View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11558_low_15 (Length: 404)
Name: NF11558_low_15
Description: NF11558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11558_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 16 - 396
Target Start/End: Complemental strand, 14003181 - 14002801
Alignment:
| Q |
16 |
aaaataaaaccaaagaaattgagctttaaaccttccacaccaattgaagtagcttcttatcctcacttgcattttttcccctcatcattattttatcctt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14003181 |
aaaataaaaccaaagaaattgagctttaaaccttccacaccaattgaagtagcttcttatcctcacttgcattttttcccctcatcattattttatcctt |
14003082 |
T |
|
| Q |
116 |
ttgctttgatctaacatatgatcctttcacaggaacagggcttgaacctgcccttaaactcttctcccaatcaatcttcttaacttctttcaaacatttt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14003081 |
ttgctttgatctaacatatgatcctttcacaggaacagggcttgaacctgcccttaaactcttctcccaatcaatcttcttaacttctttcaaacatttt |
14002982 |
T |
|
| Q |
216 |
ttgggtctaaaatttggtgtaaaagcacaaccctttttatttgcttctttgttaacctccttgatttcaattttagttcctccttccattctcatcctta |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14002981 |
ttgggtctaaaatttggtgtaaaagcacaaccctttttatttgcttctttgttaacctccttgatttcaattttagttcctccttccattctcatcctta |
14002882 |
T |
|
| Q |
316 |
taatcacctcagaaagtgctctaattttattatctactttaacaaatgctgcatcttttgcatctctctcctttctctgct |
396 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14002881 |
taatcacctcagaaagtgctctaattttgttatctactttaacaaatgctgcatcttttgcatctctctcctttctctgct |
14002801 |
T |
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