View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11558_high_8 (Length: 480)
Name: NF11558_high_8
Description: NF11558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11558_high_8 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 10 - 480
Target Start/End: Original strand, 40924143 - 40924632
Alignment:
| Q |
10 |
atgaagatagaaatggatgaaaacaagtgaagcataaaacacaaacgcctgtgaatgaagtgaatctagtatggaaaatgagaattggtatcatactttg |
109 |
Q |
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| T |
40924143 |
atgaagatagaaatggatgaaaacaagtgaagcataaaacacaaacgccagtgaatgaagcgaatctagtatggaaaatgagaattggtatcatactttg |
40924242 |
T |
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| Q |
110 |
taatcttcatctaagaaactaacaaatccttcacagttgttgtaggttacgttgaccaatgggcaatgacgatggcagagctgaggggccattgagaatg |
209 |
Q |
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| T |
40924243 |
tgatcttcatctaagaaactaacaaatccttcacagttgttgtaggttacgttgac-------caatgaccatggcagagctgaggggccattgagaatg |
40924335 |
T |
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| Q |
210 |
ttcaaggctgaatgaaaaagagttagaagaagattgtcccatatagtatcgatgtatc------------cttgttaactaacaccgagcatgctaatat |
297 |
Q |
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| T |
40924336 |
ttcaaggctgaatgaaaaagagttagaagaagattgtcccatatagtatcgatgtatccctcaaatattacttgttaactaacaccgagcatgctaatat |
40924435 |
T |
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| Q |
298 |
aaatttttgtcaatcaactcaaaatctaacatagatcc--------------gcagtgtttaaaaaccggttaataacaatgattaaactaaatactaag |
383 |
Q |
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| T |
40924436 |
aaatttttgtcaatcaactcaaaatctaacatagatccgcagtcacatatttgcagtgtttaagaaccagttaataacaatggttaaactaaatactaag |
40924535 |
T |
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| Q |
384 |
taattatcagaacttcaacaaaattaacagaaatattaactgaagtgtcctatatgaagatgataattcttgaaacaacaaggtagaattgcaaacc |
480 |
Q |
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| T |
40924536 |
taattatcagaacttcaacaaaattaacagaaatattaactgaagtgtcctatatgaagatgataattcttgaaacaacaaggtagaattgcaaacc |
40924632 |
T |
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Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 393 - 429
Target Start/End: Original strand, 34990691 - 34990727
Alignment:
| Q |
393 |
gaacttcaacaaaattaacagaaatattaactgaagt |
429 |
Q |
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| T |
34990691 |
gaacttcaacaaaattaacagaaatattaactgaagt |
34990727 |
T |
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