View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11558_low_23 (Length: 305)
Name: NF11558_low_23
Description: NF11558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11558_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 65 - 288
Target Start/End: Complemental strand, 46218497 - 46218274
Alignment:
| Q |
65 |
tcaaattcatccttgagtctctccatgaatttctcaatgcagctaatattctcacatgagaagatcatcaaaatagagacgtattaagattgcatcattg |
164 |
Q |
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| T |
46218497 |
tcaaattcatccttgagtctctccatgaatttctcaatgcagcaaatattctcacatgagaagatcatcaaaatagagacgtattaagattgcatcattg |
46218398 |
T |
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| Q |
165 |
atgagaattatccaccaaattccattgagcacttgacaaactcttccggctgcaaaaattgatcaatccttctattttgtttaagtccatagattgaaca |
264 |
Q |
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| T |
46218397 |
atgagaattatccaccaaattccattgagcacttgacaaactcttccggctgcaaaaattgatcaatccttctattttgtttaagtccatagattgaaca |
46218298 |
T |
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| Q |
265 |
gctcctctccatagatgcacttct |
288 |
Q |
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|||||||||||||||||||||||| |
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| T |
46218297 |
gctcctctccatagatgcacttct |
46218274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 46218538 - 46218487
Alignment:
| Q |
1 |
tcttcaatctaatgtatctaagtgtacctaaatcactaatttcaaattcatc |
52 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46218538 |
tcttcaatctaatgtatctaagtgtacctaaatcactaatttcaaattcatc |
46218487 |
T |
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