View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11558_low_16 (Length: 403)
Name: NF11558_low_16
Description: NF11558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11558_low_16 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 313; Significance: 1e-176; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 19 - 403
Target Start/End: Complemental strand, 32913196 - 32912810
Alignment:
| Q |
19 |
cacacgtcaagatcggatgactataatttaagttccgtatttttagaaaaattaaatctgatttttctgaaccgtccgatcttgaccggacagccattaa |
118 |
Q |
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| T |
32913196 |
cacacgtcaagatcggatgactataatttaagttctgtatttttagaaaaattaaatctgatttttctgaaccgtccgatcttgaccggacagccattaa |
32913097 |
T |
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| Q |
119 |
cgtcgtgactatgtgaatgcatgaaaaaattatggcatggaatcgtaatttttcaactcnnnnnnnnnnnnnnnnn--taacaaagctatcaactttcat |
216 |
Q |
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| T |
32913096 |
agtcgtgactatgtgaatgcatgaaaaaattatggcatggaatcgtaatttttcaactcataaaaataaatgaaaaaataacaaagctatcaactttcgt |
32912997 |
T |
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| Q |
217 |
agcaaaaacttaccaaatccatcaacgagcaacacatactgatatataagatccatgcatacatatgaagctatatttttcttagcaagaaatggataag |
316 |
Q |
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| T |
32912996 |
agcaaaaacttaccaaatccatcaacgagcaacacatactgatatataagatccatgcatacatatgaagctatatttttcttagcaagaaatggataag |
32912897 |
T |
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| Q |
317 |
tggatttggcatcctcaaagtttaatgcacaagctttcttagcttcactcacgagatccacaggacgaattttgaaattaggtgtct |
403 |
Q |
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| T |
32912896 |
tggatttggcatcctcaaagtttaatgcacaagctttcttagcttcactcacgagatccacaggacgaattttgaaattaggtgtct |
32912810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 222 - 385
Target Start/End: Complemental strand, 32924972 - 32924809
Alignment:
| Q |
222 |
aaacttaccaaatccatcaacgagcaacacatactgatatataagatccatgcatacatatgaagctatatttttcttagcaagaaatggataagtggat |
321 |
Q |
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| T |
32924972 |
aaacttaccaaatccatcaacgagcaacacgtactgatatataagatccatgcatacatattctactatattgaaatccacaagaagtggataagttgat |
32924873 |
T |
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| Q |
322 |
ttggcatcctcaaagtttaatgcacaagctttcttagcttcactcacgagatccacaggacgaa |
385 |
Q |
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| T |
32924872 |
ttggcctcctcaagatttaatgtacaagctttcttagcttcagtctcaagatccacaggacgaa |
32924809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 220 - 363
Target Start/End: Complemental strand, 32927796 - 32927656
Alignment:
| Q |
220 |
aaaaacttaccaaatccatcaacgagcaacacatactgatatataagatccatgcatacatat-gaagctatatttttcttagcaagaaatggataagtg |
318 |
Q |
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| T |
32927796 |
aaaaacctaccaaatccacaaacgagcaacacatgctggtataagagatccatgcatacatatggacgc----ttttcctccgtaagacgtgggtaagtg |
32927701 |
T |
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| Q |
319 |
gatttggcatcctcaaagtttaatgcacaagctttcttagcttca |
363 |
Q |
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| T |
32927700 |
tatttgacatcctcaaagtttaatgtacaagctcgcttagcttca |
32927656 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 222 - 351
Target Start/End: Complemental strand, 32935973 - 32935847
Alignment:
| Q |
222 |
aaacttaccaaatccatcaacgagcaacacatactgatatataagatccatgcatacatatgaagctatatttttcttagcaagaaatggataagtggat |
321 |
Q |
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|||| |||||||||||| |||||||||||||| ||| |||| |||||||| |||||||||| | | | | |||| | ||| ||||||||||||| |
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| T |
32935973 |
aaacctaccaaatccatgaacgagcaacacatgctggtataagagatccatacatacatatgga-cgttttgcttct--gtaagtcgtggataagtggat |
32935877 |
T |
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| Q |
322 |
ttggcatcctcaaagtttaatgcacaagct |
351 |
Q |
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| T |
32935876 |
ttgacatcctcaaagtttaatgcacaagct |
32935847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 159; Significance: 1e-84; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 221 - 399
Target Start/End: Complemental strand, 11825294 - 11825116
Alignment:
| Q |
221 |
aaaacttaccaaatccatcaacgagcaacacatactgatatataagatccatgcatacatatgaagctatatttttcttagcaagaaatggataagtgga |
320 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
11825294 |
aaaacttaccaaatccatcaacgagcaacacatactgatatataagatccatgcatacatatgaagctatatttttcttagcaagaaatggataactgga |
11825195 |
T |
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| Q |
321 |
tttggcatcctcaaagtttaatgcacaagctttcttagcttcactcacgagatccacaggacgaattttgaaattaggt |
399 |
Q |
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| T |
11825194 |
tttggcatcctcaaaatttaatgcacaagctttcttagcttcactctcgaaatccacaggtcgaattttgaaattaggt |
11825116 |
T |
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