View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11558_low_10 (Length: 473)
Name: NF11558_low_10
Description: NF11558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11558_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 23 - 463
Target Start/End: Original strand, 22362627 - 22363067
Alignment:
| Q |
23 |
attctctctatcattgctcttgattcctataagtgataattaataataatacacaatttagatccacttgatatattgtaatattgctgcattaggcaat |
122 |
Q |
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|||||||||||| ||| |||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |
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| T |
22362627 |
attctctctatctttgttcttgattcctataagtggtaattaacaataatacacaatttagacccacttgatatattgtaatattgctacattaggcaat |
22362726 |
T |
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| Q |
123 |
agcttacattaaatgcagtttcaagaattgtcggtccgaatccagcgagcacagattgttgattatctcctccaccaatatagaaaggctacataaaatt |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22362727 |
agcttacattaaatgcagtttcaagaattgtcggtccgaatccagcaagcacagattgttgattatctcctccaccaatatagaaaggctacataaaatt |
22362826 |
T |
|
| Q |
223 |
gaagaatgttagaaaaacatggtaacaagttaacataaagtggataatatgtaagtgaaacatgtgaaattatagatgcatatatgtacctgaaaagtat |
322 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
22362827 |
gaagaatgttagaaaaacatggtaacaagataacataaagtggataatatgtgagtgaaacatgtgaaattatagaagcatatatgtacctgaaaagtat |
22362926 |
T |
|
| Q |
323 |
cacctaaacttgtagaggggtcaaaactgcatatgacatgaagtctctgaccttcacctatattcactaaataaaatacagtacctgctggaattacata |
422 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22362927 |
cacctaaacttgtagaggggtcaaaactgcatatgacatgaagtctctgaccttcacctatattcactaaataaaatacagtacctgctggaattacata |
22363026 |
T |
|
| Q |
423 |
caaatcccccgtctttattctcctttcctctagttcatctc |
463 |
Q |
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||||||||| ||||||||||||||||||||||||||||||| |
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| T |
22363027 |
caaatcccctgtctttattctcctttcctctagttcatctc |
22363067 |
T |
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