View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11558_low_14 (Length: 434)
Name: NF11558_low_14
Description: NF11558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11558_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 183; Significance: 8e-99; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 188 - 423
Target Start/End: Original strand, 29458268 - 29458517
Alignment:
| Q |
188 |
ctgcagaaaattcaagttggtgactggtgagcgatatattcaatctttgttgttgtttatcccaacaaaatcagctaaaattgttttctagagattggtt |
287 |
Q |
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| T |
29458268 |
ctgcagaaaattcaagttggtgaccgttgagcgatatattcaatctttgttgttgtttatcccaacaaaattagctaaaattgttttctagagaatggtt |
29458367 |
T |
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| Q |
288 |
gcgaattagttactaaac--------------agtgttacgaatactactctcagggtaacactttttatcaactcacttgggatatggtctgatgatgt |
373 |
Q |
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| T |
29458368 |
gcgaattagttactaaacggtaacacttttaaagtgttacgaatactactctcagggtagcactttttatcaactcacttgggatatggtctgatgatgt |
29458467 |
T |
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| Q |
374 |
tagctttgaaccttggaatgagacctttgtatgtgctcttctcatgtctc |
423 |
Q |
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| T |
29458468 |
tagctttgaaccttggaatgagacctttgtatgtgctcttctcatgtctc |
29458517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 29458081 - 29458202
Alignment:
| Q |
1 |
ttagttaatgaagtcgtcgagttgcttaagcaatatgttttgtactttattgtgaaacaactaatcttgtatgtaaatgatgcaggtggaattctagata |
100 |
Q |
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| T |
29458081 |
ttagttaatgaagtcgtcgagttgcttaagcaatatgttttgtactttattgtgaaacaactaatcttgtatgtaaatgatgcaggcggaattctagata |
29458180 |
T |
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| Q |
101 |
tgataagaaacaatttttgtga |
122 |
Q |
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| T |
29458181 |
tgataagaaacaatttttgtga |
29458202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 223 - 304
Target Start/End: Original strand, 29422388 - 29422469
Alignment:
| Q |
223 |
atattcaatctttgttgttgtttatcccaacaaaatcagctaaaattgttttctagagattggttgcgaattagttactaaa |
304 |
Q |
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| T |
29422388 |
atattcaatttttattgctgtttatcccaatagaattaactaaaattgttttatagagattggttgtgaattagctactaaa |
29422469 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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