View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11558_low_5 (Length: 524)
Name: NF11558_low_5
Description: NF11558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11558_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 485; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 1 - 509
Target Start/End: Complemental strand, 28283836 - 28283328
Alignment:
| Q |
1 |
aggaattgacgtcgctatctatgcaagaattggtagactgtgacaaagcgaatggtggatgcgaaggaggtagcgtacgaaaagctttagagtatatgaa |
100 |
Q |
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| T |
28283836 |
aggaattgacgtcactatctatgcaagaattggtagactgtgacaaagcgaatggtggatgcgaaggaggtagcgtacgaaaagctttagagtatatgaa |
28283737 |
T |
|
| Q |
101 |
gaccaatggaatagcaaaagatgtggattatccttacacagaaaaagtgggtacatgccttagcaacagaaaagaccgtgctgcaaaaattgatggttat |
200 |
Q |
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| T |
28283736 |
gaccaatggaatagcaaaagatgtggattatccttacacagaaaaagtgggtacatgccttagcaacaaaaaagaccgtgctgcgaaaattgatggttat |
28283637 |
T |
|
| Q |
201 |
gtaatagtatcacccggcgaacaaaacctattagaagcagtggcagaacagccggttacagttgcaatcgcgattaacgatgacttcaagaaatatgaaa |
300 |
Q |
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| T |
28283636 |
gtaatagtatcacccggcgaacaaaacctattagaagcagtggcacaacagccggttacagttgcaatcgcgattaacgatgacttcaagaaatatgaaa |
28283537 |
T |
|
| Q |
301 |
gtggaatatttggtagcggaccatgtggaccgaaggagtcgctcaatttttctcatgctgtcaccttaattggttatggagggagccggagaaataagta |
400 |
Q |
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| T |
28283536 |
gtggaatatttggtagcggaccatgtggaccgaaggagtcgctcaatttttctcatgcagtcaccttaattggttatggagggagccgcagaaataagta |
28283437 |
T |
|
| Q |
401 |
ttggttgattaagaattcctatggtgatgactggggtgagaaaggatacatgagattaaaaaggcaaggttcttctagttctcctgtatgtggccttgcc |
500 |
Q |
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| T |
28283436 |
ttggttgattaagaattcctatggtgatgactggggtgagaaaggatacatgagattaaaaaggcaaggttcttctagttctcctgtatgtggccttgcc |
28283337 |
T |
|
| Q |
501 |
atggtattt |
509 |
Q |
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| T |
28283336 |
atggtattt |
28283328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 399 - 476
Target Start/End: Original strand, 27349531 - 27349608
Alignment:
| Q |
399 |
tattggttgattaagaattcctatggtgatgactggggtgagaaaggatacatgagattaaaaaggcaaggttcttct |
476 |
Q |
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| T |
27349531 |
tattggttgattaagaattcttatggtacaggttggggtgagaccggatacatgaaattgaaaaggcaaggttcttct |
27349608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 303 - 333
Target Start/End: Original strand, 28004703 - 28004733
Alignment:
| Q |
303 |
ggaatatttggtagcggaccatgtggaccga |
333 |
Q |
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| T |
28004703 |
ggaatatttggtagcggaccatgtggaccga |
28004733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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