View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11558_low_36 (Length: 214)
Name: NF11558_low_36
Description: NF11558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11558_low_36 |
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Alignment Details
Target: chr1 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 39776941 - 39776748
Alignment:
| Q |
1 |
caatgtcttgcttgtctgtattacacaaacctactttcgtgtaatttaatgcaattaattttgggagccacctatgtagctcattatatttcttttgcaa |
100 |
Q |
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| T |
39776941 |
caatgtcttgcttgtctgtaatacacaaacctactttcgtgtaatttaatgcaattaattttgggagccacctatgtagctcattatattttttttacaa |
39776842 |
T |
|
| Q |
101 |
tgtgttttaggttcttggtttaattgttccagaatcaatgttgaaggtctgtgaagtattttatggtttctggtttcaatttaacaatatatgtatttat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
39776841 |
tgtgttttaggttcttggtttaattgttccagaatcaatgttgaaggtctgtgaagtattttatgg-------tttcaatttaacaatatatgtatttat |
39776749 |
T |
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