View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11558_high_11 (Length: 455)
Name: NF11558_high_11
Description: NF11558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11558_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 183; Significance: 8e-99; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 9 - 267
Target Start/End: Complemental strand, 35766350 - 35766092
Alignment:
| Q |
9 |
agcataggccagtgacaacatggaagaaaaacgcgacgtgactctaattatcgataattctctccttgtgaagaagtcctttgccgatcttggaatcata |
108 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || |
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| T |
35766350 |
agcagaggccagtgacaacatggaagaaaaacgcgacgtgactctaattatcgataattctctcctagtgaagaagtcctttgccgatcttggaatcgta |
35766251 |
T |
|
| Q |
109 |
cctactggatggggggatgaagaagaaaaagaacaagtaacaaagcctcctgagccaaattatgcttctcatggatgggaattgaaccaacttgaaaata |
208 |
Q |
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||||||||||||||||| ||||| |||||||| | |||| ||| ||| |||| ||||||||||||||||| ||||||||||||||||||| ||||||| |
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| T |
35766250 |
cctactggatggggggacgaagaggaaaaagatgaggtaagaaaaccttctgaaccaaattatgcttctcaaggatgggaattgaaccaacatgaaaatg |
35766151 |
T |
|
| Q |
209 |
atgaaacgaactcctgggaacggtattgggcttctgttggtgaacgtgcaaaagaatat |
267 |
Q |
| |
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||||||| |||||||||||||| |||||||||||||||| | ||||||||||||||||| |
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| T |
35766150 |
atgaaacaaactcctgggaacgttattgggcttctgttgataaacgtgcaaaagaatat |
35766092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 268 - 439
Target Start/End: Complemental strand, 35766055 - 35765890
Alignment:
| Q |
268 |
attcagagggagcactatggtagcaacttgcataacatagtgtatcaaggaagaaatggtcggaatgggaattggggaacatgggatggttacaacagaa |
367 |
Q |
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||||||||||||| || |||| ||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||||||| || ||||||| |
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| T |
35766055 |
attcagagggagcgctttggtggcaacttgcataacaa---gtatcaaggaagaaatggtgggagtgggaattggggaacatgggatggatataacagaa |
35765959 |
T |
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| Q |
368 |
ggagagaaaacaacatgccatggtctaagaaccctggatatcatcatggcactaatgagtatcacatgaata |
439 |
Q |
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|||||| |||||||| |||||||||||||||||||||||||||||||||||| ||| ||||| ||||||| |
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| T |
35765958 |
ggagag---acaacatgtcatggtctaagaaccctggatatcatcatggcactagtgactatcagatgaata |
35765890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 268 - 439
Target Start/End: Complemental strand, 35755429 - 35755258
Alignment:
| Q |
268 |
attcagagggagcactatggtagcaacttgcataacatagtgt-atcaaggaagaaatggtcggaatgggaattggggaacatgggatggttacaacaga |
366 |
Q |
| |
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||||||||||||||||||||| | |||||||||||| ||| | ||||||||||||||| ||| |||||||||||||||||||||||| || | |||| |
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| T |
35755429 |
attcagagggagcactatggtggtgacttgcataaca-agtaccaacaaggaagaaatggtgggagtgggaattggggaacatgggatggatatagcaga |
35755331 |
T |
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| Q |
367 |
aggagagaaaacaacatgccatggtctaagaaccctggatatcatcatggcactaatgagtatcacatgaata |
439 |
Q |
| |
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|||||||||||||||||| |||||||||||| ||||| | ||||| |||||| |||||||||||| ||||||| |
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| T |
35755330 |
aggagagaaaacaacatgtcatggtctaagagccctgaaaatcattatggcaataatgagtatcagatgaata |
35755258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 108 - 267
Target Start/End: Complemental strand, 35760768 - 35760612
Alignment:
| Q |
108 |
acctactggatggggggatgaagaagaaaaagaacaagtaacaaagcctcctgagccaaattatgcttctcatggatgggaattgaaccaacttgaaaat |
207 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| |||||||||||| |||| || ||||||||| |||| |||||||||| |||||||| ||||||| |
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| T |
35760768 |
acctactggatggggggacgaagaagaaaaagaa---gtaacaaagccttctgaaccgaattatgctgctcagggatgggaatcgaaccaacatgaaaat |
35760672 |
T |
|
| Q |
208 |
aatgaaacgaactcctgggaacggtattgggcttctgttggtgaacgtgcaaaagaatat |
267 |
Q |
| |
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|||||||| ||||| ||||||| |||| | ||| |||||| ||||| | ||||||||||| |
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| T |
35760671 |
aatgaaacaaactcttgggaacagtatcgtgctcctgttgttgaacattcaaaagaatat |
35760612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 337 - 439
Target Start/End: Complemental strand, 35798948 - 35798846
Alignment:
| Q |
337 |
aattggggaacatgggatggttacaacagaaggagagaaaacaacatgccatggtctaagaaccctggatatcatcatggcactaatgagtatcacatga |
436 |
Q |
| |
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|||||||||||||||||||| || ||||||| || ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
35798948 |
aattggggaacatgggatggatataacagaaagaaagaaaacaacatgtcttggtctaagaaccctggatatcatcatggcactaatgagtatcagatga |
35798849 |
T |
|
| Q |
437 |
ata |
439 |
Q |
| |
|
||| |
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|
| T |
35798848 |
ata |
35798846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 268 - 413
Target Start/End: Complemental strand, 35785555 - 35785413
Alignment:
| Q |
268 |
attcagagggagcactatggtagcaacttgcataacatagtgtatcaaggaagaaatggtcggaatgggaattggggaacatgggatggttacaacagaa |
367 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||||||| | |||||||||||||||||| ||||| | ||||||| |||||||||||| || ||||||| |
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| T |
35785555 |
attcagagggagaactatggtggcaacttgcataacaaa---tatcaaggaagaaatggttggaatagtaattgggcaacatgggatgggtataacagaa |
35785459 |
T |
|
| Q |
368 |
ggagagaaaacaacatgccatggtctaagaaccctggatatcatca |
413 |
Q |
| |
|
|||||||||||| ||| | |||||| ||||||||| |||||||| |
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| T |
35785458 |
agagagaaaacaagatgtctcggtctatgaaccctggttatcatca |
35785413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 337 - 439
Target Start/End: Complemental strand, 35789320 - 35789218
Alignment:
| Q |
337 |
aattggggaacatgggatggttacaacagaaggagagaaaacaacatgccatggtctaagaaccctggatatcatcatggcactaatgagtatcacatga |
436 |
Q |
| |
|
|||||||| ||||||||||| || ||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||| |||||||||||||| |||| |
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| T |
35789320 |
aattgggggacatgggatggatataacagaaggagagaaaacaacatatcatggtctacgaaccctggatatgatcatggaactaatgagtatcagatga |
35789221 |
T |
|
| Q |
437 |
ata |
439 |
Q |
| |
|
||| |
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|
| T |
35789220 |
ata |
35789218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 115 - 229
Target Start/End: Complemental strand, 35755618 - 35755504
Alignment:
| Q |
115 |
ggatggggggatgaagaagaaaaagaacaagtaacaaagcctcctgagccaaattatgcttctcatggatgggaattgaaccaacttgaaaataatgaaa |
214 |
Q |
| |
|
||||||||||| ||||||||||||||| |||| | ||||||| ||||||||||||||||| ||| |||||||||| || |||| |||||||||||||| |
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| T |
35755618 |
ggatggggggacgaagaagaaaaagaagaagttagaaagccttctgagccaaattatgctggtcagggatgggaatcaaatcaacatgaaaataatgaaa |
35755519 |
T |
|
| Q |
215 |
cgaactcctgggaac |
229 |
Q |
| |
|
| ||||| ||||||| |
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|
| T |
35755518 |
caaactcttgggaac |
35755504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 309 - 439
Target Start/End: Complemental strand, 35760537 - 35760410
Alignment:
| Q |
309 |
gtatcaaggaagaaatggtcggaatgggaattggggaacatgggatggttacaacagaaggagagaaaacaacatgccatggtctaagaaccctggatat |
408 |
Q |
| |
|
|||||||||||||||||| || |||| ||||||||| |||||||||| || ||||||| ||||||| |||||| | |||||||| ||||| ||| || |
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| T |
35760537 |
gtatcaaggaagaaatggcgggcatggaaattggggagcatgggatggatataacagaaagagagaa---aacatgtcgtggtctaataaccccggacat |
35760441 |
T |
|
| Q |
409 |
catcatggcactaatgagtatcacatgaata |
439 |
Q |
| |
|
||||||| |||||||| ||||| ||||||| |
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|
| T |
35760440 |
tatcatggtactaatgaatatcagatgaata |
35760410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 108 - 220
Target Start/End: Complemental strand, 35799201 - 35799092
Alignment:
| Q |
108 |
acctactggatggggggatgaagaagaaaaagaacaagtaacaaagcctcctgagccaaattatgcttctcatggatgggaattgaaccaacttgaaaat |
207 |
Q |
| |
|
|||||||||||||||||| |||||||| ||| | ||||||||||| |||| |||||||||||| ||| ||||| |||| ||||||| ||||||| |
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|
| T |
35799201 |
acctactggatggggggacgaagaagac---gaaaagttaacaaagccttctgaaccaaattatgctgctctgggatgcgaatcaaaccaacatgaaaat |
35799105 |
T |
|
| Q |
208 |
aatgaaacgaact |
220 |
Q |
| |
|
|||||||| |||| |
|
|
| T |
35799104 |
aatgaaacaaact |
35799092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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