View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11558_low_32 (Length: 238)
Name: NF11558_low_32
Description: NF11558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11558_low_32 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 6965874 - 6965654
Alignment:
| Q |
1 |
ccaagcgacctccaaaaccaacaggtatggcctgcctatatctgcaatctcctgatgttgtcattccctgattgaatcaaatgttatataacatatcaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6965874 |
ccaagcgacctccaaaaccaacaggtatggcctgcctatatctgcaatctcctgctgttgtcattccctgattgaatcaaatgttatataacatatcaat |
6965775 |
T |
|
| Q |
101 |
catgaacacaaacataacttattttaaacacatttttgcattctgcataatcaaaactataatacaagtcaagtttggggtatggcagattgctgagtta |
200 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6965774 |
catgaacacaaacataactt-ttttaaacacatttttgcattctgcataatcaaaactataatacaagtcaagtttggggtatggcagattgctgagtta |
6965676 |
T |
|
| Q |
201 |
actacaatactaatgcattctc |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
6965675 |
actacaatactaatgcattctc |
6965654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 6955532 - 6955414
Alignment:
| Q |
1 |
ccaagcgacctccaaaaccaacaggtatggcctgcctatatctgcaatctcctgatgttgtcattccctgattgaatcaaatgttatataacatatcaat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||||| |||||||| | || | |||||||| |
|
|
| T |
6955532 |
ccaagcgacctccaaaaccaacaggtatggcctgcctgtatctgcaatatcctgctgttgtcattccctgattcaatcaaatttcattcataatatcaat |
6955433 |
T |
|
| Q |
101 |
catgaacacaaacataact |
119 |
Q |
| |
|
| | ||||||||||||||| |
|
|
| T |
6955432 |
cttaaacacaaacataact |
6955414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University