View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11558_low_2 (Length: 622)
Name: NF11558_low_2
Description: NF11558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11558_low_2 |
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| [»] scaffold0300 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 308; Significance: 1e-173; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 56 - 551
Target Start/End: Original strand, 24678642 - 24679149
Alignment:
| Q |
56 |
atagcggacaatttcttcatatgtattggaattagaggaaagattgggagaaaatgcatggtaact------------tcaaaagttggtgggtggctat |
143 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||||||||||||| |
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| T |
24678642 |
atagcggacaatttcttcatatgtattggaattagaggaaatgttgggagaaaatgcatggtaactgcctgtattaattcaagagttggtgggtggctat |
24678741 |
T |
|
| Q |
144 |
attaattgtataagacagtaaggtaaaaaagacaagttattcaagtgactttagtattgagtttgtataagatagtaagggaaaaatagttttttattnn |
243 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24678742 |
attaattgtataagacggtaaggtaaaaaagacaagttattcaagtgactttagtattgagtttgtataagatagtaagggaaaaatagttttttattaa |
24678841 |
T |
|
| Q |
244 |
nnnnnnnnnnnnncaaatataaccgttcggttctttaataaatggttcggtttgnnnnnnnttgtcttctaatggtttggtatggttcagaatcccgaac |
343 |
Q |
| |
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||||||||| || ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||||| |
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| T |
24678842 |
aaaaaatcaaaaacaaatataaaggtccggttctttaataaatggttcggtttgaaaaaaattgtcttctaatggtttcgtatggttcggaatcccgaac |
24678941 |
T |
|
| Q |
344 |
cgttatatcaaaccaaaacttttggttcagttcgattctnnnnnnnttgaaacggttcagtttggttcaaatgactttatataatggttcgatatggcat |
443 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||| ||||||||||||||||||||| || ||||| |
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| T |
24678942 |
agttatatcaaaccaaaacttttggttcagttcggttctaaaaaaattgtaacggttcagtttggttcagatgactttatataatggttcggtacggcat |
24679041 |
T |
|
| Q |
444 |
gcttgatgttaaactaatattatatgtgactatatgaatgcaggtaatggaaacaaaaggaacttctaaattgacaactatgtacgcattatggtcaaca |
543 |
Q |
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| T |
24679042 |
gcttgatgttaaattaatattatatgtgactatatgaatgcaggaaatggaaacaaaaggaacttctaaattgacaactatgtacacattatggtcaaca |
24679141 |
T |
|
| Q |
544 |
ttagatga |
551 |
Q |
| |
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|||||||| |
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| T |
24679142 |
ttagatga |
24679149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 551 - 600
Target Start/End: Original strand, 24679265 - 24679314
Alignment:
| Q |
551 |
agaatgttcatgtcattttataactctatagaaaatgtttcttattttcg |
600 |
Q |
| |
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||||||||||||| ||||||||||| |||||||||||||||||||||||| |
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| T |
24679265 |
agaatgttcatgtaattttataactatatagaaaatgtttcttattttcg |
24679314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 24689275 - 24689234
Alignment:
| Q |
1 |
atgacaacctgaggagccgagggagttttgaggagctcaaga |
42 |
Q |
| |
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| T |
24689275 |
atgacaacctgaggagccgatggagttttgaggagctcaaga |
24689234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0300 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: scaffold0300
Description:
Target: scaffold0300; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 149 - 550
Target Start/End: Complemental strand, 3369 - 2978
Alignment:
| Q |
149 |
ttgtataagacagtaaggtaaaaaagacaagttattcaagtgactttagtattgagtttgtataagatagtaagggaaaaatagttttttattnnnnnnn |
248 |
Q |
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|||||||||||| ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||||| |||||||| |
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| T |
3369 |
ttgtataagacaataaggtaaaaaagacaagttattcatgtgactttaatattgagtttgtataagatagtaaggtaaaaatagatttttatttaaaaaa |
3270 |
T |
|
| Q |
249 |
nnnnnnnncaaatataaccgttcggttctttaataaatggttcggtttgnnnnnnnttgtcttctaatggtttggtatggttcagaatcccgaaccgtta |
348 |
Q |
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|||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||||||| |||||| |||||||| |
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| T |
3269 |
atcaaaaacaaatataacggttgggttctttaataaatggttcggtttgataaaaattgtcttctaatggtttgg----------aatcccaaaccgtta |
3180 |
T |
|
| Q |
349 |
tatcaaaccaaaacttttggttcagttcgattctnnnnnnnttgaaacggttcagtttggttcaaatgactttatataatggttcgatatggcatgcttg |
448 |
Q |
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||||||||||||||||||||||| ||||| |||| |||||||| |||||||||||||| ||||||||||||||| ||||| || |||||| ||| |
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| T |
3179 |
tatcaaaccaaaacttttggttccgttcggttctacaaattttgaaacgtttcagtttggttcagatgactttatataattgttcggtacggcatgtttg |
3080 |
T |
|
| Q |
449 |
atgttaaactaatattatatgtgactatatgaatgcaggtaatggaaacaaaaggaacttctaaattgacaactatgtacgcattatggtcaacattaga |
548 |
Q |
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||| ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
3079 |
gtgtaaaattaatattatatgtgactatatgaatgcaggtaatgcaaacaaaaggaacttctaaattgacaactatgtacacattatggtcaacattaga |
2980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0300; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 549 - 607
Target Start/End: Complemental strand, 2863 - 2805
Alignment:
| Q |
549 |
tgagaatgttcatgtcattttataactctatagaaaatgtttcttattttcgggtctgt |
607 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2863 |
tgagaatgttcatgtcattttataactctatagaaaatgtttcttattttcgggtctgt |
2805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 73; Significance: 5e-33; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 439 - 551
Target Start/End: Complemental strand, 25341590 - 25341478
Alignment:
| Q |
439 |
ggcatgcttgatgttaaactaatattatatgtgactatatgaatgcaggtaatggaaacaaaaggaacttctaaattgacaactatgtacgcattatggt |
538 |
Q |
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|||||||||| ||||||| |||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||||||||||| || || ||||||||| |
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| T |
25341590 |
ggcatgcttggtgttaaattaatattatatgtgactatatgaatgcaggaaatggaagcaaaatgaacttctaaattgacaactttgaacacattatggt |
25341491 |
T |
|
| Q |
539 |
caacattagatga |
551 |
Q |
| |
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|| ||||||||| |
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| T |
25341490 |
cagaattagatga |
25341478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 439 - 551
Target Start/End: Complemental strand, 25346073 - 25345961
Alignment:
| Q |
439 |
ggcatgcttgatgttaaactaatattatatgtgactatatgaatgcaggtaatggaaacaaaaggaacttctaaattgacaactatgtacgcattatggt |
538 |
Q |
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|||||||||| ||||||| |||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||||||||||| || || ||||||||| |
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| T |
25346073 |
ggcatgcttggtgttaaattaatattatatgtgactatatgaatgcaggaaatggaagcaaaatgaacttctaaattgacaactttgaacacattatggt |
25345974 |
T |
|
| Q |
539 |
caacattagatga |
551 |
Q |
| |
|
|| ||||||||| |
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|
| T |
25345973 |
cagaattagatga |
25345961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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