View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11558_low_18 (Length: 361)

Name: NF11558_low_18
Description: NF11558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11558_low_18
NF11558_low_18
[»] chr2 (2 HSPs)
chr2 (1-349)||(2388510-2388858)
chr2 (305-349)||(35514112-35514155)
[»] chr4 (6 HSPs)
chr4 (288-349)||(56191456-56191517)
chr4 (301-349)||(23458712-23458760)
chr4 (301-349)||(42636395-42636443)
chr4 (301-349)||(56435059-56435107)
chr4 (305-349)||(20916820-20916863)
chr4 (305-349)||(31032755-31032798)
[»] chr8 (7 HSPs)
chr8 (293-347)||(13011054-13011108)
chr8 (293-347)||(13135568-13135622)
chr8 (301-349)||(26442032-26442080)
chr8 (301-347)||(9577690-9577736)
chr8 (301-347)||(13117840-13117886)
chr8 (301-347)||(18669006-18669052)
chr8 (294-347)||(13009814-13009867)
[»] scaffold0971 (1 HSPs)
scaffold0971 (301-349)||(1359-1407)
[»] chr7 (4 HSPs)
chr7 (301-349)||(48918578-48918626)
chr7 (301-347)||(28261779-28261825)
chr7 (301-347)||(41866287-41866333)
chr7 (305-347)||(31656853-31656895)
[»] chr6 (1 HSPs)
chr6 (301-349)||(29022865-29022913)
[»] chr5 (3 HSPs)
chr5 (301-349)||(16946325-16946373)
chr5 (301-347)||(15369478-15369524)
chr5 (305-349)||(19732091-19732135)
[»] chr1 (1 HSPs)
chr1 (301-349)||(45765018-45765066)
[»] scaffold0899 (1 HSPs)
scaffold0899 (305-349)||(2459-2503)
[»] chr3 (2 HSPs)
chr3 (305-349)||(26379293-26379336)
chr3 (305-349)||(29383688-29383731)


Alignment Details
Target: chr2 (Bit Score: 280; Significance: 1e-157; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 349
Target Start/End: Original strand, 2388510 - 2388858
Alignment:
Q  1 caaaatgcaggaaaatagcttgtattctatccgtatacactgcaatttggaacctgctattactttaaatagctcatgttgaaaagaaagatccaaagac 100  Q
    ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||    
T  2388510 caaaatgcaggaaaataacttgtattctatccgtatacaccgcaatttggaacctgctattattttaaatagctcatgttgaaaagaaagaaccaaagac 2388609  T
Q  101 tagcttattagttattacaaattattttctggtttgatagcattgctactagaacnnnnnnntatttggttgtaggagattttgtgagaaaacaatcttc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||    
T  2388610 tagcttattagttattacaaattattttctggtttgatagcattgctactagaacaaaaacatatttggttgtaggagattttgtgagaaaacaatcttc 2388709  T
Q  201 aaatcatgcactacactttgtttttataattgtttcatttctttacccgttcaatcattatatctacaatattttactttccaacattaacaacaaatgt 300  Q
    ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| || | | ||||||||||||| ||||||||||||||     
T  2388710 aaatcatgcactacactttgtttttataattatttcatttctttacacgttcaatcattatatataaattgttttactttccaaaattaacaacaaatgg 2388809  T
Q  301 tttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtctc 349  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  2388810 tttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtctc 2388858  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 349
Target Start/End: Original strand, 35514112 - 35514155
Alignment:
Q  305 gtggtgtagttggttatcacgtcagtctaacacactgaaggtctc 349  Q
    |||||||||| ||||||||||||||||| ||||||||||||||||    
T  35514112 gtggtgtagt-ggttatcacgtcagtcttacacactgaaggtctc 35514155  T

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Target: chr4 (Bit Score: 54; Significance: 6e-22; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 288 - 349
Target Start/End: Complemental strand, 56191517 - 56191456
Alignment:
Q  288 taacaacaaatgttttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtctc 349  Q
    ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  56191517 taacatcaaatggtttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtctc 56191456  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 301 - 349
Target Start/End: Complemental strand, 23458760 - 23458712
Alignment:
Q  301 tttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtctc 349  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  23458760 tttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtctc 23458712  T

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Target: chr4; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 301 - 349
Target Start/End: Original strand, 42636395 - 42636443
Alignment:
Q  301 tttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtctc 349  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  42636395 tttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtctc 42636443  T

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Target: chr4; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 301 - 349
Target Start/End: Original strand, 56435059 - 56435107
Alignment:
Q  301 tttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtctc 349  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  56435059 tttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtctc 56435107  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 349
Target Start/End: Complemental strand, 20916863 - 20916820
Alignment:
Q  305 gtggtgtagttggttatcacgtcagtctaacacactgaaggtctc 349  Q
    |||||||||| ||||||||||||||||| ||||||||||||||||    
T  20916863 gtggtgtagt-ggttatcacgtcagtcttacacactgaaggtctc 20916820  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 349
Target Start/End: Original strand, 31032755 - 31032798
Alignment:
Q  305 gtggtgtagttggttatcacgtcagtctaacacactgaaggtctc 349  Q
    |||||||||| ||||||||||||||||| ||||||||||||||||    
T  31032755 gtggtgtagt-ggttatcacgtcagtcttacacactgaaggtctc 31032798  T

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Target: chr8 (Bit Score: 51; Significance: 4e-20; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 293 - 347
Target Start/End: Complemental strand, 13011108 - 13011054
Alignment:
Q  293 acaaatgttttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtc 347  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  13011108 acaaatggtttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtc 13011054  T

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Target: chr8; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 293 - 347
Target Start/End: Original strand, 13135568 - 13135622
Alignment:
Q  293 acaaatgttttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtc 347  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  13135568 acaaatggtttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtc 13135622  T

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Target: chr8; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 301 - 349
Target Start/End: Complemental strand, 26442080 - 26442032
Alignment:
Q  301 tttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtctc 349  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  26442080 tttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtctc 26442032  T

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Target: chr8; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 301 - 347
Target Start/End: Original strand, 9577690 - 9577736
Alignment:
Q  301 tttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtc 347  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  9577690 tttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtc 9577736  T

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Target: chr8; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 301 - 347
Target Start/End: Original strand, 13117840 - 13117886
Alignment:
Q  301 tttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtc 347  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  13117840 tttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtc 13117886  T

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Target: chr8; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 301 - 347
Target Start/End: Complemental strand, 18669052 - 18669006
Alignment:
Q  301 tttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtc 347  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  18669052 tttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtc 18669006  T

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Target: chr8; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 294 - 347
Target Start/End: Complemental strand, 13009867 - 13009814
Alignment:
Q  294 caaatgttttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtc 347  Q
    |||||| ||||||||||||||||||||| |||||||||||||||||||||||||    
T  13009867 caaatggtttcgtggtgtagttggttattacgtcagtctaacacactgaaggtc 13009814  T

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Target: scaffold0971 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: scaffold0971
Description:

Target: scaffold0971; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 301 - 349
Target Start/End: Complemental strand, 1407 - 1359
Alignment:
Q  301 tttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtctc 349  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  1407 tttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtctc 1359  T

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Target: chr7 (Bit Score: 49; Significance: 6e-19; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 301 - 349
Target Start/End: Complemental strand, 48918626 - 48918578
Alignment:
Q  301 tttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtctc 349  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  48918626 tttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtctc 48918578  T

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Target: chr7; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 301 - 347
Target Start/End: Complemental strand, 28261825 - 28261779
Alignment:
Q  301 tttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtc 347  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  28261825 tttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtc 28261779  T

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Target: chr7; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 301 - 347
Target Start/End: Complemental strand, 41866333 - 41866287
Alignment:
Q  301 tttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtc 347  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  41866333 tttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtc 41866287  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 347
Target Start/End: Complemental strand, 31656895 - 31656853
Alignment:
Q  305 gtggtgtagttggttatcacgtcagtctaacacactgaaggtc 347  Q
    |||||||||||||||||||||| ||||| ||||||| ||||||    
T  31656895 gtggtgtagttggttatcacgttagtctcacacactaaaggtc 31656853  T

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Target: chr6 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 301 - 349
Target Start/End: Original strand, 29022865 - 29022913
Alignment:
Q  301 tttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtctc 349  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  29022865 tttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtctc 29022913  T

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Target: chr5 (Bit Score: 49; Significance: 6e-19; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 301 - 349
Target Start/End: Complemental strand, 16946373 - 16946325
Alignment:
Q  301 tttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtctc 349  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  16946373 tttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtctc 16946325  T

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Target: chr5; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 301 - 347
Target Start/End: Original strand, 15369478 - 15369524
Alignment:
Q  301 tttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtc 347  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  15369478 tttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtc 15369524  T

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Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 305 - 349
Target Start/End: Complemental strand, 19732135 - 19732091
Alignment:
Q  305 gtggtgtagttggttatcacgtcagtctaacacactgaaggtctc 349  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  19732135 gtggtgtagttggttatcacgtcagtctaacacactgaaggtctc 19732091  T

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Target: chr1 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 301 - 349
Target Start/End: Complemental strand, 45765066 - 45765018
Alignment:
Q  301 tttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtctc 349  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  45765066 tttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtctc 45765018  T

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Target: scaffold0899 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0899
Description:

Target: scaffold0899; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 305 - 349
Target Start/End: Original strand, 2459 - 2503
Alignment:
Q  305 gtggtgtagttggttatcacgtcagtctaacacactgaaggtctc 349  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  2459 gtggtgtagttggttatcacgtcagtctaacacactgaaggtctc 2503  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 349
Target Start/End: Complemental strand, 26379336 - 26379293
Alignment:
Q  305 gtggtgtagttggttatcacgtcagtctaacacactgaaggtctc 349  Q
    |||||||||| ||||||||||||||||| ||||||||||||||||    
T  26379336 gtggtgtagt-ggttatcacgtcagtcttacacactgaaggtctc 26379293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 349
Target Start/End: Original strand, 29383688 - 29383731
Alignment:
Q  305 gtggtgtagttggttatcacgtcagtctaacacactgaaggtctc 349  Q
    |||||||||| ||||||||||||||||| ||||||||||||||||    
T  29383688 gtggtgtagt-ggttatcacgtcagtcttacacactgaaggtctc 29383731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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