View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11558_low_13 (Length: 441)
Name: NF11558_low_13
Description: NF11558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11558_low_13 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 388; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 1 - 425
Target Start/End: Original strand, 38567264 - 38567688
Alignment:
| Q |
1 |
aacattttgtaagccgccgcctgacctgccgcaaaagcactcaaaccagatgatgcctggccaagagacctnnnnnnntacatatccatatgaagaaaca |
100 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
38567264 |
aacattttgtaagccgccgcccgacctgccgcaaaagcactcaaaccagatgatgcctggccaagagacctaaaaaaatacatatccatatgaagaaacg |
38567363 |
T |
|
| Q |
101 |
agaattaatgtaattaaggaactttcaaattgacttagcatgggggtgcataaaaatgaaggtaccacttacatggaagcagttaacacgaccataatca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38567364 |
agaattaatgtaattaaggaactttcaaattgacttagcatggaggtgcataaaaatgaaggtaccacttacatggaagcagttaacacgaccataatca |
38567463 |
T |
|
| Q |
201 |
cattaatcactgtgcctccattatatcctttttccatgaccatctttgcaccaaaccatacagccaaagcataacctaggaacataagaaacataaatgt |
300 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38567464 |
cattaatcaccgtgcctccattatatcctttttccatgaccatctttgcaccaaaccatacagccaaagcataacctaggaacataagaaacataaatgt |
38567563 |
T |
|
| Q |
301 |
gcctacacctactccagatataaaaccttcaaaaactcctgatttgtaaccatctacaagatgtttgctgtaattagctactgcttgcttttcaccagta |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38567564 |
gcctacacctactccagatataaaaccttcaaaaactcctgatttgtaaccatctacaagatgtttgctgtaattagctactgcttgcttttcaccagta |
38567663 |
T |
|
| Q |
401 |
aaggaagcaacctgaaaatacacac |
425 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
38567664 |
aaggaagcaacctgaaaatacacac |
38567688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 1 - 425
Target Start/End: Original strand, 38526139 - 38526560
Alignment:
| Q |
1 |
aacattttgtaagccgccgcctgacctgccgcaaaagcactcaaaccagatgatgcctggccaagagacctnnnnnnntacatatccatatgaagaaaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||| || | ||||||||||||||||||||| ||||||||||| || | | | |
|
|
| T |
38526139 |
aacattttgtaagccgccgcctgacccgccgcaaaagcactcatacttggtgatgcctggccaagagacctaaaaatacacatatccataagat-atata |
38526237 |
T |
|
| Q |
101 |
agaattaatgtaattaaggaactttcaaattgacttagcatgggggtgcataaaaatgaaggtaccacttacatggaagcagttaacacgaccataatca |
200 |
Q |
| |
|
||||| ||| ||||||||||||||| | || ||| || | ||||||||||| ||| |||||||||||||| ||||||||| | ||||||| |
|
|
| T |
38526238 |
ttttttaatctaaataaggaactttcaaactttattggcaaggatattcataaaaatgatggtt--acttacatggaagctgttaacacggcgataatca |
38526335 |
T |
|
| Q |
201 |
cattaatcactgtgcctccattatatcctttttccatgaccatctttgcaccaaaccatacagccaaagcataacctaggaacataagaaacataaatgt |
300 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||| |||| ||||||||||||||||||||| |||||||||||||| ||| |||| |||||||| ||| |
|
|
| T |
38526336 |
cattaatcacggtgccaccattatatcctttttcaatgatcatctttgcaccaaaccatactgccaaagcataaccacagaaaataacaaacataactgt |
38526435 |
T |
|
| Q |
301 |
gcctacacctactccagatataaaaccttcaaaaactcctgatttgtaaccatctacaagatgtttgctgtaattagctactgcttgcttttcaccagta |
400 |
Q |
| |
|
||||| ||| |||||| |||| ||||||||||||||||||||||||| ||||||||||| |||||| ||| ||| ||||||||||||||| |||||| |
|
|
| T |
38526436 |
gcctagtcctgctccagctatagtaccttcaaaaactcctgatttgtaagcatctacaagaaatttgctataactagatactgcttgcttttccccagta |
38526535 |
T |
|
| Q |
401 |
aaggaagcaacctgaaaatacacac |
425 |
Q |
| |
|
||||| |||||||||||||| |||| |
|
|
| T |
38526536 |
aaggatgcaacctgaaaatatacac |
38526560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University