View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11558_low_21 (Length: 327)
Name: NF11558_low_21
Description: NF11558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11558_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-135; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 43 - 312
Target Start/End: Original strand, 29457752 - 29458022
Alignment:
| Q |
43 |
tgtgcggaatttgcagctatcttttgttgaacttctgttgttttgtgttctttgaactattatgatgatcattatgcatctgctactagtttgaaggatc |
142 |
Q |
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| T |
29457752 |
tgtgcggaatttgcagctatcttttgttgaacttctgttgttttgtgttctttaaactattatgatgatcattatgcatctgctactagtttgaaggatc |
29457851 |
T |
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| Q |
143 |
cata-ccctgactatgttgcacaatgcttctgctaccgctatatgtatgagaatgtgtgtgttaatcatcatcaaaaaagcagattgttaaggtatttta |
241 |
Q |
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| T |
29457852 |
catatccctgagtatgttgcacaatgcttctgctaccactatatgcatgagaatgtgtgtgttaatcatcatcaaaaaagcagattgttaaggtatttta |
29457951 |
T |
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| Q |
242 |
ttttcaattacagaatgtacaagaaggtgtgtaattgaactttacaaataacattttgaggttaatttcat |
312 |
Q |
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| T |
29457952 |
ttttcaattacagaatgtacgagaaggtgtgtaattgaactttacaaataacattttgaggttaatttcat |
29458022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 85 - 141
Target Start/End: Original strand, 45747285 - 45747343
Alignment:
| Q |
85 |
ttgtgttctttgaactattatgatgatcattatgc--atctgctactagtttgaaggat |
141 |
Q |
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| T |
45747285 |
ttgtgttctttgaactattatgatgatcattatgcatatctactactagtttgaaggat |
45747343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 234 - 311
Target Start/End: Original strand, 29422053 - 29422133
Alignment:
| Q |
234 |
gtattttattttcaattacagaatgtacaagaaggtgtgtaattgaactttac---aaataacattttgaggttaatttca |
311 |
Q |
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| T |
29422053 |
gtattttattttcaattacataatgtatcagaaggtgtgcaattaagctttactgaaaataacattttgaggttaatttca |
29422133 |
T |
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