View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11558_low_17 (Length: 370)
Name: NF11558_low_17
Description: NF11558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11558_low_17 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 370
Target Start/End: Original strand, 35827605 - 35827974
Alignment:
| Q |
1 |
agaaagataatccaaatcttctattgggacgttttgaattaggaaaactccttggccatggaacctttgcaaaagtccaccttgccaagaacctcaaaac |
100 |
Q |
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| T |
35827605 |
agaaagataatccaaatcttctattgggacgttttgaattaggaaaacttcttggccatggaacctttgcaaaagtccaccttgccaagaacctcaaaac |
35827704 |
T |
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| Q |
101 |
aggtgaatccgtagctataaagatcataagcaaagataaaatccttaaaagtggtttagtttcacatatcaaacgagaaatctccattctccgccgtgtt |
200 |
Q |
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| T |
35827705 |
aggtgaatccgtagctataaagatcataagtaaagataaaatccttaaaagtggtttagtttcacatatcaaacgagaaatctccattctgcgccgtgtt |
35827804 |
T |
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| Q |
201 |
cgtcacccgaacattgttcaactctttgaagtcatggctacaaagacaaagatttactttgtgatggaatatgtacgaggtggtgagcttttcaacaagg |
300 |
Q |
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| T |
35827805 |
cgtcaccccaacattgttcaactctttgaagtcatggctacaaagacaaagatttactttgtgatggaatatgtacgaggtggtgagcttttcaacaagg |
35827904 |
T |
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| Q |
301 |
atgctaaaggtaggttgaaagaagaagttgcaaggaaatattttcagcagttaatatgggctgatggatt |
370 |
Q |
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| T |
35827905 |
ttgctaaaggtaggttgaaagaagaagttgcaaggaaatattttcagcagttaatatgtgctgttggatt |
35827974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 22 - 346
Target Start/End: Complemental strand, 4957278 - 4956953
Alignment:
| Q |
22 |
tattgggacgttttgaattaggaaaactccttggccatggaacctttgcaaaagtccaccttgccaagaacctcaaaacaggtgaatccgtagctataaa |
121 |
Q |
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| T |
4957278 |
tattgggtcgtttcgaagttggaaaacttcttggccatggaacatttgcaaaggtttactatgcaaaaaacatcaaaaccgatgaaggtgttgcaatcaa |
4957179 |
T |
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| Q |
122 |
gatcataagcaaagataaaatccttaaaagtggtttagtttcacatatcaaacgagaaatctccattctccgccgtgttcgtcacccgaacattgttcaa |
221 |
Q |
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| T |
4957178 |
agtgatagacaaagagaagattcttaagggtggtttggttgctcatatcaaacgtgagatctcaattcttcgccgtgttcgacacccgaatattgttcaa |
4957079 |
T |
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| Q |
222 |
ctctttgaagtcatggcta-caaagacaaagatttactttgtgatggaatatgtacgaggtggtgagcttttcaacaaggatgctaaaggtaggttgaaa |
320 |
Q |
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| T |
4957078 |
ttgtttgaggtaatggctaacaaaaacaaagatctattttgttatggaatatgttcgtgggggtgagctttttaacaaggttgctaagggtaggttgaaa |
4956979 |
T |
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| Q |
321 |
gaagaagttgcaaggaaatattttca |
346 |
Q |
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| T |
4956978 |
gaagaggttgctagaaagtattttca |
4956953 |
T |
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