View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11558_low_12 (Length: 451)
Name: NF11558_low_12
Description: NF11558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11558_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 290; Significance: 1e-162; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 1 - 327
Target Start/End: Original strand, 6965857 - 6966183
Alignment:
| Q |
1 |
gttttggaggtcgcttggatatcgatactaactatggcatccgtaaagctttccttccacgggtataatatggttgatcatctcgcgattcttttatatt |
100 |
Q |
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| T |
6965857 |
gttttggaggtcgcttggatatcgatactaactatggcatccgtaaagctttccttccacgggtataatatggttgatcatctcacgattcttttatatt |
6965956 |
T |
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| Q |
101 |
gcagagagttatagttaaatgcggctgatacaaactcaatcgcatgaaccttattcannnnnnngtatcttaataactagtactgatcattttcttgttg |
200 |
Q |
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| T |
6965957 |
gcagagagttatagttaaatgcggctgatacaaactcaattgcatgaaccttattcatttgtttgtattttaataactagtactgatcattttcttgttg |
6966056 |
T |
|
| Q |
201 |
attttaatcatggaattagggaaagaggaaatatactccgctacgacaaccaactgctcagcaagttctgattgacaaaatatctgcaggtcctataact |
300 |
Q |
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| T |
6966057 |
attttaatcatggaattagggaaagaggaaatatactccgctacgccaaccaactgctcagcaagttctgattgacaaaatatctgcaggtcctataact |
6966156 |
T |
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| Q |
301 |
ctgattgcaattggaactcatacaaat |
327 |
Q |
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| T |
6966157 |
ctgattgcaattggaactcatacaaat |
6966183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 170 - 438
Target Start/End: Original strand, 6955854 - 6956122
Alignment:
| Q |
170 |
ttaataactagtactgatcattttcttgttgattttaatcatggaattagggaaagaggaaatatactccgctacgacaaccaactgctcagcaagttct |
269 |
Q |
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| T |
6955854 |
ttaataactagtactaaacattttcttgctgattttaatcatggaattagggaaaaaggaaatatactccgctacgacaaccaactactcagcaagttct |
6955953 |
T |
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| Q |
270 |
gattgacaaaatatctgcaggtcctataactctgattgcaattggaactcatacaaatttagccattttccttatgaataatccacacctaaagaaaaat |
369 |
Q |
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| T |
6955954 |
gattgacaaaatatctgcaggtcctataactctgattgtgactggcgcgcatacaaatttagccattttccttatgaataatccacacctaaagaaaaat |
6956053 |
T |
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| Q |
370 |
gtggaacatgtttacgtcatgggtggtggtataaggtcaaaaacttgttgcaccaaaaatgcttcatct |
438 |
Q |
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| T |
6956054 |
gtggaacatgtttacatcatgggtggtgttataaggtcaaaaacttgttgcaccaaaaatgcttcatct |
6956122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 6955515 - 6955651
Alignment:
| Q |
1 |
gttttggaggtcgcttggatatcgatactaactatggcatccgtaaagctttccttccacgggtataatatggttgatcatctcgcgattcttttatatt |
100 |
Q |
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||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||||||||||| || | ||| ||||| || || || |
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| T |
6955515 |
gttttggaggtcgcttggatatcgacactaaccttggcatccgtaaagctttccttccacaggtataatatggttggtcgtttcgtgattc-ttcatttt |
6955613 |
T |
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| Q |
101 |
gcagagagttatagttaaatgcggctgatacaaactca |
138 |
Q |
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| T |
6955614 |
gaagagagttgaagttaaatgtgactaatacaaactca |
6955651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 64; Significance: 8e-28; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 218 - 409
Target Start/End: Complemental strand, 49116125 - 49115934
Alignment:
| Q |
218 |
agggaaagaggaaatatactccgctacgacaaccaactgctcagcaagttctgattgacaaaatatctgcaggtcctataactctgattgcaattggaac |
317 |
Q |
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||||||| ||||||||||| || ||| |||||||||||||| ||||| ||||||| ||| | ||||||||||| | |||| || || || ||| | |
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| T |
49116125 |
agggaaaaaggaaatatacaccactagagcaaccaactgctcaacaagtgttgattgaaaaagtgtctgcaggtcccacaactttgtttatgatgggagc |
49116026 |
T |
|
| Q |
318 |
tcatacaaatttagccattttccttatgaataatccacacctaaagaaaaatgtggaacatgtttacgtcatgggtggtggtataaggtcaa |
409 |
Q |
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| T |
49116025 |
tcatacaaatgttgcaattttcctaatgaataatccacaccttaagaaaaatgtggaacatatttatataatgggtggaggtgtaaggtcaa |
49115934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 207 - 409
Target Start/End: Complemental strand, 49103838 - 49103636
Alignment:
| Q |
207 |
atcatggaattagggaaagaggaaatatactccgctacgacaaccaactgctcagcaagttctgattgacaaaatatctgcaggtcctataactctgatt |
306 |
Q |
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||||||| || ||||||| ||||||||||| || ||| |||||||||||||| ||||| ||||||| ||| | ||||||||||| | |||| || || |
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| T |
49103838 |
atcatggcatcagggaaaaaggaaatatacaccactagagcaaccaactgctcaacaagtgttgattgaaaaagtgtctgcaggtcccacaactttgttt |
49103739 |
T |
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| Q |
307 |
gcaattggaactcatacaaatttagccattttccttatgaataatccacacctaaagaaaaatgtggaacatgtttacgtcatgggtggtggtataaggt |
406 |
Q |
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|| ||| ||||||||||| | || |||||||| ||||||||||||||||| |||||||||||||||||| |||| | |||||||| ||| |||| | |
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| T |
49103738 |
atgatgggagctcatacaaatgttgcaattttcctaatgaataatccacaccttaagaaaaatgtggaacatatttatataatgggtggaggtgtaagat |
49103639 |
T |
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| Q |
407 |
caa |
409 |
Q |
| |
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||| |
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| T |
49103638 |
caa |
49103636 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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