View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11558_low_3 (Length: 536)
Name: NF11558_low_3
Description: NF11558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11558_low_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 486; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 1 - 521
Target Start/End: Complemental strand, 40681963 - 40681438
Alignment:
| Q |
1 |
aattagaacttcatggagagaattaaaatgaagatgtgaggtaaaattcaaaatcaaccatgtaataatatttcaactcttggactggttcttaattaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
40681963 |
aattagaacttcatggagagaattaaaatgaagatgtgaggtaaaattcaaaatcaaccatgtaataatatttcaactcttggactggttattaattaga |
40681864 |
T |
|
| Q |
101 |
taaaatgtctcaacaaagataaactcaaaatgatacatatcaatcacattgaagtaaaaagattttgttacttgaaacatgataatccatgctcttttta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40681863 |
taaaatgtctcaacaaagataaactcaaaatgatacatatcaatcgcattgaagcaaaaacattttgttacttgaaacatgataatccatgctcttttta |
40681764 |
T |
|
| Q |
201 |
agaattctaacactgaaaaaattgtgcagagtcaggccagtgtgcacctgatttg-----cagacttcatgaaatcacgaagattatacaattatttaga |
295 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40681763 |
agaattctaacactgaaaaaattgtgcagagtcaagccagtgtgcacctgatttgatttgcagacttcatgaaatcacgaagattatacaattatttaga |
40681664 |
T |
|
| Q |
296 |
tttctttccttgttttttcttgataacttcatcagtatacattatccccttacctttgtaaacttcaggcggcttacaattgcgaacggtagctgcaaac |
395 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40681663 |
tttctttccttgttttttcttgataacttcatcagtatacattatccccttacctttgtaaacttcaggcggcttacaattgcgaacggtagctgcaaac |
40681564 |
T |
|
| Q |
396 |
tgatgaaccctttgcttgtcgattccagtacaacaaattacattgtttttgaagcagaaaacacgaacagctggaggcgcggatagttccacctcatgac |
495 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40681563 |
tgatgaaccctttgcttgtcgattccagtacaacaaattacattgtttttgaagcagaaaacacgaacagctggaggcgcggatagttccacctcatgac |
40681464 |
T |
|
| Q |
496 |
tgtaacccaatttgagatacagtaac |
521 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
40681463 |
tgtaacccaatttgagatacagtaac |
40681438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 289 - 516
Target Start/End: Complemental strand, 34706483 - 34706256
Alignment:
| Q |
289 |
atttagatttctttccttgttttttcttgataacttcatcagtatacattatccccttacctttgtaaacttcaggcggcttacaattgcgaacggtagc |
388 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
34706483 |
atttagacttctttccttgttttttcttgataacttcatctgtatacattatgcccttgcctttgtaaacttcaggtggcttacaattgcgaacagtagc |
34706384 |
T |
|
| Q |
389 |
tgcaaactgatgaaccctttgcttgtcgattccagtacaacaaattacattgtttttgaagcagaaaacacgaacagctggaggcgcggatagttccacc |
488 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||| ||||||| |
|
|
| T |
34706383 |
tgcaaactgatgcaccctttgcttgtctattccggtacaacaaattacattgtttttgaagcagaaaacacggacagcaggaggcgcagataattccacc |
34706284 |
T |
|
| Q |
489 |
tcatgactgtaacccaatttgagataca |
516 |
Q |
| |
|
|||||||| || ||||| |||||||||| |
|
|
| T |
34706283 |
tcatgactataccccaacttgagataca |
34706256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 13 - 78
Target Start/End: Complemental strand, 34706834 - 34706769
Alignment:
| Q |
13 |
atggagagaattaaaatgaagatgtgaggtaaaattcaaaatcaaccatgtaataatatttcaact |
78 |
Q |
| |
|
||||||||||| ||||| |||||| ||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
34706834 |
atggagagaatgaaaataaagatgcgaggtaaaattcaaaatgaaccatgtaataatatttcaact |
34706769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 132 - 218
Target Start/End: Complemental strand, 34706667 - 34706578
Alignment:
| Q |
132 |
gatacatatcaatcacattgaagtaaaaagattttgttacttgaaacatgataatccat---gctctttttaagaattctaacactgaaa |
218 |
Q |
| |
|
||||||||||||||| ||||||| ||||| || |||||| ||||||| |||| |||||| ||||| |||||||||| ||||||||||| |
|
|
| T |
34706667 |
gatacatatcaatcatattgaaggaaaaaaatgttgttatttgaaacttgattatccatgaggctctgtttaagaattttaacactgaaa |
34706578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 261 - 310
Target Start/End: Complemental strand, 34713077 - 34713027
Alignment:
| Q |
261 |
ttcatgaaatc-acgaagattatacaattatttagatttctttccttgttt |
310 |
Q |
| |
|
||||||||||| || |||||||||| || |||||||||||||||||||||| |
|
|
| T |
34713077 |
ttcatgaaatcgaccaagattatacgatcatttagatttctttccttgttt |
34713027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 13 - 78
Target Start/End: Original strand, 8494250 - 8494315
Alignment:
| Q |
13 |
atggagagaattaaaatgaagatgtgaggtaaaattcaaaatcaaccatgtaataatatttcaact |
78 |
Q |
| |
|
||||||||||| ||||| |||||| ||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
8494250 |
atggagagaatgaaaataaagatgcgaggtaaaattcaaaatgaaccatgtaataatatttcaact |
8494315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University