View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11558_low_33 (Length: 238)
Name: NF11558_low_33
Description: NF11558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11558_low_33 |
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Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 2388414 - 2388192
Alignment:
| Q |
1 |
tggaaagcttacaagttattttcctgcataattttgcaggtttctttttcaggggatagttgtattagtagttatggttgttattttatcggtggttttg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2388414 |
tggaaagcttacaagttattttcctgcataattttgcaggtttctttttaagcggatagttgtattagtagttatggttgttattttatcggtggttttg |
2388315 |
T |
|
| Q |
101 |
actatatgggaaggagatgagtttacttttgatgaatttggagcgacgactgtgtttttgttttcgagtgctgatgcatttagcggttttctgtttcagt |
200 |
Q |
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|||| |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
2388314 |
actacatgggaaggagatgagtttagttttgatgaatttggagcgacaactgtgtttttgttttcgagtgctgatgcatttagc-gttttctgtttcagt |
2388216 |
T |
|
| Q |
201 |
tcagctgtacgtctccttgcattt |
224 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
2388215 |
tcagctgtacgtctccttgcattt |
2388192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 13 - 193
Target Start/End: Original strand, 24762198 - 24762390
Alignment:
| Q |
13 |
aagttattttcctgcataattttgcaggtttctttttcaggggatagttgtattagtagttatggttgttattttatcggtggt-----------tttga |
101 |
Q |
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|||||||||| ||||||||||||||||||| || ||| |||||||||||||||||||| |||||| ||||||||||||||||| ||||| |
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| T |
24762198 |
aagttatttttctgcataattttgcaggttgctctttagggggatagttgtattagtagctatggtggttattttatcggtggtcgtcggaccagtttga |
24762297 |
T |
|
| Q |
102 |
ctatatgggaaggagatgagtttacttttgatgaatttggagcgacgactgtg-tttttgttttcgagtgctgatgcatttagcggttttctg |
193 |
Q |
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| T |
24762298 |
ctatatgggaaggagatgagtttagttttgaggaatttggagcggcgactgtgttttttgttttcgagtgctgatgcatttagcgcttttctg |
24762390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 13 - 193
Target Start/End: Original strand, 52129633 - 52129825
Alignment:
| Q |
13 |
aagttattttcctgcataattttgcaggtttctttttcaggggatagttgtattagtagttatggttgttattttatcggtggt-----------tttga |
101 |
Q |
| |
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|||||||||| ||||||||||||||||||| || ||| |||||||||||||||||||| |||||| ||||||||||||||||| ||||| |
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| T |
52129633 |
aagttatttttctgcataattttgcaggttgctctttagggggatagttgtattagtagctatggtggttattttatcggtggtcgtcggaccagtttga |
52129732 |
T |
|
| Q |
102 |
ctatatgggaaggagatgagtttacttttgatgaatttggagcgacgactgtg-tttttgttttcgagtgctgatgcatttagcggttttctg |
193 |
Q |
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|||||||||||||||||||||||| |||||| |||||||||||| |||||||| ||||||||||||||||||||||||||||||| ||||||| |
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| T |
52129733 |
ctatatgggaaggagatgagtttagttttgaggaatttggagcggcgactgtgttttttgttttcgagtgctgatgcatttagcgcttttctg |
52129825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 32649972 - 32649761
Alignment:
| Q |
1 |
tggaaagcttacaagttattttcctgcataattttgcaggtttctttttcaggggatagttgtattagtagttatggttgttattttatcggtggtt--- |
97 |
Q |
| |
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|||||| ||||||||||||||||||| ||||||||||||||| || ||| | ||||||||||||||||||| ||||| ||||||||||||| ||||| |
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| T |
32649972 |
tggaaaacttacaagttattttcctggataattttgcaggttgctctttaaagggatagttgtattagtagatatggatgttattttatcgttggttgtt |
32649873 |
T |
|
| Q |
98 |
--------ttgactatatgggaaggagatgagtttacttttgatgaatttggagcgacgactgtgtttttgttttcgagtgctgatgcatttagcggttt |
189 |
Q |
| |
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|||||||||||| ||||||||||||||| |||||| |||||| ||||| ||||| ||| |||||||| ||||| |||||||||||||| ||| |
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| T |
32649872 |
ggaccagtttgactatatggaaaggagatgagtttagttttgaggaatttcgagcggcgactttgtatttgtttttgagtgttgatgcatttagcgcttt |
32649773 |
T |
|
| Q |
190 |
tctgtttcagtt |
201 |
Q |
| |
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|| ||||||||| |
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| T |
32649772 |
tccgtttcagtt |
32649761 |
T |
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