View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11558_low_31 (Length: 239)
Name: NF11558_low_31
Description: NF11558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11558_low_31 |
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Alignment Details
Target: chr5 (Bit Score: 116; Significance: 4e-59; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 98 - 221
Target Start/End: Original strand, 12812611 - 12812734
Alignment:
| Q |
98 |
catggtgattctggctatggaggcggtgaaggaggtggggctggaggaggttacgctggtgggggagagcatggcgagtctggctatggaggtggcaaag |
197 |
Q |
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| T |
12812611 |
catggtgattctggctatggaggtggtgaaggaggtggggctggaggaggttacgctggtgggggagagcatggcgagtctggctacggaggtggcaaag |
12812710 |
T |
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| Q |
198 |
gaggtggagctggaggaggctatg |
221 |
Q |
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| T |
12812711 |
gaggtggagctggaggaggctatg |
12812734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 98 - 221
Target Start/End: Original strand, 12749519 - 12749642
Alignment:
| Q |
98 |
catggtgattctggctatggaggcggtgaaggaggtggggctggaggaggttacgctggtgggggagagcatggcgagtctggctatggaggtggcaaag |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||| | | | |||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
12749519 |
catggtgattctggctatggaggcggtgaaggaggtggggaaaaaaaaaaaaaagctggtgggggagagcatggcgagtctggctacggaggtggcaaag |
12749618 |
T |
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| Q |
198 |
gaggtggagctggaggaggctatg |
221 |
Q |
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| T |
12749619 |
gaggtggagctggaggaggttatg |
12749642 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 98 - 221
Target Start/End: Original strand, 12749588 - 12749711
Alignment:
| Q |
98 |
catggtgattctggctatggaggcggtgaaggaggtggggctggaggaggttacgctggtgggggagagcatggcgagtctggctatggaggtggcaaag |
197 |
Q |
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| T |
12749588 |
catggcgagtctggctacggaggtggcaaaggaggtggagctggaggaggttatggtggtggggtagagcatggtgcttctggctacggaggtggtgaag |
12749687 |
T |
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| Q |
198 |
gaggtggagctggaggaggctatg |
221 |
Q |
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| T |
12749688 |
gaggtggagctggaggaggctatg |
12749711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 98 - 221
Target Start/End: Original strand, 12812680 - 12812803
Alignment:
| Q |
98 |
catggtgattctggctatggaggcggtgaaggaggtggggctggaggaggttacgctggtgggggagagcatggcgagtctggctatggaggtggcaaag |
197 |
Q |
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||||| || |||||||| ||||| || |||||||||| ||||||||||| || | |||||||||||||||||| | |||||||| |||||||| ||| |
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| T |
12812680 |
catggcgagtctggctacggaggtggcaaaggaggtggagctggaggaggctatggtggtgggggagagcatggtgcttctggctacggaggtggtgaag |
12812779 |
T |
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| Q |
198 |
gaggtggagctggaggaggctatg |
221 |
Q |
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| T |
12812780 |
gaggtggagctggaggaggctatg |
12812803 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 128 - 216
Target Start/End: Original strand, 12812572 - 12812660
Alignment:
| Q |
128 |
ggaggtggggctggaggaggttacgctggtgggggagagcatggcgagtctggctatggaggtggcaaaggaggtggagctggaggagg |
216 |
Q |
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|||| ||| |||||||||||||| | |||||||||||||||||| || ||||||||||||||||| |||||||||| ||||||||||| |
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| T |
12812572 |
ggagctggcgctggaggaggttatggtggtgggggagagcatggtgattctggctatggaggtggtgaaggaggtggggctggaggagg |
12812660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 98 - 171
Target Start/End: Original strand, 12749657 - 12749730
Alignment:
| Q |
98 |
catggtgattctggctatggaggcggtgaaggaggtggggctggaggaggttacgctggtgggggagagcatgg |
171 |
Q |
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| T |
12749657 |
catggtgcttctggctacggaggtggtgaaggaggtggagctggaggaggctatggtggtgggggagagcatgg |
12749730 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 98 - 171
Target Start/End: Original strand, 12812749 - 12812822
Alignment:
| Q |
98 |
catggtgattctggctatggaggcggtgaaggaggtggggctggaggaggttacgctggtgggggagagcatgg |
171 |
Q |
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| T |
12812749 |
catggtgcttctggctacggaggtggtgaaggaggtggagctggaggaggctatggtggtgggggagagcatgg |
12812822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 128 - 204
Target Start/End: Original strand, 12749480 - 12749556
Alignment:
| Q |
128 |
ggaggtggggctggaggaggttacgctggtgggggagagcatggcgagtctggctatggaggtggcaaaggaggtgg |
204 |
Q |
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| T |
12749480 |
ggagctggcgctggaggaggttatggtggtgggggagagcatggtgattctggctatggaggcggtgaaggaggtgg |
12749556 |
T |
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