View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11558_low_19 (Length: 347)
Name: NF11558_low_19
Description: NF11558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11558_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 342
Target Start/End: Complemental strand, 27701207 - 27700860
Alignment:
| Q |
1 |
gatgatgattccattgttgaaactgatttgcctggatataatctatagattgcccttttattattaaataattgattcaattcttaaattttatgcatgt |
100 |
Q |
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| T |
27701207 |
gatgatgattccattgttgaaactgatttgcctggatataatctatggattgcccttttattattaaataattgattcaattcttaaattttatgcatgt |
27701108 |
T |
|
| Q |
101 |
ttgtagtcaatagt--aatttttaa----taacatgttctaaaccatttcataatttgtatgattgaaactaatgcatctgttttataggctggactgta |
194 |
Q |
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||||||||||| | |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27701107 |
ttgtagtcaattcttaaattcttaaattttaacatgttctaaaccatttcataatttgtatgattgaaactaatgcatctgttttataggctggactgta |
27701008 |
T |
|
| Q |
195 |
ctttggttttggacctctctgtatttatctagctatacgctacatggatcgcttcctttctgtagttgacatgctggtaagtcaattgatgaagtgaaga |
294 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27701007 |
ctttggttttggacctctctgtatttatctagctatacgctacatggatcgcttcctttctgtagttgacatgctggtaagtcaattgatgaagtgaaga |
27700908 |
T |
|
| Q |
295 |
agatgatgttttttattgttgttttcattatattgtttggcacaggtt |
342 |
Q |
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||||| |||||||| |||||||||||||||| ||||||||||| |||| |
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| T |
27700907 |
agatggtgttttttgttgttgttttcattatgttgtttggcactggtt |
27700860 |
T |
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