View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11558_high_29 (Length: 246)
Name: NF11558_high_29
Description: NF11558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11558_high_29 |
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Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 19 - 236
Target Start/End: Complemental strand, 8673827 - 8673610
Alignment:
| Q |
19 |
atagaaccaacttgcttttcaattttccttctcttattctaagagcataaatcctccacatcattagtgaaaccttctacataacttttgaaattattga |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8673827 |
atagaaccaacttgcttttcaattttccttctcttattctaagagcataaatcctccacatcattagtgaaaccttctacataacttttgaaattattga |
8673728 |
T |
|
| Q |
119 |
agccagttgaaaaatcggtaacttccctgtttctgagtagtgcctgcctaactaagtcaccattttgaccccaggaaacagtagggggccgttgttcgaa |
218 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
8673727 |
agccagttgaaaaatcggtaacttccctgtttctgagtagtgcctgcctaactaagtcaccattttgaccccaggaaacggtagggggccgttgttcgaa |
8673628 |
T |
|
| Q |
219 |
atcaacattcacttcatc |
236 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
8673627 |
atcaacattcacttcatc |
8673610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 19 - 236
Target Start/End: Original strand, 8674429 - 8674647
Alignment:
| Q |
19 |
atagaaccaacttgcttttcaattttccttctcttattctaagagcataaatcctccacatcattagtgaaaccttctacataacttttgaaattattga |
118 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| || |||||||||||||||||| |
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| T |
8674429 |
atagaatcaactagcttttcaattttccttctcttattctggaagcataaatcctccacattattagtgaaaccttctgcagaacttttgaaattattga |
8674528 |
T |
|
| Q |
119 |
agccagttgaaaaatcggtaacttccctgtttctgagtagtgcctgcctaactaagtcaccattttgaccccaggaaacagta----gggggccgttgtt |
214 |
Q |
| |
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|| ||||||||||| || |||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||| ||| ||| ||||||||| |
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| T |
8674529 |
agtcagttgaaaaaccgataacttccctgtttct---tggtggctgcctaactaagtcaccattttgaccccaggaaacggtatttggggagccgttgtt |
8674625 |
T |
|
| Q |
215 |
cgaaatcaacattcacttcatc |
236 |
Q |
| |
|
|||||||||||||||||||||| |
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|
| T |
8674626 |
cgaaatcaacattcacttcatc |
8674647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 19 - 236
Target Start/End: Complemental strand, 23438316 - 23438096
Alignment:
| Q |
19 |
atagaaccaacttgcttttcaattttccttctcttattctaagagcataaatcctccacatcattagtgaaaccttctacataacttttgaaattattga |
118 |
Q |
| |
|
|||||| ||||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |
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|
| T |
23438316 |
atagaatcaactagcttttcaaatttccttctcttattctgagagcataaatcctccacatcattagtgaaaccttctgcagaacttttgaaattattga |
23438217 |
T |
|
| Q |
119 |
agccagttgaaaaatcggtaacttccctgtttctgagtagtgcctgcctaactaagtcaccattttgaccccaggaaacagta---gggggccgttgttc |
215 |
Q |
| |
|
|| |||||||||| | ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |
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|
| T |
23438216 |
agtcagttgaaaaccccgtaacttccctgtttctgagtagtggctgcctaactaagtcaccattttgaccccaggaaacggtatttgggggccgttgttc |
23438117 |
T |
|
| Q |
216 |
gaaatcaacattcacttcatc |
236 |
Q |
| |
|
|||||||||| |||||||||| |
|
|
| T |
23438116 |
gaaatcaacactcacttcatc |
23438096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 19 - 236
Target Start/End: Original strand, 23439064 - 23439284
Alignment:
| Q |
19 |
atagaaccaacttgcttttcaattttccttctcttattctaagagcataaatcctccacatcattagtgaaaccttctacataacttttgaaattattga |
118 |
Q |
| |
|
|||||| ||||| |||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||| |
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|
| T |
23439064 |
atagaatcaactagcttttcaattttctttctcttattctgagagcataaatcctccacatcattagtgaaaccttctgcagaacttttgaaagtattga |
23439163 |
T |
|
| Q |
119 |
agccagttgaaaaatcggtaacttccctgtttctgagtagtgcctgcctaactaagtcaccattttgaccccaggaaacagta---gggggccgttgttc |
215 |
Q |
| |
|
|| |||||||||||| || ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| ||| |||||||||||||| |
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|
| T |
23439164 |
agtcagttgaaaaattggaaacttccctgtttctgagtagtggcttcctaactaagtcaccattttgaccccaggaaacggtatttgggggccgttgttc |
23439263 |
T |
|
| Q |
216 |
gaaatcaacattcacttcatc |
236 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
23439264 |
gaaatcaacattcacttcatc |
23439284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 92; Significance: 8e-45; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 35 - 233
Target Start/End: Complemental strand, 50508066 - 50507865
Alignment:
| Q |
35 |
tttcaattttccttctcttattctaagagcataaatcctccacatcattagtgaaaccttctacataacttttgaaattattgaagccagttgaaaaatc |
134 |
Q |
| |
|
||||||||||||||||||||| || ||||||| ||| ||||||||||||| |||||||||| | |||||||||||||||||||||||||||||||| |
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|
| T |
50508066 |
tttcaattttccttctcttatgctgagagcatgaatgttccacatcattagcgaaaccttctgcggaacttttgaaattattgaagccagttgaaaaact |
50507967 |
T |
|
| Q |
135 |
ggtaacttccctgtttctgagtagtgcctgcctaactaagtcaccattttgaccccaggaaacagta---gggggccgttgttcgaaatcaacattcact |
231 |
Q |
| |
|
||||| ||||| ||| ||||| | || |||||| |||||||| |||||||||||||||||||| ||| |||| | ||||||| |||||||||||||| |
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|
| T |
50507966 |
ggtaatttccccgttactgagcaatgactgccttactaagtcgccattttgaccccaggaaacggtatttggggcctgttgttccgaatcaacattcact |
50507867 |
T |
|
| Q |
232 |
tc |
233 |
Q |
| |
|
|| |
|
|
| T |
50507866 |
tc |
50507865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 26 - 197
Target Start/End: Original strand, 10783332 - 10783503
Alignment:
| Q |
26 |
caacttgcttttcaattttccttctcttattctaagagcataaatcctccacatcattagtgaaaccttctacataacttttgaaattattgaagccagt |
125 |
Q |
| |
|
||||| ||||||||| |||||||||||||| | |||||| ||| |||| |||||||||||||||||||| || ||||||||||||||||| ||| |
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|
| T |
10783332 |
caactagcttttcaagtttccttctcttatgttgggagcatgaatgctccgcatcattagtgaaaccttctgtggaatttttgaaattattgaagttagt |
10783431 |
T |
|
| Q |
126 |
tgaaaaatcggtaacttccctgtttctgagtagtgcctgcctaactaagtcaccattttgaccccaggaaac |
197 |
Q |
| |
|
||||||| |||||||| || ||| ||||| |||| | |||| |||||||| |||||||||||||||||||| |
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|
| T |
10783432 |
tgaaaaactggtaactttcccgttactgagcagtgtcggccttactaagtcgccattttgaccccaggaaac |
10783503 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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