View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11558_low_24 (Length: 295)
Name: NF11558_low_24
Description: NF11558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11558_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 18 - 282
Target Start/End: Complemental strand, 14768735 - 14768470
Alignment:
| Q |
18 |
atgctattcatcagatttataatcacaatgccagtggacttagctttgaagagctttacaggttagttttttcgtgatttctattatttgatgttggttt |
117 |
Q |
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| T |
14768735 |
atgctattcatcagatttataatcacaatgctagtggacttagctttgaagagctttacaggttagttttttcgtgatttctattgtttgatgttggttt |
14768636 |
T |
|
| Q |
118 |
cttcgaaaaatttgtgtttatatgatgttaatacgttatgttgtttgattttgatgttaattctgcaattatttagcttg-nnnnnnnaagatgtataag |
216 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |
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| T |
14768635 |
cttcgaaaaatttgggtttatatgatgttaatacgttatgttgtttgattttgatgttaattctgcaattatttagcttgttttttataagatatataag |
14768536 |
T |
|
| Q |
217 |
gtttgattggatttgcgtatttgaaattgtttattggcataagttttgtgatactgttatcggtct |
282 |
Q |
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| T |
14768535 |
gtttgattggatttgcgtatttgaacttgtttattggcataagttttgtgatactattatcggtct |
14768470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 282
Target Start/End: Original strand, 17559874 - 17560139
Alignment:
| Q |
18 |
atgctattcatcagatttataatcacaatgccagtggacttagctttgaagagctttacaggttagttttttcgtgatttctattatttgatgttggttt |
117 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |
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| T |
17559874 |
atgctattcatcagatttataatcacaatgctagtggacttagctttgaagagctttacaggttagttttttcctgatttctattgtttgatgttggttt |
17559973 |
T |
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| Q |
118 |
cttcgaaaaatttgtgtttatatgatgttaatacgttatgttgtttgattttgatgttaattctgcaattatttagcttg-nnnnnnnaagatgtataag |
216 |
Q |
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| T |
17559974 |
cttcgaaaaatttgtgtttgtatgatgttaatacgttatgttgtttgattttgatgttaattctgcaattatttagcttgttttttttaagatatataag |
17560073 |
T |
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| Q |
217 |
gtttgattggatttgcgtatttgaaattgtttattggcataagttttgtgatactgttatcggtct |
282 |
Q |
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|||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
17560074 |
gtttgattggatttgcgtttttgaacttgtttattggcataagttttgtgatactgttatcggtct |
17560139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 24400610 - 24400547
Alignment:
| Q |
18 |
atgctattcatcagatttataatcacaatgccagtggacttagctttgaagagctttacaggtt |
81 |
Q |
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||||||||||| ||||||||||||| || || ||||| ||||| |||||||| ||||||||||| |
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| T |
24400610 |
atgctattcatgagatttataatcataacgctagtggtcttagttttgaagaactttacaggtt |
24400547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 86
Target Start/End: Original strand, 3449171 - 3449240
Alignment:
| Q |
17 |
catgctattcatcagatttataatcacaatgccagtggacttagctttgaagagctttacaggttagttt |
86 |
Q |
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||||| |||||| ||||||| |||| ||||| |||||||| ||||||||||||||||| ||||| |||| |
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| T |
3449171 |
catgcaattcatgagatttacaatcgtaatgctagtggactcagctttgaagagctttataggttggttt |
3449240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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