View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11558_low_20 (Length: 345)

Name: NF11558_low_20
Description: NF11558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11558_low_20
NF11558_low_20
[»] chr6 (3 HSPs)
chr6 (219-340)||(9852309-9852430)
chr6 (18-136)||(9852109-9852227)
chr6 (18-67)||(29279782-29279831)
[»] chr7 (1 HSPs)
chr7 (238-340)||(40964981-40965083)
[»] chr8 (4 HSPs)
chr8 (18-128)||(30850149-30850259)
chr8 (18-124)||(27229243-27229350)
chr8 (18-63)||(14836405-14836450)
chr8 (79-128)||(26955480-26955529)
[»] chr3 (5 HSPs)
chr3 (21-128)||(45640644-45640751)
chr3 (18-84)||(4737779-4737845)
chr3 (18-128)||(51646891-51647001)
chr3 (18-126)||(32077432-32077540)
chr3 (18-63)||(5578166-5578211)
[»] chr4 (2 HSPs)
chr4 (26-128)||(52525888-52525990)
chr4 (19-128)||(47965493-47965599)
[»] chr2 (4 HSPs)
chr2 (18-84)||(24538243-24538309)
chr2 (55-127)||(26449138-26449209)
chr2 (18-77)||(28296900-28296959)
chr2 (19-77)||(22142291-22142349)
[»] chr1 (2 HSPs)
chr1 (20-108)||(20602226-20602314)
chr1 (18-77)||(29308702-29308761)
[»] scaffold0596 (1 HSPs)
scaffold0596 (18-68)||(1690-1740)


Alignment Details
Target: chr6 (Bit Score: 110; Significance: 2e-55; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 219 - 340
Target Start/End: Original strand, 9852309 - 9852430
Alignment:
Q  219 gttgcaaacgatccatgccaaaggcatgttctttgaaatccaacgttttcttgcggttctgtccattttttcagtttgaatatgtgcatgcatgtaaaaa 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  9852309 gttgcaaacgatccatgccaaaggcatgttctttgaaatccaacgttttcttgcggttctgtccattttttcagtttgaatatgtgcatgcatgtaaaga 9852408  T
Q  319 gatttaacattcctatgcttct 340  Q
    |||||||||||| |||| ||||    
T  9852409 gatttaacattcttatggttct 9852430  T

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Target: chr6; HSP #2
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 18 - 136
Target Start/End: Original strand, 9852109 - 9852227
Alignment:
Q  18 atttctaatatgaataacactgctgacaaattgtgccaaccctaatcctaatcattttggatccaaattagtctgaccgttagattaatctatgttaatc 117  Q
    |||||||||||||||||||||||| | |||||||||||||||||||||||||| |||||| ||||| |||||||||||||||||||||||||||||||||    
T  9852109 atttctaatatgaataacactgctaaaaaattgtgccaaccctaatcctaatctttttggctccaatttagtctgaccgttagattaatctatgttaatc 9852208  T
Q  118 tccacacaatcaaaaggtg 136  Q
    |||||||||||||||||||    
T  9852209 tccacacaatcaaaaggtg 9852227  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 29279782 - 29279831
Alignment:
Q  18 atttctaatatgaataacactgctgacaaattgtgccaaccctaatccta 67  Q
    |||||||||||||||| || || | |||||||||||||||||||||||||    
T  29279782 atttctaatatgaatagcattgttaacaaattgtgccaaccctaatccta 29279831  T

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Target: chr7 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 238 - 340
Target Start/End: Original strand, 40964981 - 40965083
Alignment:
Q  238 aaaggcatgttctttgaaatccaacgttttcttgcggttctgtccattttttcagtttgaatatgtgcatgcatgtaaaaagatttaacattcctatgct 337  Q
    |||||| | |||||||||||||||||||||||||||| | ||||||||||| |||||||||||||| ||||||||||| |||||||||||||| |||| |    
T  40964981 aaaggcgtattctttgaaatccaacgttttcttgcgggtttgtccatttttccagtttgaatatgtacatgcatgtaagaagatttaacattcttatggt 40965080  T
Q  338 tct 340  Q
    |||    
T  40965081 tct 40965083  T

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Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 128
Target Start/End: Complemental strand, 30850259 - 30850149
Alignment:
Q  18 atttctaatatgaataacactgctgacaaattgtgccaaccctaatcctaatcattttggatccaaattagtctgaccgttagattaatctatgttaatc 117  Q
    |||||||||||||||||||||||| | |||||||||||||||||||| |||| ||||||| |||||||   |||| ||||||||| ||| | |||| |||    
T  30850259 atttctaatatgaataacactgctaaaaaattgtgccaaccctaatcttaatgattttggctccaaatcgttctggccgttagatcaatatgtgttgatc 30850160  T
Q  118 tccacacaatc 128  Q
    | |||||||||    
T  30850159 tacacacaatc 30850149  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 124
Target Start/End: Original strand, 27229243 - 27229350
Alignment:
Q  18 atttctaatatgaataacactgctgacaaattgtgccaaccctaa-tcctaatcattttggatccaaattagtctgaccgttagattaatctatgttaat 116  Q
    |||||||||||||||| || || | | || ||| | ||||||||| || |||| ||||||| ||||||||  |||| || |||||| |||||||||| ||    
T  27229243 atttctaatatgaatagcattgttaataatttgcgtcaaccctaattcttaatgattttggctccaaattgttctggccattagatcaatctatgttgat 27229342  T
Q  117 ctccacac 124  Q
    ||||||||    
T  27229343 ctccacac 27229350  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 14836405 - 14836450
Alignment:
Q  18 atttctaatatgaataacactgctgacaaattgtgccaaccctaat 63  Q
    ||||||||||||||||||| || | |||| ||||||||||||||||    
T  14836405 atttctaatatgaataacattgttaacaatttgtgccaaccctaat 14836450  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 128
Target Start/End: Original strand, 26955480 - 26955529
Alignment:
Q  79 tccaaattagtctgaccgttagattaatctatgttaatctccacacaatc 128  Q
    ||||||| | |||||||||||||| |||||||||| ||||| ||||||||    
T  26955480 tccaaatcattctgaccgttagataaatctatgttgatctctacacaatc 26955529  T

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Target: chr3 (Bit Score: 52; Significance: 9e-21; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 21 - 128
Target Start/End: Complemental strand, 45640751 - 45640644
Alignment:
Q  21 tctaatatgaataacactgctgacaaattgtgccaaccctaatcctaatcattttggatccaaattagtctgaccgttagattaatctatgttaatctcc 120  Q
    |||||||| ||||||| || | |||||||||| ||||||||||||||||  |||||| |||||||   |||||||||||||| ||||| |||| ||||||    
T  45640751 tctaatatcaataacaatgttaacaaattgtgtcaaccctaatcctaatggttttggctccaaatagttctgaccgttagatgaatctgtgttgatctcc 45640652  T
Q  121 acacaatc 128  Q
    ||||||||    
T  45640651 acacaatc 45640644  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 4737845 - 4737779
Alignment:
Q  18 atttctaatatgaataacactgctgacaaattgtgccaaccctaatcctaatcattttggatccaaa 84  Q
    ||||||||||||||||||| |||| ||||||||||||||||||||| |||||  |||||| ||||||    
T  4737845 atttctaatatgaataacattgctaacaaattgtgccaaccctaattctaatggttttggctccaaa 4737779  T

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Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 128
Target Start/End: Original strand, 51646891 - 51647001
Alignment:
Q  18 atttctaatatgaataacactgctgacaaattgtgccaaccctaatcctaatcattttggatccaaattagtctgaccgttagattaatctatgttaatc 117  Q
    ||||||||||||||||||| || | |||| ||||| ||||||||||| | ||  |||||| |||||| || ||||||| |||||| ||||| | || |||    
T  51646891 atttctaatatgaataacattgttaacaatttgtgtcaaccctaatcttgatgtttttggctccaaactattctgacccttagatgaatctgtattgatc 51646990  T
Q  118 tccacacaatc 128  Q
    |||||||||||    
T  51646991 tccacacaatc 51647001  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 18 - 126
Target Start/End: Complemental strand, 32077540 - 32077432
Alignment:
Q  18 atttctaatatgaataacactgctgacaaattgtgccaaccctaatcctaatcattttggatccaaattagtctgaccgttagattaatctatgttaatc 117  Q
    ||||||||||||||||||| |||| |||| || |||||||||||||| | ||  |||||| |||||| |  |||| |||||||||  || | |||| |||    
T  32077540 atttctaatatgaataacattgctaacaatttatgccaaccctaatcttgatggttttggctccaaactgttctggccgttagatgcatttgtgttgatc 32077441  T
Q  118 tccacacaa 126  Q
    |||||||||    
T  32077440 tccacacaa 32077432  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 5578211 - 5578166
Alignment:
Q  18 atttctaatatgaataacactgctgacaaattgtgccaaccctaat 63  Q
    ||||||||||||||||||| || | |||| ||||||||||||||||    
T  5578211 atttctaatatgaataacattgttaacaatttgtgccaaccctaat 5578166  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 26 - 128
Target Start/End: Complemental strand, 52525990 - 52525888
Alignment:
Q  26 tatgaataacactgctgacaaattgtgccaaccctaatcctaatcattttggatccaaattagtctgaccgttagattaatctatgttaatctccacaca 125  Q
    ||||||||||| |||| |||| ||||| |||||||||| |||||  |||||| ||||||||  ||||||||||||||  |||| |||| ||| |||||||    
T  52525990 tatgaataacattgctaacaatttgtgtcaaccctaattctaatggttttggctccaaattgttctgaccgttagatgcatctgtgttgatcaccacaca 52525891  T
Q  126 atc 128  Q
    |||    
T  52525890 atc 52525888  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 128
Target Start/End: Complemental strand, 47965599 - 47965493
Alignment:
Q  19 tttctaatatgaataacactgctgacaaattgtgccaaccctaatcctaatcattttggatccaaattagtctgaccgttagattaatctatgttaatct 118  Q
    |||||||||||||||||| |||| |||| ||||||||||||||||||| ||  |||||| |||||| |  |||||   ||||||  |||| |||| ||||    
T  47965599 tttctaatatgaataacattgctaacaatttgtgccaaccctaatcctgatggttttggctccaaactgttctga---ttagatgcatctgtgttgatct 47965503  T
Q  119 ccacacaatc 128  Q
    ||||||||||    
T  47965502 ccacacaatc 47965493  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 24538243 - 24538309
Alignment:
Q  18 atttctaatatgaataacactgctgacaaattgtgccaaccctaatcctaatcattttggatccaaa 84  Q
    ||||||||||||||||||| || | |||||||||| ||||||||||||||||  |||||| ||||||    
T  24538243 atttctaatatgaataacaatgttaacaaattgtgtcaaccctaatcctaatagttttggctccaaa 24538309  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 55 - 127
Target Start/End: Original strand, 26449138 - 26449209
Alignment:
Q  55 aaccctaatcctaatcattttggatccaaattagtctgaccgttagattaatctatgttaatctccacacaat 127  Q
    ||||||||| |||||  |||||| ||||||||| |||||||||||||| |||||| ||| |||||||||||||    
T  26449138 aaccctaattctaatt-ttttggctccaaattattctgaccgttagataaatctaagttgatctccacacaat 26449209  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 28296959 - 28296900
Alignment:
Q  18 atttctaatatgaataacactgctgacaaattgtgccaaccctaatcctaatcattttgg 77  Q
    |||||||||||||||| || || | ||||||||||||||||||||||||| | |||||||    
T  28296959 atttctaatatgaatagcattgttaacaaattgtgccaaccctaatcctacttattttgg 28296900  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 22142349 - 22142291
Alignment:
Q  19 tttctaatatgaataacactgctgacaaattgtgccaaccctaatcctaatcattttgg 77  Q
    ||||||||||||||| || || | |||||||||||||||||||||| || | |||||||    
T  22142349 tttctaatatgaatagcattgttaacaaattgtgccaaccctaatcttacttattttgg 22142291  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 108
Target Start/End: Original strand, 20602226 - 20602314
Alignment:
Q  20 ttctaatatgaataacactgctgacaaattgtgccaaccctaatcctaatcattttggatccaaattagtctgaccgttagattaatct 108  Q
    ||||||||||||||||| || | |||| ||||||||||||| ||| | ||  |||||| |||||| || ||||||| |||||| |||||    
T  20602226 ttctaatatgaataacattgttaacaatttgtgccaaccctcatcttgatggttttggctccaaactattctgacccttagatgaatct 20602314  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 29308702 - 29308761
Alignment:
Q  18 atttctaatatgaataacactgctgacaaattgtgccaaccctaatcctaatcattttgg 77  Q
    ||||||||||||||||||| || | |||||||||| ||||| |||||||| | |||||||    
T  29308702 atttctaatatgaataacattgttaacaaattgtgtcaaccttaatcctacttattttgg 29308761  T

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Target: scaffold0596 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0596
Description:

Target: scaffold0596; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 1740 - 1690
Alignment:
Q  18 atttctaatatgaataacactgctgacaaattgtgccaaccctaatcctaa 68  Q
    ||||||||||||||||||| || | |||  |||||||||||||||||||||    
T  1740 atttctaatatgaataacaatgttaacattttgtgccaaccctaatcctaa 1690  T

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