatcttgggtgatctaatgtt 644  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||    
T  44363287 attttcttccatattcctcttcctcttggctgttacattttgtgatttatgtaaggtcttgactgagatcttgggtgatctaatgtt 44363201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 456 - 493
Target Start/End: Complemental strand, 44363431 - 44363394
Alignment:
Q  456 gccgtctcctgctccatcttccgttcaaccctagccgc 493  Q
    ||||||||||||||||||||||||||||||||||||||    
T  44363431 gccgtctcctgctccatcttccgttcaaccctagccgc 44363394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 154; Significance: 2e-81; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 453 - 646
Target Start/End: Original strand, 86473 - 86665
Alignment:
Q  453 gccgccgtctcctgctccatcttccgttcaaccctagccgcgcgccaccgtctcctgctccatctccgacgatctctttcacagtgttcctttttcaact 552  Q
    |||| ||||||||||| |||||||||||| ||||||||  |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  86473 gccgtcgtctcctgcttcatcttccgttcgaccctagca-cgcgccgccgtctcctgctctatctccgacgatctctttcacagtgttcctttttcaact 86571  T
Q  553 caggtattttcttccatattcctcttcgtcttggctgttacattttgtgatttatgtaagttcttcactgagatcttgggtgatctaatgttct 646  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  86572 caggtattttcttccatattcctcttcgtcttggctgttacattttgtgatttatgtaaggtcttgactgagatcttgggtgatctaatgttct 86665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 146; Significance: 1e-76; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 453 - 646
Target Start/End: Original strand, 41546347 - 41546539
Alignment:
Q  453 gccgccgtctcctgctccatcttccgttcaaccctagccgcgcgccaccgtctcctgctccatctccgacgatctctttcacagtgttcctttttcaact 552  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||    
T  41546347 gccgccgtctcctgctccatcttccattcaaccctagc-gcgcgccgccgtcacctgctccatctccgacgatctgtttcacagtgttcctttttcaact 41546445  T
Q  553 caggtattttcttccatattcctcttcgtcttggctgttacattttgtgatttatgtaagttcttcactgagatcttgggtgatctaatgttct 646  Q
     |||||||||||| ||||||||||||| |||||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  41546446 aaggtattttctttcatattcctcttcctcttggctgttagattttgtgatttatgtaaggtcttgactgagatcttgggtgatctaatgttct 41546539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 168 - 227
Target Start/End: Original strand, 41546039 - 41546098
Alignment:
Q  168 gagcagtgataggtgtaccaccataggtggcaacacatcttataccactcttatgtggca 227  Q
    ||||||||||||||||||||||||||||||||  ||| |||||||||| |||||||||||    
T  41546039 gagcagtgataggtgtaccaccataggtggcactacaccttataccacccttatgtggca 41546098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 453 - 495
Target Start/End: Original strand, 41546265 - 41546307
Alignment:
Q  453 gccgccgtctcctgctccatcttccgttcaaccctagccgcgc 495  Q
    |||||||||||||| |||||||||| |||||||||||||||||    
T  41546265 gccgccgtctcctgatccatcttccattcaaccctagccgcgc 41546307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 453 - 517
Target Start/End: Original strand, 41546306 - 41546368
Alignment:
Q  453 gccgccgtctcctgctccatcttccgttcaaccctagccgcgcgccaccgtctcctgctccatct 517  Q
    ||||||||||  ||||||||||||||||  ||||||||  |||||| ||||||||||||||||||    
T  41546306 gccgccgtcttatgctccatcttccgttacaccctagc--cgcgccgccgtctcctgctccatct 41546368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 178 - 227
Target Start/End: Original strand, 12103200 - 12103249
Alignment:
Q  178 aggtgtaccaccataggtggcaacacatcttataccactcttatgtggca 227  Q
    |||| |||||||||||||||||| ||| |||||||||| ||| |||||||    
T  12103200 aggtataccaccataggtggcaatacaccttataccacccttgtgtggca 12103249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 146; Significance: 1e-76; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 453 - 646
Target Start/End: Original strand, 55039645 - 55039837
Alignment:
Q  453 gccgccgtctcctgctccatcttccgttcaaccctagccgcgcgccaccgtctcctgctccatctccgacgatctctttcacagtgttcctttttcaact 552  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||    
T  55039645 gccgccgtctcctgctccatcttccattcaaccctagc-gcgcgccgccgtcacctgctccatctccgacgatctgtttcacagtgttcctttttcaact 55039743  T
Q  553 caggtattttcttccatattcctcttcgtcttggctgttacattttgtgatttatgtaagttcttcactgagatcttgggtgatctaatgttct 646  Q
     |||||||||||| ||||||||||||| |||||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  55039744 aaggtattttctttcatattcctcttcctcttggctgttagattttgtgatttatgtaaggtcttgactgagatcttgggtgatctaatgttct 55039837  T

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Target: chr4; HSP #2
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 453 - 646
Target Start/End: Complemental strand, 14055965 - 14055774
Alignment:
Q  453 gccgccgtctcctgctccatcttccgttcaaccctagccgcgcgccaccgtctcctgctccatctccgacgatctctttcacagtgttcctttttcaact 552  Q
    ||||||||||| || |||||||||| |||||| | ||| ||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||| |    
T  14055965 gccgccgtctcttgttccatcttccattcaacgcaagc-gcgcgccgccgtcacctgctccatctccgacgatctctttcacagtgttc-tttttcaagt 14055868  T
Q  553 caggtattttcttccatattcctcttcgtcttggctgttacattttgtgatttatgtaagttcttcactgagatcttgggtgatctaatgttct 646  Q
    |||||||||||||  |||||||||||| |||||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  14055867 caggtattttctttaatattcctcttcctcttggctgttagattttgtgatttatgtaaggtcttgactgagatcttgggtgatctaatgttct 14055774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 166 - 227
Target Start/End: Original strand, 55039335 - 55039396
Alignment:
Q  166 aagagcagtgataggtgtaccaccataggtggcaacacatcttataccactcttatgtggca 227  Q
    ||||||||||||||||||||||||||||||||||  ||| |||||||||| |||||||||||    
T  55039335 aagagcagtgataggtgtaccaccataggtggcactacaccttataccacccttatgtggca 55039396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 167 - 227
Target Start/End: Complemental strand, 14056304 - 14056244
Alignment:
Q  167 agagcagtgataggtgtaccaccataggtggcaacacatcttataccactcttatgtggca 227  Q
    |||||||||||||||||||||||||||||||||| ||| |||||||||| ||| |||||||    
T  14056304 agagcagtgataggtgtaccaccataggtggcaatacaccttataccacccttgtgtggca 14056244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 453 - 494
Target Start/End: Complemental strand, 14056047 - 14056006
Alignment:
Q  453 gccgccgtctcctgctccatcttccgttcaaccctagccgcg 494  Q
    ||||||||||||||||||||||||||| ||||||||||||||    
T  14056047 gccgccgtctcctgctccatcttccgtccaaccctagccgcg 14056006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 453 - 495
Target Start/End: Original strand, 55039563 - 55039605
Alignment:
Q  453 gccgccgtctcctgctccatcttccgttcaaccctagccgcgc 495  Q
    |||||||||||||| |||||||||| |||||||||||||||||    
T  55039563 gccgccgtctcctgatccatcttccattcaaccctagccgcgc 55039605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 453 - 517
Target Start/End: Original strand, 55039604 - 55039666
Alignment:
Q  453 gccgccgtctcctgctccatcttccgttcaaccctagccgcgcgccaccgtctcctgctccatct 517  Q
    ||||||||||  ||||||||||||| ||  ||||||||  |||||| ||||||||||||||||||    
T  55039604 gccgccgtcttatgctccatcttccattacaccctagc--cgcgccgccgtctcctgctccatct 55039666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 146; Significance: 1e-76; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 453 - 646
Target Start/End: Complemental strand, 19151707 - 19151515
Alignment:
Q  453 gccgccgtctcctgctccatcttccgttcaaccctagccgcgcgccaccgtctcctgctccatctccgacgatctctttcacagtgttcctttttcaact 552  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||    
T  19151707 gccgccgtctcctgctccatcttccattcaaccctagc-gcgcgccgccgtcacctgctccatctccgacgatctgtttcacagtgttcctttttcaact 19151609  T
Q  553 caggtattttcttccatattcctcttcgtcttggctgttacattttgtgatttatgtaagttcttcactgagatcttgggtgatctaatgttct 646  Q
     |||||||||||| ||||||||||||| |||||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  19151608 aaggtattttctttcatattcctcttcctcttggctgttagattttgtgatttatgtaaggtcttgactgagatcttgggtgatctaatgttct 19151515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 453 - 646
Target Start/End: Complemental strand, 23678763 - 23678571
Alignment:
Q  453 gccgccgtctcctgctccatcttccgttcaaccctagccgcgcgccaccgtctcctgctccatctccgacgatctctttcacagtgttcctttttcaact 552  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||    
T  23678763 gccgccgtctcctgctccatcttccattcaaccctagc-gcgcgccgccgtcacctgctccatctccgacgatctgtttcacagtgttcctttttcaact 23678665  T
Q  553 caggtattttcttccatattcctcttcgtcttggctgttacattttgtgatttatgtaagttcttcactgagatcttgggtgatctaatgttct 646  Q
     |||||||||||| ||||||||||||| |||||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  23678664 aaggtattttctttcatattcctcttcctcttggctgttagattttgtgatttatgtaaggtcttgactgagatcttgggtgatctaatgttct 23678571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 458 - 646
Target Start/End: Original strand, 17224471 - 17224658
Alignment:
Q  458 cgtctcctgctccatcttccgttcaaccctagccgcgcgccaccgtctcctgctccatctccgacgatctctttcacagtgttcctttttcaactcaggt 557  Q
    ||||| |||||||||||||| |||||||||||| | ||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  17224471 cgtcttctgctccatcttccattcaaccctagc-gagcgccgccgtcacctgctccatctccgacgatctcttttacagtgttcctttttcaactcaggt 17224569  T
Q  558 attttcttccatattcctcttcgtcttggctgttacattttgtgatttatgtaagttcttcactgagatcttgggtgatctaatgttct 646  Q
    |||||||| ||||||||||||| |||||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  17224570 attttctttcatattcctcttcctcttggctgttagattttgtgatttatgtaaggtcttgactgagatcttgggtgatctaatgttct 17224658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 453 - 646
Target Start/End: Original strand, 25871988 - 25872179
Alignment:
Q  453 gccgccgtctcctgctccatcttccgttcaaccctagccgcgcgccaccgtctcctgctccatctccgacgatctctttcacagtgttcctttttcaact 552  Q
    ||||||||||||||||| ||||||| |||||||||||| ||||||| ||||| ||||||||||||||||| ||||||||||||||||||||| |||||||    
T  25871988 gccgccgtctcctgctcaatcttccattcaaccctagc-gcgcgccgccgtcacctgctccatctccgacaatctctttcacagtgttccttcttcaact 25872086  T
Q  553 caggtattttcttccatattcctcttcgtcttggctgttacattttgtgatttatgtaagttcttcactgagatcttgggtgatctaatgttct 646  Q
    ||| ||||||||| ||||||||||||| |||||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  25872087 cag-tattttctttcatattcctcttcctcttggctgttagattttgtgatttatgtaaggtcttgactgagatcttgggtgatctaatgttct 25872179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 18 - 158
Target Start/End: Complemental strand, 31126521 - 31126382
Alignment:
Q  18 gtttttggggattttgataattttgttttggctatgaataagaacgaaatgagagttacagagtaataaagtaagaaagaaaccaatgtttcgagttcca 117  Q
    |||||||||||| |||||| |||||||||||||| |||||||||||| | |||||||||||||   ||||||||||||||||||||| ||||||||||||    
T  31126521 gtttttggggatattgatagttttgttttggctaagaataagaacgacacgagagttacagag---taaagtaagaaagaaaccaatatttcgagttcca 31126425  T
Q  118 ttttgtacgtaagata--tttcactttggttgctatcacattg 158  Q
    ||| ||||||||||||  ||| |||| |||||||||| |||||    
T  31126424 tttggtacgtaagatatttttgacttgggttgctatcgcattg 31126382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 539 - 655
Target Start/End: Complemental strand, 38245480 - 38245374
Alignment:
Q  539 ttcctttttcaactcaggtattttcttccatattcctcttcgtcttggctgttacattttgtgatttatgtaagttcttcactgagatcttgggtgatct 638  Q
    ||||||||||||||||||||||||||||||||||||      |||||| ||||||||||||||||||||||||| ||||||||    | |||| ||||||    
T  38245480 ttcctttttcaactcaggtattttcttccatattcc------tcttggttgttacattttgtgatttatgtaaggtcttcact----ttttggatgatct 38245391  T
Q  639 aatgttctctgctcctc 655  Q
    |||||||| || |||||    
T  38245390 aatgttctttgttcctc 38245374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 166 - 227
Target Start/End: Complemental strand, 19152052 - 19151991
Alignment:
Q  166 aagagcagtgataggtgtaccaccataggtggcaacacatcttataccactcttatgtggca 227  Q
    ||||||||||||||||||||||||||||||||||  ||| |||||||||| |||||||||||    
T  19152052 aagagcagtgataggtgtaccaccataggtggcactacaccttataccacccttatgtggca 19151991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 167 - 227
Target Start/End: Original strand, 25871695 - 25871755
Alignment:
Q  167 agagcagtgataggtgtaccaccataggtggcaacacatcttataccactcttatgtggca 227  Q
    |||||||||||||||||||||||||||||||||| ||| |||||||||| ||| |||||||    
T  25871695 agagcagtgataggtgtaccaccataggtggcaatacaccttataccacccttttgtggca 25871755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 168 - 227
Target Start/End: Complemental strand, 23679109 - 23679050
Alignment:
Q  168 gagcagtgataggtgtaccaccataggtggcaacacatcttataccactcttatgtggca 227  Q
    ||||||||||||||||||||||||||||||||  ||| |||||||||| |||||||||||    
T  23679109 gagcagtgataggtgtaccaccataggtggcactacaccttataccacccttatgtggca 23679050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 168 - 215
Target Start/End: Original strand, 17224158 - 17224205
Alignment:
Q  168 gagcagtgataggtgtaccaccataggtggcaacacatcttataccac 215  Q
    ||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  17224158 gagcagtgataggtgtaccaccataggtggcaatacaccttataccac 17224205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 453 - 494
Target Start/End: Original strand, 17224425 - 17224466
Alignment:
Q  453 gccgccgtctcctgctccatcttccgttcaaccctagccgcg 494  Q
    |||||||||||| |||||||||||||||||||||||||||||    
T  17224425 gccgccgtctcccgctccatcttccgttcaaccctagccgcg 17224466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 458 - 517
Target Start/End: Original strand, 25871952 - 25872009
Alignment:
Q  458 cgtctcctgctccatcttccgttcaaccctagccgcgcgccaccgtctcctgctccatct 517  Q
    |||||||||||||||||||||||||||||||||  | |||| ||||||||||||| ||||    
T  25871952 cgtctcctgctccatcttccgttcaaccctagc--ctcgccgccgtctcctgctcaatct 25872009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 453 - 495
Target Start/End: Complemental strand, 19151789 - 19151747
Alignment:
Q  453 gccgccgtctcctgctccatcttccgttcaaccctagccgcgc 495  Q
    |||||||||||||| |||||||||| |||||||||||||||||    
T  19151789 gccgccgtctcctgatccatcttccattcaaccctagccgcgc 19151747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 453 - 495
Target Start/End: Complemental strand, 23678845 - 23678803
Alignment:
Q  453 gccgccgtctcctgctccatcttccgttcaaccctagccgcgc 495  Q
    |||||||||||||| |||||||||| |||||||||||||||||    
T  23678845 gccgccgtctcctgatccatcttccattcaaccctagccgcgc 23678803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 453 - 517
Target Start/End: Complemental strand, 19151748 - 19151686
Alignment:
Q  453 gccgccgtctcctgctccatcttccgttcaaccctagccgcgcgccaccgtctcctgctccatct 517  Q
    ||||||||||  ||||||||||||||||  |||||||||  ||||| ||||||||||||||||||    
T  19151748 gccgccgtcttatgctccatcttccgttacaccctagcc--gcgccgccgtctcctgctccatct 19151686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 453 - 517
Target Start/End: Complemental strand, 23678804 - 23678742
Alignment:
Q  453 gccgccgtctcctgctccatcttccgttcaaccctagccgcgcgccaccgtctcctgctccatct 517  Q
    ||||||||||  ||||||||||||||||  |||||||||  ||||| ||||||||||||||||||    
T  23678804 gccgccgtcttatgctccatcttccgttacaccctagcc--gcgccgccgtctcctgctccatct 23678742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 138
Target Start/End: Complemental strand, 31131172 - 31131127
Alignment:
Q  93 aaagaaaccaatgtttcgagttccattttgtacgtaagatatttca 138  Q
    |||||||||||||||||| ||||||||| |||||||||||| ||||    
T  31131172 aaagaaaccaatgtttcgggttccatttggtacgtaagatacttca 31131127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 176 - 224
Target Start/End: Complemental strand, 1501266 - 1501218
Alignment:
Q  176 ataggtgtaccaccataggtggcaacacatcttataccactcttatgtg 224  Q
    |||||| |||||||||||||||||| ||| ||| |||||| ||||||||    
T  1501266 ataggtataccaccataggtggcaatacaccttctaccacccttatgtg 1501218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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