View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11558_low_6 (Length: 511)

Name: NF11558_low_6
Description: NF11558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11558_low_6
NF11558_low_6
[»] chr5 (16 HSPs)
chr5 (1-212)||(4267602-4267813)
chr5 (203-496)||(4268456-4268752)
chr5 (416-492)||(13661918-13661995)
chr5 (416-492)||(34650832-34650909)
chr5 (365-483)||(10054361-10054480)
chr5 (416-493)||(11957965-11958043)
chr5 (425-494)||(35132640-35132710)
chr5 (365-402)||(6283620-6283657)
chr5 (369-402)||(8787401-8787434)
chr5 (369-402)||(12506358-12506391)
chr5 (369-402)||(20175289-20175322)
chr5 (369-402)||(21547485-21547518)
chr5 (369-402)||(34650924-34650957)
chr5 (369-402)||(35504331-35504364)
chr5 (369-402)||(40564495-40564528)
chr5 (416-495)||(8787449-8787529)
[»] chr7 (31 HSPs)
chr7 (416-493)||(30810765-30810843)
chr7 (416-492)||(42044293-42044369)
chr7 (417-493)||(12218435-12218511)
chr7 (372-493)||(34333349-34333471)
chr7 (416-483)||(4628676-4628744)
chr7 (416-483)||(24438587-24438655)
chr7 (423-494)||(38128409-38128481)
chr7 (423-493)||(19434611-19434681)
chr7 (311-349)||(4087653-4087691)
chr7 (416-461)||(525106-525151)
chr7 (312-349)||(3021922-3021959)
chr7 (369-402)||(5239347-5239380)
chr7 (369-402)||(8754676-8754709)
chr7 (369-402)||(11686415-11686448)
chr7 (369-402)||(12218527-12218560)
chr7 (369-402)||(22739885-22739918)
chr7 (416-461)||(23363198-23363243)
chr7 (369-402)||(23363258-23363291)
chr7 (369-402)||(24798494-24798527)
chr7 (369-402)||(27456204-27456237)
chr7 (369-402)||(29993578-29993611)
chr7 (369-402)||(30810717-30810750)
chr7 (369-402)||(34546405-34546438)
chr7 (416-492)||(34606371-34606448)
chr7 (365-402)||(37631633-37631670)
chr7 (369-402)||(37674195-37674228)
chr7 (365-402)||(43594127-43594164)
chr7 (365-402)||(47839550-47839587)
chr7 (278-349)||(8754703-8754775)
chr7 (416-483)||(13064884-13064952)
chr7 (416-491)||(22739934-22740010)
[»] chr6 (28 HSPs)
chr6 (416-493)||(392206-392284)
chr6 (416-483)||(3515876-3515944)
chr6 (278-349)||(32985311-32985383)
chr6 (416-491)||(35043999-35044074)
chr6 (365-493)||(4215753-4215883)
chr6 (416-493)||(32929506-32929584)
chr6 (417-493)||(26467122-26467199)
chr6 (369-402)||(27433554-27433587)
chr6 (417-493)||(27433603-27433680)
chr6 (282-349)||(1391296-1391363)
chr6 (279-349)||(2580949-2581020)
chr6 (369-399)||(961071-961101)
chr6 (424-485)||(1127934-1127996)
chr6 (372-402)||(7851250-7851280)
chr6 (311-349)||(13529485-13529523)
chr6 (416-493)||(23402248-23402326)
chr6 (423-492)||(34706838-34706908)
chr6 (369-402)||(392158-392191)
chr6 (365-402)||(1840338-1840375)
chr6 (369-402)||(3515828-3515861)
chr6 (417-485)||(11115104-11115172)
chr6 (365-402)||(11115186-11115223)
chr6 (369-402)||(12145208-12145241)
chr6 (369-402)||(13529517-13529550)
chr6 (369-402)||(26467215-26467248)
chr6 (369-402)||(34396618-34396651)
chr6 (365-401)||(9661044-9661080)
chr6 (282-349)||(12525719-12525787)
[»] chr4 (32 HSPs)
chr4 (416-493)||(4089252-4089330)
chr4 (416-492)||(16820962-16821039)
chr4 (416-461)||(41265568-41265613)
chr4 (417-493)||(18067877-18067954)
chr4 (369-402)||(18067970-18068003)
chr4 (369-402)||(53268782-53268815)
chr4 (416-495)||(7769048-7769128)
chr4 (416-495)||(43202380-43202459)
chr4 (416-483)||(50619196-50619263)
chr4 (416-493)||(16536158-16536236)
chr4 (416-493)||(29591299-29591377)
chr4 (372-402)||(43202474-43202504)
chr4 (423-461)||(54897425-54897463)
chr4 (369-402)||(789621-789654)
chr4 (369-402)||(4089204-4089237)
chr4 (369-402)||(6164155-6164188)
chr4 (416-461)||(6164203-6164248)
chr4 (369-402)||(16536110-16536143)
chr4 (369-402)||(30387225-30387258)
chr4 (365-402)||(31680554-31680591)
chr4 (369-402)||(32202571-32202604)
chr4 (369-402)||(32217107-32217140)
chr4 (369-402)||(36395161-36395194)
chr4 (369-402)||(42898837-42898870)
chr4 (369-402)||(43944569-43944602)
chr4 (424-461)||(46149057-46149094)
chr4 (369-402)||(46688296-46688329)
chr4 (369-402)||(50167651-50167684)
chr4 (365-402)||(50603285-50603322)
chr4 (416-461)||(52533816-52533861)
chr4 (365-402)||(53655969-53656006)
chr4 (423-482)||(28120058-28120118)
[»] chr3 (27 HSPs)
chr3 (369-493)||(39074481-39074606)
chr3 (416-483)||(858699-858767)
chr3 (416-495)||(52520791-52520871)
chr3 (416-493)||(4168293-4168371)
chr3 (416-493)||(43786981-43787059)
chr3 (365-402)||(6842677-6842714)
chr3 (369-402)||(10617375-10617408)
chr3 (369-402)||(53489915-53489948)
chr3 (417-479)||(2505460-2505523)
chr3 (416-494)||(40362577-40362656)
chr3 (280-349)||(4168181-4168251)
chr3 (369-399)||(40362674-40362704)
chr3 (423-461)||(49529297-49529335)
chr3 (369-402)||(272282-272315)
chr3 (369-402)||(6842605-6842638)
chr3 (365-402)||(6842637-6842674)
chr3 (423-483)||(10617292-10617353)
chr3 (369-402)||(31514853-31514886)
chr3 (416-461)||(41304113-41304158)
chr3 (369-402)||(41554031-41554064)
chr3 (369-402)||(42964340-42964373)
chr3 (369-402)||(43786933-43786966)
chr3 (365-398)||(49893389-49893422)
chr3 (369-402)||(52520743-52520776)
chr3 (83-131)||(33219004-33219052)
chr3 (416-483)||(46352744-46352812)
chr3 (416-483)||(49893441-49893509)
[»] chr8 (44 HSPs)
chr8 (365-453)||(42433583-42433671)
chr8 (365-402)||(9278270-9278307)
chr8 (369-402)||(9537915-9537948)
chr8 (365-402)||(27988590-27988627)
chr8 (365-402)||(28045892-28045929)
chr8 (303-348)||(30933451-30933496)
chr8 (416-483)||(16888552-16888620)
chr8 (416-483)||(34228792-34228860)
chr8 (423-493)||(13643128-13643199)
chr8 (423-493)||(13743553-13743624)
chr8 (423-493)||(43714186-43714257)
chr8 (424-493)||(2490155-2490225)
chr8 (416-493)||(4537742-4537820)
chr8 (307-349)||(32113934-32113976)
chr8 (365-399)||(37373263-37373297)
chr8 (369-402)||(168528-168561)
chr8 (369-402)||(7304609-7304642)
chr8 (365-402)||(10870410-10870447)
chr8 (369-402)||(11112701-11112734)
chr8 (369-402)||(12203916-12203949)
chr8 (369-402)||(12448344-12448377)
chr8 (369-402)||(16888635-16888668)
chr8 (416-492)||(27988499-27988575)
chr8 (416-492)||(28045801-28045877)
chr8 (312-349)||(28626799-28626836)
chr8 (369-402)||(29235297-29235330)
chr8 (416-461)||(29444171-29444216)
chr8 (369-402)||(30675663-30675696)
chr8 (369-402)||(33357220-33357253)
chr8 (369-402)||(34192837-34192870)
chr8 (369-402)||(36730506-36730539)
chr8 (416-483)||(2805268-2805336)
chr8 (365-397)||(2805356-2805388)
chr8 (416-491)||(7304518-7304594)
chr8 (416-483)||(16890488-16890556)
chr8 (416-483)||(20831561-20831629)
chr8 (370-402)||(21595909-21595941)
chr8 (370-402)||(22451847-22451879)
chr8 (325-353)||(29444254-29444282)
chr8 (416-460)||(33357161-33357205)
chr8 (416-483)||(36730554-36730621)
chr8 (423-482)||(39206303-39206363)
chr8 (370-402)||(39406905-39406937)
chr8 (423-494)||(40268039-40268111)
[»] chr1 (34 HSPs)
chr1 (365-402)||(3838868-3838905)
chr1 (365-402)||(8473005-8473042)
chr1 (416-495)||(47010103-47010183)
chr1 (416-493)||(18043272-18043350)
chr1 (416-493)||(51065746-51065824)
chr1 (369-402)||(14350368-14350401)
chr1 (416-492)||(45449243-45449320)
chr1 (365-402)||(48071540-48071577)
chr1 (416-483)||(24178471-24178539)
chr1 (313-349)||(37315385-37315421)
chr1 (416-483)||(38162960-38163028)
chr1 (416-483)||(42769998-42770066)
chr1 (369-489)||(52431643-52431765)
chr1 (416-493)||(5694431-5694509)
chr1 (416-493)||(15227849-15227927)
chr1 (312-402)||(19011058-19011151)
chr1 (416-493)||(29657881-29657959)
chr1 (416-461)||(3097769-3097814)
chr1 (423-483)||(3784721-3784782)
chr1 (424-461)||(13961329-13961366)
chr1 (280-349)||(17333400-17333469)
chr1 (369-402)||(18043224-18043257)
chr1 (365-398)||(24178558-24178591)
chr1 (373-402)||(28481906-28481935)
chr1 (369-402)||(29210475-29210508)
chr1 (369-402)||(30294472-30294505)
chr1 (369-402)||(35985712-35985745)
chr1 (369-402)||(36446416-36446449)
chr1 (369-402)||(38162912-38162945)
chr1 (423-491)||(38595752-38595821)
chr1 (369-402)||(42770081-42770114)
chr1 (369-402)||(50128263-50128296)
chr1 (416-483)||(12072070-12072138)
chr1 (309-349)||(30294499-30294539)
[»] chr2 (27 HSPs)
chr2 (416-455)||(10820592-10820631)
chr2 (365-493)||(27856394-27856524)
chr2 (416-493)||(3668111-3668189)
chr2 (416-493)||(20553041-20553119)
chr2 (369-402)||(5093630-5093663)
chr2 (308-349)||(15079076-15079117)
chr2 (416-491)||(22887860-22887936)
chr2 (416-483)||(30486320-30486388)
chr2 (423-493)||(22567719-22567790)
chr2 (416-489)||(1859272-1859346)
chr2 (423-461)||(15146748-15146786)
chr2 (369-402)||(561609-561642)
chr2 (369-402)||(2898133-2898166)
chr2 (369-402)||(3668204-3668237)
chr2 (369-402)||(4381857-4381890)
chr2 (423-495)||(5093536-5093608)
chr2 (416-492)||(22068319-22068396)
chr2 (369-402)||(26387155-26387188)
chr2 (369-402)||(26891754-26891787)
chr2 (369-402)||(31438708-31438741)
chr2 (369-402)||(34442623-34442656)
chr2 (369-402)||(39531886-39531919)
chr2 (369-402)||(43637226-43637259)
chr2 (416-483)||(4022487-4022555)
chr2 (416-483)||(8969415-8969483)
chr2 (424-491)||(31782565-31782633)
chr2 (416-483)||(32360877-32360945)
[»] scaffold0188 (1 HSPs)
scaffold0188 (416-493)||(6108-6186)
[»] scaffold0003 (2 HSPs)
scaffold0003 (417-493)||(53683-53760)
scaffold0003 (369-402)||(53776-53809)
[»] scaffold0034 (1 HSPs)
scaffold0034 (416-462)||(95615-95661)
[»] scaffold1266 (1 HSPs)
scaffold1266 (365-402)||(350-387)
[»] scaffold0524 (1 HSPs)
scaffold0524 (369-402)||(887-920)
[»] scaffold0425 (1 HSPs)
scaffold0425 (369-402)||(10772-10805)
[»] scaffold0264 (1 HSPs)
scaffold0264 (416-461)||(23071-23116)
[»] scaffold0113 (1 HSPs)
scaffold0113 (365-402)||(40977-41014)
[»] scaffold0050 (1 HSPs)
scaffold0050 (365-402)||(33772-33809)


Alignment Details
Target: chr5 (Bit Score: 179; Significance: 2e-96; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 4267602 - 4267813
Alignment:
Q  1 catagagtagtaaaatgaaacaaaaattatatttattaaatagattcaataattttgaaagtttaatacaatatcaattagtattattttatcaataata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4267602 catagagtagtaaaatgaaacaaaaattatatttattaaatagattcaataattttgaaagtttaatacaatatcaattagtattattttatcaataata 4267701  T
Q  101 tcctcaagtatttatcgtagaaaaataaatatgttgaatcagatagtaaaaactatccctgtcccttattcccctnnnnnnnttgtctctcttattaaag 200  Q
    ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||||       ||||||||||||||||||    
T  4267702 tcctcaagtatttatcgtagagaaataaatatgttgaatgagatagtaaaaactatccatgtcccttattcccctaaaaaaattgtctctcttattaaag 4267801  T
Q  201 acaatccaggaa 212  Q
    ||||||||||||    
T  4267802 acaatccaggaa 4267813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 203 - 496
Target Start/End: Original strand, 4268456 - 4268752
Alignment:
Q  203 aatccaggaaaattcacgggcattaagagaagtagttacggtaataaatttgtcaaaaaattgtattacttttacatatgggaaatgcaaaccggtgcat 302  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | | |||||||||    
T  4268456 aatccaggaaaattcacgggcattaagagaagtagttacggtaataaatttgtcaaaaaattgtattacttttatatatgggaaatactagccggtgcat 4268555  T
Q  303 -tggggtattggttaagcatgttaaaaaggaaattatatagtagttaacgca-nnnnnnnagggataatagttaatgcattaaaattgtgtaattaattt 400  Q
      || | |  |||||||||||||||||||||||||||||| |||||||  ||        ||||||| ||||||||||||||||||||||||||||||||    
T  4268556 ccggagcaccggttaagcatgttaaaaaggaaattatatattagttaatacattttttttagggatagtagttaatgcattaaaattgtgtaattaattt 4268655  T
Q  401 atnnnnnnnnnnnnncagtttacttttatggtaataattttcttttttggtatgtttaa-ccgtgcccacggggcaccggttagtatgacccttttg 496  Q
    ||             |||||| |||||||||||||||||||||||||||||||| |||| ||||| ||| |||||||||||||||||||||||||||    
T  4268656 ataaaaaataaaaaacagtttccttttatggtaataattttcttttttggtatgcttaacccgtgtccagggggcaccggttagtatgacccttttg 4268752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 416 - 492
Target Start/End: Original strand, 13661918 - 13661995
Alignment:
Q  416 cagtttacttttatggtaataattttcttttttggtatgtttaa-ccgtgcccacggggcaccggttagtatgaccct 492  Q
    |||||| ||||||||||||||||| |||||| ||||||| |||| ||||||||  | |||||||||||| | ||||||    
T  13661918 cagtttccttttatggtaataattctcttttatggtatgcttaacccgtgccccggaggcaccggttagcaggaccct 13661995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 416 - 492
Target Start/End: Complemental strand, 34650909 - 34650832
Alignment:
Q  416 cagtttacttttatggtaataattttcttttttggtatgtttaacc-gtgcccacggggcaccggttagtatgaccct 492  Q
    |||||| |||||||||||||||||  ||||| ||||||| |||||| ||||||  |||||||||||||| | ||||||    
T  34650909 cagtttccttttatggtaataattcccttttatggtatgcttaaccagtgccccgggggcaccggttagcaggaccct 34650832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 365 - 483
Target Start/End: Complemental strand, 10054480 - 10054361
Alignment:
Q  365 ataatagttaatgcattaaaattgtgtaattaatttatnnnnnnnnnnnnncagtttacttttatggtaataattttcttttttggtatgtttaa-ccgt 463  Q
    |||||| |||||||||| ||||||||||||||||||||             |||||| |||||||||||||||||   |||| |||||||||||| ||||    
T  10054480 ataataattaatgcattgaaattgtgtaattaatttataataatgtcaaaacagtttccttttatggtaataattcctttttatggtatgtttaacccgt 10054381  T
Q  464 gcccacggggcaccggttag 483  Q
    ||||  |||| |||||||||    
T  10054380 gccccgggggtaccggttag 10054361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 416 - 493
Target Start/End: Complemental strand, 11958043 - 11957965
Alignment:
Q  416 cagtttacttttatggtaataattttcttttttggtatgtttaacc-gtgcccacggggcaccggttagtatgaccctt 493  Q
    |||||| |||||||||||||||||  ||||| ||| ||| |||||| ||||||  |||||||||||||| | |||||||    
T  11958043 cagtttccttttatggtaataattcccttttatggcatgcttaaccagtgccccaggggcaccggttagcaggaccctt 11957965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 425 - 494
Target Start/End: Original strand, 35132640 - 35132710
Alignment:
Q  425 tttatggtaataattttcttttttggtatgtttaacc-gtgcccacggggcaccggttagtatgacccttt 494  Q
    ||||||||||||||| |||||| ||||||| ||||||  |||||  |||||||||||||| | ||||||||    
T  35132640 tttatggtaataattctcttttatggtatgcttaaccaatgccccgggggcaccggttagcaggacccttt 35132710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 402
Target Start/End: Original strand, 6283620 - 6283657
Alignment:
Q  365 ataatagttaatgcattaaaattgtgtaattaatttat 402  Q
    |||||| |||||||||| ||||||||||||||||||||    
T  6283620 ataataattaatgcattgaaattgtgtaattaatttat 6283657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 402
Target Start/End: Original strand, 8787401 - 8787434
Alignment:
Q  369 tagttaatgcattaaaattgtgtaattaatttat 402  Q
    ||||||||||||| ||||||||||||||||||||    
T  8787401 tagttaatgcattgaaattgtgtaattaatttat 8787434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 402
Target Start/End: Original strand, 12506358 - 12506391
Alignment:
Q  369 tagttaatgcattaaaattgtgtaattaatttat 402  Q
    ||||||||||||| ||||||||||||||||||||    
T  12506358 tagttaatgcattgaaattgtgtaattaatttat 12506391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 402
Target Start/End: Original strand, 20175289 - 20175322
Alignment:
Q  369 tagttaatgcattaaaattgtgtaattaatttat 402  Q
    ||||||||||||| ||||||||||||||||||||    
T  20175289 tagttaatgcattgaaattgtgtaattaatttat 20175322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 402
Target Start/End: Complemental strand, 21547518 - 21547485
Alignment:
Q  369 tagttaatgcattaaaattgtgtaattaatttat 402  Q
    ||||||||||||| ||||||||||||||||||||    
T  21547518 tagttaatgcattgaaattgtgtaattaatttat 21547485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 402
Target Start/End: Complemental strand, 34650957 - 34650924
Alignment:
Q  369 tagttaatgcattaaaattgtgtaattaatttat 402  Q
    ||||||||||||| ||||||||||||||||||||    
T  34650957 tagttaatgcattgaaattgtgtaattaatttat 34650924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 402
Target Start/End: Complemental strand, 35504364 - 35504331
Alignment:
Q  369 tagttaatgcattaaaattgtgtaattaatttat 402  Q
    ||||||||||||| ||||||||||||||||||||    
T  35504364 tagttaatgcattgaaattgtgtaattaatttat 35504331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 402
Target Start/End: Complemental strand, 40564528 - 40564495
Alignment:
Q  369 tagttaatgcattaaaattgtgtaattaatttat 402  Q
    ||||||||||||| ||||||||||||||||||||    
T  40564528 tagttaatgcattgaaattgtgtaattaatttat 40564495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 416 - 495
Target Start/End: Original strand, 8787449 - 8787529
Alignment:
Q  416 cagtttacttttatggtaataattttcttttttggtatgtttaacc-gtgcccacggggcaccggttagtatgaccctttt 495  Q
    |||||| |||||||| ||||||||   |||| ||||||| |||||| ||||||  |||||||||||||| | |||||||||    
T  8787449 cagtttccttttatgataataattccattttatggtatgcttaacctgtgccccgggggcaccggttagcaggaccctttt 8787529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 31)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 416 - 493
Target Start/End: Original strand, 30810765 - 30810843
Alignment:
Q  416 cagtttacttttatggtaataattttcttttttggtatgtttaacc-gtgcccacggggcaccggttagtatgaccctt 493  Q
    |||||| |||||||||||||||||||||||| ||||||||||||||  |||||  |||| ||||||||||| |||||||    
T  30810765 cagttttcttttatggtaataattttcttttatggtatgtttaaccaatgccccaggggtaccggttagtaggaccctt 30810843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 416 - 492
Target Start/End: Complemental strand, 42044369 - 42044293
Alignment:
Q  416 cagtttacttttatggtaataattttcttttttggtatgtttaacc-gtgcccacggggcaccggttagtatgaccct 492  Q
    |||||| |||||||||||||||||  ||||| |||||||||||||| |||||| ||||||||||||||| ||||||||    
T  42044369 cagttttcttttatggtaataattcccttttatggtatgtttaaccagtgccc-cggggcaccggttagcatgaccct 42044293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 417 - 493
Target Start/End: Complemental strand, 12218511 - 12218435
Alignment:
Q  417 agtttacttttatggtaataattttcttttttggtatgtttaacc-gtgcccacggggcaccggttagtatgaccctt 493  Q
    ||||| ||||||||||||||||| |||||| |||||||||||||| |||||| |||| |||||||||| | |||||||    
T  12218511 agtttccttttatggtaataattctcttttatggtatgtttaaccagtgccc-cgggacaccggttagcaggaccctt 12218435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 372 - 493
Target Start/End: Original strand, 34333349 - 34333471
Alignment:
Q  372 ttaatgcattaaaattgtgtaattaatttatnnnnnnnnnnnnncagtttacttttatggtaataattttcttttttggtatgtttaa-ccgtgcccacg 470  Q
    |||||||||| ||||||||||||||||||||             |||||| |||||||||||||||||   |||| |||||||||||| ||||||||  |    
T  34333349 ttaatgcattgaaattgtgtaattaatttataataatgtcaaaacagtttccttttatggtaataattcctttttatggtatgtttaacccgtgccccgg 34333448  T
Q  471 gggcaccggttagtatgaccctt 493  Q
    ||||||||||||| | |||||||    
T  34333449 gggcaccggttagcaggaccctt 34333471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 416 - 483
Target Start/End: Original strand, 4628676 - 4628744
Alignment:
Q  416 cagtttacttttatggtaataattttcttttttggtatgtttaacc-gtgcccacggggcaccggttag 483  Q
    ||||||||||||||||||||||||  ||||| ||||||| |||||| |||||   ||||||||||||||    
T  4628676 cagtttacttttatggtaataattcccttttatggtatgcttaaccagtgccttaggggcaccggttag 4628744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 416 - 483
Target Start/End: Original strand, 24438587 - 24438655
Alignment:
Q  416 cagtttacttttatggtaataattttcttttttggtatgtttaacc-gtgcccacggggcaccggttag 483  Q
    |||||| |||||||||||||||||  ||||| ||||||| |||||| ||||||  ||||||||||||||    
T  24438587 cagtttccttttatggtaataattcccttttatggtatgcttaaccagtgccccgggggcaccggttag 24438655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 423 - 494
Target Start/End: Original strand, 38128409 - 38128481
Alignment:
Q  423 cttttatggtaataattttcttttttggtatgtttaacc-gtgcccacggggcaccggttagtatgacccttt 494  Q
    |||||||||||| ||||| ||||||| ||||| |||||| ||||||  | |||||||||||| ||||||||||    
T  38128409 cttttatggtaagaatttcctttttttgtatgcttaaccagtgccccggaggcaccggttagcatgacccttt 38128481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 423 - 493
Target Start/End: Original strand, 19434611 - 19434681
Alignment:
Q  423 cttttatggtaataattttcttttttggtatgtttaacc-gtgcccacggggcaccggttagtatgaccctt 493  Q
    |||||||||||| ||||||||||||| ||||| |||||| ||||||  ||||||||||| || |||||||||    
T  19434611 cttttatggtaagaattttctttttttgtatgcttaaccagtgccc-gggggcaccggtcagcatgaccctt 19434681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 311 - 349
Target Start/End: Original strand, 4087653 - 4087691
Alignment:
Q  311 tggttaagcatgttaaaaaggaaattatatagtagttaa 349  Q
    |||||||||||  ||||||||||||||||||||||||||    
T  4087653 tggttaagcatactaaaaaggaaattatatagtagttaa 4087691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 416 - 461
Target Start/End: Complemental strand, 525151 - 525106
Alignment:
Q  416 cagtttacttttatggtaataattttcttttttggtatgtttaacc 461  Q
    |||||| ||||||||||||||||| |||||| || |||||||||||    
T  525151 cagtttccttttatggtaataattctcttttatgatatgtttaacc 525106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 349
Target Start/End: Original strand, 3021922 - 3021959
Alignment:
Q  312 ggttaagcatgttaaaaaggaaattatatagtagttaa 349  Q
    |||||||||| ||||||||||||||||||| |||||||    
T  3021922 ggttaagcatattaaaaaggaaattatatactagttaa 3021959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 402
Target Start/End: Original strand, 5239347 - 5239380
Alignment:
Q  369 tagttaatgcattaaaattgtgtaattaatttat 402  Q
    ||||||||||||| ||||||||||||||||||||    
T  5239347 tagttaatgcattgaaattgtgtaattaatttat 5239380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 402
Target Start/End: Complemental strand, 8754709 - 8754676
Alignment:
Q  369 tagttaatgcattaaaattgtgtaattaatttat 402  Q
    ||||||||||||| ||||||||||||||||||||    
T  8754709 tagttaatgcattgaaattgtgtaattaatttat 8754676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 402
Target Start/End: Complemental strand, 11686448 - 11686415
Alignment:
Q  369 tagttaatgcattaaaattgtgtaattaatttat 402  Q
    ||||||||||||| ||||||||||||||||||||    
T  11686448 tagttaatgcattgaaattgtgtaattaatttat 11686415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 402
Target Start/End: Complemental strand, 12218560 - 12218527
Alignment:
Q  369 tagttaatgcattaaaattgtgtaattaatttat 402  Q
    ||||||||||||| ||||||||||||||||||||    
T  12218560 tagttaatgcattgaaattgtgtaattaatttat 12218527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 402
Target Start/End: Original strand, 22739885 - 22739918
Alignment:
Q  369 tagttaatgcattaaaattgtgtaattaatttat 402  Q
    ||||||||||||| ||||||||||||||||||||    
T  22739885 tagttaatgcattgaaattgtgtaattaatttat 22739918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 416 - 461
Target Start/End: Complemental strand, 23363243 - 23363198
Alignment:
Q  416 cagtttacttttatggtaataattttcttttttggtatgtttaacc 461  Q
    |||||| |||||||||||||| || |||||| ||||||||||||||    
T  23363243 cagtttccttttatggtaatatttctcttttatggtatgtttaacc 23363198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 402
Target Start/End: Complemental strand, 23363291 - 23363258
Alignment:
Q  369 tagttaatgcattaaaattgtgtaattaatttat 402  Q
    ||||||||||||| ||||||||||||||||||||    
T  23363291 tagttaatgcattgaaattgtgtaattaatttat 23363258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 402
Target Start/End: Complemental strand, 24798527 - 24798494
Alignment:
Q  369 tagttaatgcattaaaattgtgtaattaatttat 402  Q
    ||||||||||||| ||||||||||||||||||||    
T  24798527 tagttaatgcattgaaattgtgtaattaatttat 24798494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 402
Target Start/End: Complemental strand, 27456237 - 27456204
Alignment:
Q  369 tagttaatgcattaaaattgtgtaattaatttat 402  Q
    ||||||||||||| ||||||||||||||||||||    
T  27456237 tagttaatgcattgaaattgtgtaattaatttat 27456204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 402
Target Start/End: Complemental strand, 29993611 - 29993578
Alignment:
Q  369 tagttaatgcattaaaattgtgtaattaatttat 402  Q
    ||||||||||||| ||||||||||||||||||||    
T  29993611 tagttaatgcattgaaattgtgtaattaatttat 29993578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 402
Target Start/End: Original strand, 30810717 - 30810750
Alignment:
Q  369 tagttaatgcattaaaattgtgtaattaatttat 402  Q
    ||||||||||||| ||||||||||||||||||||    
T  30810717 tagttaatgcattgaaattgtgtaattaatttat 30810750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 402
Target Start/End: Complemental strand, 34546438 - 34546405
Alignment:
Q  369 tagttaatgcattaaaattgtgtaattaatttat 402  Q
    ||||||||||||| ||||||||||||||||||||    
T  34546438 tagttaatgcattgaaattgtgtaattaatttat 34546405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 416 - 492
Target Start/End: Original strand, 34606371 - 34606448
Alignment:
Q  416 cagtttacttttatggtaataattttcttttttggtatgtttaa-ccgtgcccacggggcaccggttagtatgaccct 492  Q
    |||||| |||||||||||||||||  ||||| ||||||| |||| ||||||||  || ||||||||||| | ||||||    
T  34606371 cagtttccttttatggtaataattaccttttatggtatgcttaacccgtgccccgggagcaccggttagcaggaccct 34606448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 402
Target Start/End: Complemental strand, 37631670 - 37631633
Alignment:
Q  365 ataatagttaatgcattaaaattgtgtaattaatttat 402  Q
    |||||| |||||||||||||||| ||||||||||||||    
T  37631670 ataataattaatgcattaaaattatgtaattaatttat 37631633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 402
Target Start/End: Complemental strand, 37674228 - 37674195
Alignment:
Q  369 tagttaatgcattaaaattgtgtaattaatttat 402  Q
    ||||||||||||| ||||||||||||||||||||    
T  37674228 tagttaatgcattgaaattgtgtaattaatttat 37674195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 402
Target Start/End: Complemental strand, 43594164 - 43594127
Alignment:
Q  365 ataatagttaatgcattaaaattgtgtaattaatttat 402  Q
    ||||||||||||||||| ||||||| ||||||||||||    
T  43594164 ataatagttaatgcattgaaattgtataattaatttat 43594127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 402
Target Start/End: Original strand, 47839550 - 47839587
Alignment:
Q  365 ataatagttaatgcattaaaattgtgtaattaatttat 402  Q
    |||||||||||| |||| ||||||||||||||||||||    
T  47839550 ataatagttaatacattgaaattgtgtaattaatttat 47839587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 278 - 349
Target Start/End: Complemental strand, 8754775 - 8754703
Alignment:
Q  278 atatgggaaatgcaaaccggtgcattggg-gtattggttaagcatgttaaaaaggaaattatatagtagttaa 349  Q
    ||||||||||||| |||||||||  |||| | | |||||||| || | ||||| |||||||||||||||||||    
T  8754775 atatgggaaatgctaaccggtgccctgggagcactggttaaggatatgaaaaatgaaattatatagtagttaa 8754703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 416 - 483
Target Start/End: Complemental strand, 13064952 - 13064884
Alignment:
Q  416 cagtttacttttatggtaataattttcttttttggtatgtttaacc-gtgcccacggggcaccggttag 483  Q
    |||||| |||||||||||||||||  ||||| ||||||| |||||| |||| |  ||||||||||||||    
T  13064952 cagtttccttttatggtaataattcccttttatggtatgcttaaccagtgctctaggggcaccggttag 13064884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 416 - 491
Target Start/End: Original strand, 22739934 - 22740010
Alignment:
Q  416 cagtttacttttatggtaataattttcttttttggtatgtttaac-cgtgcccacggggcaccggttagtatgaccc 491  Q
    |||||| ||||||||||||||||||| |||||| ||||| ||| |  |||||  ||||| ||||||||| |||||||    
T  22739934 cagttttcttttatggtaataattttatttttttgtatgcttagctagtgcctccggggtaccggttagcatgaccc 22740010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 28)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 416 - 493
Target Start/End: Original strand, 392206 - 392284
Alignment:
Q  416 cagtttacttttatggtaataattttcttttttggtatgtttaacc-gtgcccacggggcaccggttagtatgaccctt 493  Q
    |||||| ||||||||||||||||| |||||| ||||||| |||||| ||||||  |||||||||||||| | |||||||    
T  392206 cagtttccttttatggtaataattctcttttatggtatgcttaaccagtgccccgggggcaccggttagcaggaccctt 392284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 416 - 483
Target Start/End: Original strand, 3515876 - 3515944
Alignment:
Q  416 cagtttacttttatggtaataattttcttttttggtatgtttaacc-gtgcccacggggcaccggttag 483  Q
    |||||| |||||||||||||||||  ||||| |||||||||||||| ||||||  ||||||||||||||    
T  3515876 cagtttccttttatggtaataattcccttttatggtatgtttaacctgtgccccaggggcaccggttag 3515944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 278 - 349
Target Start/End: Complemental strand, 32985383 - 32985311
Alignment:
Q  278 atatgggaaatgcaaaccggtgcatt-ggggtattggttaagcatgttaaaaaggaaattatatagtagttaa 349  Q
    |||||| ||||||||||||||||  | |||| |||||||||| || | |||||||||||||||||||||||||    
T  32985383 atatggaaaatgcaaaccggtgccctcggggcattggttaaggatataaaaaaggaaattatatagtagttaa 32985311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 416 - 491
Target Start/End: Original strand, 35043999 - 35044074
Alignment:
Q  416 cagtttacttttatggtaataattttcttttttggtatgtttaacc-gtgcccacggggcaccggttagtatgaccc 491  Q
    |||||| ||||||||||||||||| |||||| ||||||| |||||| |||||| ||||||||||||||  |||||||    
T  35043999 cagttttcttttatggtaataattctcttttatggtatgcttaaccagtgccc-cggggcaccggttaacatgaccc 35044074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 365 - 493
Target Start/End: Original strand, 4215753 - 4215883
Alignment:
Q  365 ataatagttaatgcattaaaattgtgtaattaatttatnnnnnnnnnnnnn-cagtttacttttatggtaataattttcttttttggtatgtttaacc-g 462  Q
    ||||||||||||||||| ||||||||||||||||||||              |||||| |||||||||||||||||| ||||| ||||||| |||||| |    
T  4215753 ataatagttaatgcattgaaattgtgtaattaatttataataatgtcaaaaacagtttccttttatggtaataatttccttttatggtatgcttaaccag 4215852  T
Q  463 tgcccacggggcaccggttagtatgaccctt 493  Q
    |||||  |||||| ||||||| | |||||||    
T  4215853 tgccccgggggcatcggttagcaggaccctt 4215883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 416 - 493
Target Start/End: Complemental strand, 32929584 - 32929506
Alignment:
Q  416 cagtttacttttatggtaataattttcttttttggtatgtttaacc-gtgcccacggggcaccggttagtatgaccctt 493  Q
    |||||| |||||||||||||||||  ||||| ||||||| |||||| ||||||  |||||||||||||| | |||||||    
T  32929584 cagtttccttttatggtaataattcccttttatggtatgcttaaccagtgccccgggggcaccggttagcaggaccctt 32929506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 417 - 493
Target Start/End: Complemental strand, 26467199 - 26467122
Alignment:
Q  417 agtttacttttatggtaataattttcttttttggtatgtttaacc-gtgcccacggggcaccggttagtatgaccctt 493  Q
    ||||| |||||||||||||||||  ||||| |||||||| ||||| ||||||  | |||||||||||| |||||||||    
T  26467199 agtttccttttatggtaataattcccttttatggtatgtctaaccagtgccccggaggcaccggttagcatgaccctt 26467122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 369 - 402
Target Start/End: Original strand, 27433554 - 27433587
Alignment:
Q  369 tagttaatgcattaaaattgtgtaattaatttat 402  Q
    ||||||||||||||||||||||||||||||||||    
T  27433554 tagttaatgcattaaaattgtgtaattaatttat 27433587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 417 - 493
Target Start/End: Original strand, 27433603 - 27433680
Alignment:
Q  417 agtttacttttatggtaataattttcttttttggtatgtttaa-ccgtgcccacggggcaccggttagtatgaccctt 493  Q
    ||||| |||||||||||||||||  ||||| |||||||||||| |||| |||  |||||||||||||| | |||||||    
T  27433603 agtttccttttatggtaataattcccttttatggtatgtttaacccgttccccgggggcaccggttagcaagaccctt 27433680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 282 - 349
Target Start/End: Complemental strand, 1391363 - 1391296
Alignment:
Q  282 gggaaatgcaaaccggtgcattggggtattggttaagcatgttaaaaaggaaattatatagtagttaa 349  Q
    ||||||||| |||||||||   |||||| || ||||| || | |||||||||||||||||||||||||    
T  1391363 gggaaatgctaaccggtgctccggggtactgattaaggatatgaaaaaggaaattatatagtagttaa 1391296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 279 - 349
Target Start/End: Original strand, 2580949 - 2581020
Alignment:
Q  279 tatgggaaatgcaaaccggtgca-ttggggtattggttaagcatgttaaaaaggaaattatatagtagttaa 349  Q
    |||||||||||| |||||||||  ||| |||| |||||||  || | |||||||||||||||||||||||||    
T  2580949 tatgggaaatgctaaccggtgcccttgaggtactggttaatgatataaaaaaggaaattatatagtagttaa 2581020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 369 - 399
Target Start/End: Original strand, 961071 - 961101
Alignment:
Q  369 tagttaatgcattaaaattgtgtaattaatt 399  Q
    |||||||||||||||||||||||||||||||    
T  961071 tagttaatgcattaaaattgtgtaattaatt 961101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 424 - 485
Target Start/End: Original strand, 1127934 - 1127996
Alignment:
Q  424 ttttatggtaataattttcttttttggtatgtttaacc-gtgcccacggggcaccggttagta 485  Q
    ||||||||||| ||||||||||||| ||||| |||||| ||||||   |||||||||||||||    
T  1127934 ttttatggtaagaattttctttttttgtatgcttaaccagtgccccgagggcaccggttagta 1127996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 372 - 402
Target Start/End: Complemental strand, 7851280 - 7851250
Alignment:
Q  372 ttaatgcattaaaattgtgtaattaatttat 402  Q
    |||||||||||||||||||||||||||||||    
T  7851280 ttaatgcattaaaattgtgtaattaatttat 7851250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 311 - 349
Target Start/End: Original strand, 13529485 - 13529523
Alignment:
Q  311 tggttaagcatgttaaaaaggaaattatatagtagttaa 349  Q
    |||||||| |||| |||||||||||||||||||||||||    
T  13529485 tggttaaggatgtgaaaaaggaaattatatagtagttaa 13529523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 416 - 493
Target Start/End: Original strand, 23402248 - 23402326
Alignment:
Q  416 cagtttacttttatggtaataattttcttttttggtatgtttaa-ccgtgcccacggggcaccggttagtatgaccctt 493  Q
    |||||| |||||||||||||||||  ||||| ||||||| |||| ||||||||  | |||||||||||| | |||||||    
T  23402248 cagtttccttttatggtaataattaccttttatggtatgcttaacccgtgccccggaggcaccggttagcaggaccctt 23402326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 423 - 492
Target Start/End: Original strand, 34706838 - 34706908
Alignment:
Q  423 cttttatggtaataattttcttttttggtatgtttaacc-gtgcccacggggcaccggttagtatgaccct 492  Q
    |||||||||||| ||||| ||||||| ||||| |||||| ||||||  |||||||||||||| | ||||||    
T  34706838 cttttatggtaagaatttccttttttcgtatgcttaaccagtgccccgggggcaccggttagcaagaccct 34706908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 402
Target Start/End: Original strand, 392158 - 392191
Alignment:
Q  369 tagttaatgcattaaaattgtgtaattaatttat 402  Q
    ||||||||||||| ||||||||||||||||||||    
T  392158 tagttaatgcattgaaattgtgtaattaatttat 392191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 402
Target Start/End: Complemental strand, 1840375 - 1840338
Alignment:
Q  365 ataatagttaatgcattaaaattgtgtaattaatttat 402  Q
    |||||| |||||| ||||||||||||||||||||||||    
T  1840375 ataataattaatgtattaaaattgtgtaattaatttat 1840338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 402
Target Start/End: Original strand, 3515828 - 3515861
Alignment:
Q  369 tagttaatgcattaaaattgtgtaattaatttat 402  Q
    ||||||||||||| ||||||||||||||||||||    
T  3515828 tagttaatgcattgaaattgtgtaattaatttat 3515861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 417 - 485
Target Start/End: Complemental strand, 11115172 - 11115104
Alignment:
Q  417 agtttacttttatggtaataattttcttttttggtatgtttaacc-gtgcccacggggcaccggttagta 485  Q
    ||||| |||||||||||||||||  ||||| || ||||||||||| |||||| |||| ||||||||||||    
T  11115172 agttttcttttatggtaataattcccttttatgatatgtttaaccagtgccc-cgggacaccggttagta 11115104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 402
Target Start/End: Complemental strand, 11115223 - 11115186
Alignment:
Q  365 ataatagttaatgcattaaaattgtgtaattaatttat 402  Q
    |||||||||||| |||| ||||||||||||||||||||    
T  11115223 ataatagttaatacattgaaattgtgtaattaatttat 11115186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 402
Target Start/End: Complemental strand, 12145241 - 12145208
Alignment:
Q  369 tagttaatgcattaaaattgtgtaattaatttat 402  Q
    ||||||||||||| ||||||||||||||||||||    
T  12145241 tagttaatgcattgaaattgtgtaattaatttat 12145208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 402
Target Start/End: Original strand, 13529517 - 13529550
Alignment:
Q  369 tagttaatgcattaaaattgtgtaattaatttat 402  Q
    ||||||||||||| ||||||||||||||||||||    
T  13529517 tagttaatgcattgaaattgtgtaattaatttat 13529550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 402
Target Start/End: Complemental strand, 26467248 - 26467215
Alignment:
Q  369 tagttaatgcattaaaattgtgtaattaatttat 402  Q
    ||||||||||||| ||||||||||||||||||||    
T  26467248 tagttaatgcattgaaattgtgtaattaatttat 26467215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 402
Target Start/End: Complemental strand, 34396651 - 34396618
Alignment:
Q  369 tagttaatgcattaaaattgtgtaattaatttat 402  Q
    ||||||||||||| ||||||||||||||||||||    
T  34396651 tagttaatgcattgaaattgtgtaattaatttat 34396618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 365 - 401
Target Start/End: Original strand, 9661044 - 9661080
Alignment:
Q  365 ataatagttaatgcattaaaattgtgtaattaattta 401  Q
    ||||||||||||||||| ||||||| |||||||||||    
T  9661044 ataatagttaatgcattgaaattgtataattaattta 9661080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 282 - 349
Target Start/End: Original strand, 12525719 - 12525787
Alignment:
Q  282 gggaaatgcaaaccggtgcatt-ggggtattggttaagcatgttaaaaaggaaattatatagtagttaa 349  Q
    ||||||||| ||||||||| |  |||||| ||||||||  | | |||||||||||||||||||||||||    
T  12525719 gggaaatgctaaccggtgcctccggggtactggttaagggtatgaaaaaggaaattatatagtagttaa 12525787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 416 - 493
Target Start/End: Original strand, 4089252 - 4089330
Alignment:
Q  416 cagtttacttttatggtaataattttcttttttggtatgtttaacc-gtgcccacggggcaccggttagtatgaccctt 493  Q
    |||||| ||||||||||||||||| |||||| |||||||||||||| ||||||  |||||||| ||||| | |||||||    
T  4089252 cagtttccttttatggtaataattctcttttatggtatgtttaaccagtgccccaggggcaccagttagcaggaccctt 4089330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 416 - 492
Target Start/End: Original strand, 16820962 - 16821039
Alignment:
Q  416 cagtttacttttatggtaataattttcttttttggtatgtttaacc-gtgcccacggggcaccggttagtatgaccct 492  Q
    |||||| |||||||||||||||||| ||||| ||||||| |||||| ||||||  |||||||||||||| | ||||||    
T  16820962 cagtttccttttatggtaataatttccttttatggtatgcttaaccagtgccccgggggcaccggttagcaggaccct 16821039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 416 - 461
Target Start/End: Original strand, 41265568 - 41265613
Alignment:
Q  416 cagtttacttttatggtaataattttcttttttggtatgtttaacc 461  Q
    |||||| ||||||| |||||||||||||||||||||||||||||||    
T  41265568 cagttttcttttattgtaataattttcttttttggtatgtttaacc 41265613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 417 - 493
Target Start/End: Complemental strand, 18067954 - 18067877
Alignment:
Q  417 agtttacttttatggtaataattttcttttttggtatgtttaa-ccgtgcccacggggcaccggttagtatgaccctt 493  Q
    ||||| |||||||||||||||||  ||||| |||||||||||| |||| |||  |||||||||||||| | |||||||    
T  18067954 agtttccttttatggtaataattcccttttatggtatgtttaacccgttccccgggggcaccggttagcaagaccctt 18067877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 369 - 402
Target Start/End: Complemental strand, 18068003 - 18067970
Alignment:
Q  369 tagttaatgcattaaaattgtgtaattaatttat 402  Q
    ||||||||||||||||||||||||||||||||||    
T  18068003 tagttaatgcattaaaattgtgtaattaatttat 18067970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 369 - 402
Target Start/End: Original strand, 53268782 - 53268815
Alignment:
Q  369 tagttaatgcattaaaattgtgtaattaatttat 402  Q
    ||||||||||||||||||||||||||||||||||    
T  53268782 tagttaatgcattaaaattgtgtaattaatttat 53268815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 416 - 495
Target Start/End: Original strand, 7769048 - 7769128
Alignment:
Q  416 cagtttacttttatggtaataattttcttttttggtatgtttaa-ccgtgcccacggggcaccggttagtatgaccctttt 495  Q
    |||||| ||||||||||||||||| |||||| ||| ||  |||| ||||||||  |||||||||||||| | |||||||||    
T  7769048 cagtttccttttatggtaataattctcttttatggcatacttaacccgtgccccgggggcaccggttagcaggaccctttt 7769128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 416 - 495
Target Start/End: Complemental strand, 43202459 - 43202380
Alignment:
Q  416 cagtttacttttatggtaataattttcttttttggtatgtttaacc-gtgcccacggggcaccggttagtatgaccctttt 495  Q
    |||||| ||||||||||||||||| |||||| ||||| | |||||| ||||||  |||||||||||||| | |||||||||    
T  43202459 cagttttcttttatggtaataattctcttttatggtaagcttaaccagtgccc-gggggcaccggttagcaggaccctttt 43202380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 416 - 483
Target Start/End: Original strand, 50619196 - 50619263
Alignment:
Q  416 cagtttacttttatggtaataattttcttttttggtatgtttaacc-gtgcccacggggcaccggttag 483  Q
    |||||| |||||||||||||||||  ||||| ||||||| |||||| ||||||| ||||||||||||||    
T  50619196 cagtttccttttatggtaataattcccttttatggtatgcttaaccagtgccca-ggggcaccggttag 50619263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 416 - 493
Target Start/End: Original strand, 16536158 - 16536236
Alignment:
Q  416 cagtttacttttatggtaataattttcttttttggtatgtttaacc-gtgcccacggggcaccggttagtatgaccctt 493  Q
    |||||| ||||||||||||||||| | |||| ||||||  |||||| ||||||  |||||||||||||| | |||||||    
T  16536158 cagtttccttttatggtaataattctattttatggtattcttaaccagtgccccgggggcaccggttagcaggaccctt 16536236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 416 - 493
Target Start/End: Original strand, 29591299 - 29591377
Alignment:
Q  416 cagtttacttttatggtaataattttcttttttggtatgtttaac-cgtgcccacggggcaccggttagtatgaccctt 493  Q
    |||||| |||||||||||||||||  ||||| ||||||| |||||  ||||||  |||||||||||||| | |||||||    
T  29591299 cagtttccttttatggtaataattaccttttatggtatgcttaactagtgccccgggggcaccggttagcaggaccctt 29591377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 372 - 402
Target Start/End: Complemental strand, 43202504 - 43202474
Alignment:
Q  372 ttaatgcattaaaattgtgtaattaatttat 402  Q
    |||||||||||||||||||||||||||||||    
T  43202504 ttaatgcattaaaattgtgtaattaatttat 43202474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 423 - 461
Target Start/End: Original strand, 54897425 - 54897463
Alignment:
Q  423 cttttatggtaataattttcttttttggtatgtttaacc 461  Q
    |||||||||||||||||| ||||| ||||||||||||||    
T  54897425 cttttatggtaataatttccttttatggtatgtttaacc 54897463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 402
Target Start/End: Complemental strand, 789654 - 789621
Alignment:
Q  369 tagttaatgcattaaaattgtgtaattaatttat 402  Q
    ||||||||||||| ||||||||||||||||||||    
T  789654 tagttaatgcattgaaattgtgtaattaatttat 789621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 402
Target Start/End: Original strand, 4089204 - 4089237
Alignment:
Q  369 tagttaatgcattaaaattgtgtaattaatttat 402  Q
    ||||||||||||| ||||||||||||||||||||    
T  4089204 tagttaatgcattgaaattgtgtaattaatttat 4089237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 402
Target Start/End: Original strand, 6164155 - 6164188
Alignment:
Q  369 tagttaatgcattaaaattgtgtaattaatttat 402  Q
    ||||||||||||| ||||||||||||||||||||    
T  6164155 tagttaatgcattgaaattgtgtaattaatttat 6164188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 416 - 461
Target Start/End: Original strand, 6164203 - 6164248
Alignment:
Q  416 cagtttacttttatggtaataattttcttttttggtatgtttaacc 461  Q
    |||||| ||||||||||||||||| |||||| ||||||| ||||||    
T  6164203 cagtttccttttatggtaataattctcttttatggtatgcttaacc 6164248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 402
Target Start/End: Original strand, 16536110 - 16536143
Alignment:
Q  369 tagttaatgcattaaaattgtgtaattaatttat 402  Q
    ||||||||||||| ||||||||||||||||||||    
T  16536110 tagttaatgcattgaaattgtgtaattaatttat 16536143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 402
Target Start/End: Complemental strand, 30387258 - 30387225
Alignment:
Q  369 tagttaatgcattaaaattgtgtaattaatttat 402  Q
    ||||||||||||| ||||||||||||||||||||    
T  30387258 tagttaatgcattgaaattgtgtaattaatttat 30387225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 402
Target Start/End: Complemental strand, 31680591 - 31680554
Alignment:
Q  365 ataatagttaatgcattaaaattgtgtaattaatttat 402  Q
    ||||||||||||||||| ||||||| ||||||||||||    
T  31680591 ataatagttaatgcattgaaattgtataattaatttat 31680554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 402
Target Start/End: Complemental strand, 32202604 - 32202571
Alignment:
Q  369 tagttaatgcattaaaattgtgtaattaatttat 402  Q
    ||||||||||||| ||||||||||||||||||||    
T  32202604 tagttaatgcattgaaattgtgtaattaatttat 32202571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 402
Target Start/End: Original strand, 32217107 - 32217140
Alignment:
Q  369 tagttaatgcattaaaattgtgtaattaatttat 402  Q
    ||||||||||||| ||||||||||||||||||||    
T  32217107 tagttaatgcattgaaattgtgtaattaatttat 32217140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 402
Target Start/End: Original strand, 36395161 - 36395194
Alignment:
Q  369 tagttaatgcattaaaattgtgtaattaatttat 402  Q
    ||||||||||||| ||||||||||||||||||||    
T  36395161 tagttaatgcattgaaattgtgtaattaatttat 36395194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 402
Target Start/End: Complemental strand, 42898870 - 42898837
Alignment:
Q  369 tagttaatgcattaaaattgtgtaattaatttat 402  Q
    ||||||||||||| ||||||||||||||||||||    
T  42898870 tagttaatgcattgaaattgtgtaattaatttat 42898837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 402
Target Start/End: Original strand, 43944569 - 43944602
Alignment:
Q  369 tagttaatgcattaaaattgtgtaattaatttat 402  Q
    ||||||||||||| ||||||||||||||||||||    
T  43944569 tagttaatgcattgaaattgtgtaattaatttat 43944602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 424 - 461
Target Start/End: Original strand, 46149057 - 46149094
Alignment:
Q  424 ttttatggtaataattttcttttttggtatgtttaacc 461  Q
    |||||||||||||||| |||||| ||||||||||||||    
T  46149057 ttttatggtaataattctcttttatggtatgtttaacc 46149094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 402
Target Start/End: Complemental strand, 46688329 - 46688296
Alignment:
Q  369 tagttaatgcattaaaattgtgtaattaatttat 402  Q
    ||||||||||||| ||||||||||||||||||||    
T  46688329 tagttaatgcattgaaattgtgtaattaatttat 46688296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 402
Target Start/End: Original strand, 50167651 - 50167684
Alignment:
Q  369 tagttaatgcattaaaattgtgtaattaatttat 402  Q
    ||||||||||||| ||||||||||||||||||||    
T  50167651 tagttaatgcattgaaattgtgtaattaatttat 50167684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 402
Target Start/End: Original strand, 50603285 - 50603322
Alignment:
Q  365 ataatagttaatgcattaaaattgtgtaattaatttat 402  Q
    |||||| |||||||||| ||||||||||||||||||||    
T  50603285 ataataattaatgcattgaaattgtgtaattaatttat 50603322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 416 - 461
Target Start/End: Complemental strand, 52533861 - 52533816
Alignment:
Q  416 cagtttacttttatggtaataattttcttttttggtatgtttaacc 461  Q
    |||||| |||||||||||||||||  ||||| ||||||||||||||    
T  52533861 cagtttccttttatggtaataattcccttttatggtatgtttaacc 52533816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 402
Target Start/End: Complemental strand, 53656006 - 53655969
Alignment:
Q  365 ataatagttaatgcattaaaattgtgtaattaatttat 402  Q
    ||||||||||||| ||| ||||||||||||||||||||    
T  53656006 ataatagttaatgtattgaaattgtgtaattaatttat 53655969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 423 - 482
Target Start/End: Complemental strand, 28120118 - 28120058
Alignment:
Q  423 cttttatggtaataattttcttttttggtatgtttaacc-gtgcccacggggcaccggtta 482  Q
    |||||||||||| ||||| ||||||| ||||| |||||| ||||||  |||||||||||||    
T  28120118 cttttatggtaagaatttcctttttttgtatgcttaacctgtgccccgggggcaccggtta 28120058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 369 - 493
Target Start/End: Original strand, 39074481 - 39074606
Alignment:
Q  369 tagttaatgcattaaaattgtgtaattaatttatnnnnnnnnnnnnncagtttacttttatggtaataattttcttttttggtatgtttaacc-gtgccc 467  Q
    ||||||||||||| ||||||||||||||||||||             |||||| |||||||||||||||||  ||||| ||||||| |||||| ||||||    
T  39074481 tagttaatgcattgaaattgtgtaattaatttataataatgtcaaaacagtttccttttatggtaataattcccttttatggtatgcttaaccagtgccc 39074580  T
Q  468 acggggcaccggttagtatgaccctt 493  Q
      |||||||||||||| | |||||||    
T  39074581 caggggcaccggttagcaggaccctt 39074606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 416 - 483
Target Start/End: Original strand, 858699 - 858767
Alignment:
Q  416 cagtttacttttatggtaataattttcttttttggtatgtttaa-ccgtgcccacggggcaccggttag 483  Q
    |||||| |||||||||||||||||| ||||| ||||||| |||| ||||||||  ||||||||||||||    
T  858699 cagtttccttttatggtaataatttccttttatggtatgcttaacccgtgccccgggggcaccggttag 858767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 416 - 495
Target Start/End: Original strand, 52520791 - 52520871
Alignment:
Q  416 cagtttacttttatggtaataattttcttttttggtatgtttaacc-gtgcccacggggcaccggttagtatgaccctttt 495  Q
    |||||| ||||||||||||||||| | |||| ||||||| |||||| ||||||  |||||||||||||| | |||||||||    
T  52520791 cagtttccttttatggtaataattctattttatggtatgcttaaccagtgccccgggggcaccggttagcaggaccctttt 52520871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 416 - 493
Target Start/End: Original strand, 4168293 - 4168371
Alignment:
Q  416 cagtttacttttatggtaataattttcttttttggtatgtttaa-ccgtgcccacggggcaccggttagtatgaccctt 493  Q
    |||||| ||||||||||||||||| |||||| ||||||| |||| |||| |||  |||||||||||||| | |||||||    
T  4168293 cagttttcttttatggtaataattctcttttatggtatgcttaacccgtaccccgggggcaccggttagcaggaccctt 4168371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 416 - 493
Target Start/End: Original strand, 43786981 - 43787059
Alignment:
Q  416 cagtttacttttatggtaataattttcttttttggtatgtttaacc-gtgcccacggggcaccggttagtatgaccctt 493  Q
    |||||| ||||||||||||||||| | |||| ||||||| |||||| ||||||  |||||||||||||| | |||||||    
T  43786981 cagtttccttttatggtaataattctattttatggtatgcttaaccagtgccccgggggcaccggttagcaggaccctt 43787059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 365 - 402
Target Start/End: Original strand, 6842677 - 6842714
Alignment:
Q  365 ataatagttaatgcattaaaattgtgtaattaatttat 402  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  6842677 ataatagttaatgcattgaaattgtgtaattaatttat 6842714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 369 - 402
Target Start/End: Complemental strand, 10617408 - 10617375
Alignment:
Q  369 tagttaatgcattaaaattgtgtaattaatttat 402  Q
    ||||||||||||||||||||||||||||||||||    
T  10617408 tagttaatgcattaaaattgtgtaattaatttat 10617375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 369 - 402
Target Start/End: Complemental strand, 53489948 - 53489915
Alignment:
Q  369 tagttaatgcattaaaattgtgtaattaatttat 402  Q
    ||||||||||||||||||||||||||||||||||    
T  53489948 tagttaatgcattaaaattgtgtaattaatttat 53489915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 417 - 479
Target Start/End: Original strand, 2505460 - 2505523
Alignment:
Q  417 agtttacttttatggtaataattttcttttttggtatgtttaacc-gtgcccacggggcaccgg 479  Q
    ||||| |||||||||||||||||  ||||| |||||||||||||| ||||||  ||||||||||    
T  2505460 agtttccttttatggtaataattcccttttatggtatgtttaaccagtgccctgggggcaccgg 2505523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 416 - 494
Target Start/End: Complemental strand, 40362656 - 40362577
Alignment:
Q  416 cagtttacttttatggtaataattttcttttttggtatgtttaacc-gtgcccacggggcaccggttagtatgacccttt 494  Q
    |||||| ||||||||||||||||| |||||| ||||||| |||||| ||||||  |||| |||| |||| | ||||||||    
T  40362656 cagttttcttttatggtaataattctcttttatggtatgcttaaccagtgccccgggggtaccgattagcaggacccttt 40362577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 280 - 349
Target Start/End: Original strand, 4168181 - 4168251
Alignment:
Q  280 atgggaaatgcaaaccggtgcatt-ggggtattggttaagcatgttaaaaaggaaattatatagtagttaa 349  Q
    ||||||||||| ||||||||| |  |||| | |||||||| || | |||||||||||||||||||||||||    
T  4168181 atgggaaatgctaaccggtgcctccggggaactggttaaggatataaaaaaggaaattatatagtagttaa 4168251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 369 - 399
Target Start/End: Complemental strand, 40362704 - 40362674
Alignment:
Q  369 tagttaatgcattaaaattgtgtaattaatt 399  Q
    |||||||||||||||||||||||||||||||    
T  40362704 tagttaatgcattaaaattgtgtaattaatt 40362674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 423 - 461
Target Start/End: Complemental strand, 49529335 - 49529297
Alignment:
Q  423 cttttatggtaataattttcttttttggtatgtttaacc 461  Q
    |||||||||||||||||| ||||| ||||||||||||||    
T  49529335 cttttatggtaataatttccttttatggtatgtttaacc 49529297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 402
Target Start/End: Original strand, 272282 - 272315
Alignment:
Q  369 tagttaatgcattaaaattgtgtaattaatttat 402  Q
    ||||||||||||| ||||||||||||||||||||    
T  272282 tagttaatgcattgaaattgtgtaattaatttat 272315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 402
Target Start/End: Original strand, 6842605 - 6842638
Alignment:
Q  369 tagttaatgcattaaaattgtgtaattaatttat 402  Q
    ||||||||||||| ||||||||||||||||||||    
T  6842605 tagttaatgcattgaaattgtgtaattaatttat 6842638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 402
Target Start/End: Original strand, 6842637 - 6842674
Alignment:
Q  365 ataatagttaatgcattaaaattgtgtaattaatttat 402  Q
    |||||||||||| |||| ||||||||||||||||||||    
T  6842637 ataatagttaattcattgaaattgtgtaattaatttat 6842674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 423 - 483
Target Start/End: Complemental strand, 10617353 - 10617292
Alignment:
Q  423 cttttatggtaataattttcttttttggtatgtttaa-ccgtgcccacggggcaccggttag 483  Q
    |||||||||||||||||  ||||| ||||||| |||| ||||||||  ||||||||||||||    
T  10617353 cttttatggtaataattcccttttatggtatgcttaacccgtgccccgggggcaccggttag 10617292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 402
Target Start/End: Original strand, 31514853 - 31514886
Alignment:
Q  369 tagttaatgcattaaaattgtgtaattaatttat 402  Q
    ||||||||| ||||||||||||||||||||||||    
T  31514853 tagttaatgtattaaaattgtgtaattaatttat 31514886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 416 - 461
Target Start/End: Original strand, 41304113 - 41304158
Alignment:
Q  416 cagtttacttttatggtaataattttcttttttggtatgtttaacc 461  Q
    |||||| |||||||||||||||||| ||||| ||||||| ||||||    
T  41304113 cagtttccttttatggtaataatttccttttatggtatgcttaacc 41304158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 402
Target Start/End: Complemental strand, 41554064 - 41554031
Alignment:
Q  369 tagttaatgcattaaaattgtgtaattaatttat 402  Q
    ||||||||||||| ||||||||||||||||||||    
T  41554064 tagttaatgcattgaaattgtgtaattaatttat 41554031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 402
Target Start/End: Complemental strand, 42964373 - 42964340
Alignment:
Q  369 tagttaatgcattaaaattgtgtaattaatttat 402  Q
    ||||||||||||| ||||||||||||||||||||    
T  42964373 tagttaatgcattgaaattgtgtaattaatttat 42964340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 402
Target Start/End: Original strand, 43786933 - 43786966
Alignment:
Q  369 tagttaatgcattaaaattgtgtaattaatttat 402  Q
    ||||||||||||| ||||||||||||||||||||    
T  43786933 tagttaatgcattgaaattgtgtaattaatttat 43786966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 398
Target Start/End: Original strand, 49893389 - 49893422
Alignment:
Q  365 ataatagttaatgcattaaaattgtgtaattaat 398  Q
    ||||||||||||||||| ||||||||||||||||    
T  49893389 ataatagttaatgcattgaaattgtgtaattaat 49893422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 402
Target Start/End: Original strand, 52520743 - 52520776
Alignment:
Q  369 tagttaatgcattaaaattgtgtaattaatttat 402  Q
    ||||||||||||| ||||||||||||||||||||    
T  52520743 tagttaatgcattgaaattgtgtaattaatttat 52520776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 83 - 131
Target Start/End: Original strand, 33219004 - 33219052
Alignment:
Q  83 attattttatcaataatatcctcaagtatttatcgtagaaaaataaata 131  Q
    |||||||||||||||||||  | |||||||||||||||| ||| |||||    
T  33219004 attattttatcaataatatatttaagtatttatcgtagagaaagaaata 33219052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 416 - 483
Target Start/End: Original strand, 46352744 - 46352812
Alignment:
Q  416 cagtttacttttatggtaataattttcttttttggtatgtttaa-ccgtgcccacggggcaccggttag 483  Q
    |||||| |||||||||||||||||  ||||| ||||||| |||| ||||||||  | ||||||||||||    
T  46352744 cagtttccttttatggtaataattcccttttatggtatgcttaacccgtgccccggaggcaccggttag 46352812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 416 - 483
Target Start/End: Original strand, 49893441 - 49893509
Alignment:
Q  416 cagtttacttttatggtaataattttcttttttggtatgtttaa-ccgtgcccacggggcaccggttag 483  Q
    |||||| |||||||||||||||||  ||||| ||||||| |||| | ||||||  ||||||||||||||    
T  49893441 cagtttccttttatggtaataattcccttttatggtatgcttaatcagtgccccgggggcaccggttag 49893509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 44)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 365 - 453
Target Start/End: Complemental strand, 42433671 - 42433583
Alignment:
Q  365 ataatagttaatgcattaaaattgtgtaattaatttatnnnnnnnnnnnnncagtttacttttatggtaataattttcttttttggtat 453  Q
    ||||||||||||||||| ||||||||||||||||||||             |||||| |||||||||||||||||| ||||||||||||    
T  42433671 ataatagttaatgcattgaaattgtgtaattaatttataaaaagtcaaaaacagttttcttttatggtaataatttccttttttggtat 42433583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 365 - 402
Target Start/End: Original strand, 9278270 - 9278307
Alignment:
Q  365 ataatagttaatgcattaaaattgtgtaattaatttat 402  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  9278270 ataatagttaatgcattgaaattgtgtaattaatttat 9278307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 369 - 402
Target Start/End: Complemental strand, 9537948 - 9537915
Alignment:
Q  369 tagttaatgcattaaaattgtgtaattaatttat 402  Q
    ||||||||||||||||||||||||||||||||||    
T  9537948 tagttaatgcattaaaattgtgtaattaatttat 9537915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 365 - 402
Target Start/End: Complemental strand, 27988627 - 27988590
Alignment:
Q  365 ataatagttaatgcattaaaattgtgtaattaatttat 402  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  27988627 ataatagttaatgcattgaaattgtgtaattaatttat 27988590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 365 - 402
Target Start/End: Complemental strand, 28045929 - 28045892
Alignment:
Q  365 ataatagttaatgcattaaaattgtgtaattaatttat 402  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  28045929 ataatagttaatgcattgaaattgtgtaattaatttat 28045892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 303 - 348
Target Start/End: Complemental strand, 30933496 - 30933451
Alignment:
Q  303 tggggtattggttaagcatgttaaaaaggaaattatatagtagtta 348  Q
    ||||||| ||||||| ||| ||||||||||||||||||||||||||    
T  30933496 tggggtactggttaaacatattaaaaaggaaattatatagtagtta 30933451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 416 - 483
Target Start/End: Complemental strand, 16888620 - 16888552
Alignment:
Q  416 cagtttacttttatggtaataattttcttttttggtatgtttaacc-gtgcccacggggcaccggttag 483  Q
    |||||| ||||||||||||||||| |||||| ||||||| ||||||  |||||  ||||||||||||||    
T  16888620 cagtttccttttatggtaataattctcttttgtggtatgcttaaccaatgccccgggggcaccggttag 16888552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 416 - 483
Target Start/End: Original strand, 34228792 - 34228860
Alignment:
Q  416 cagtttacttttatggtaataattttcttttttggtatgtttaacc-gtgcccacggggcaccggttag 483  Q
    |||||| |||||||||||||||||  ||||| ||||||| |||||| ||||||  ||||||||||||||    
T  34228792 cagtttccttttatggtaataattcccttttatggtatgcttaaccagtgccccgggggcaccggttag 34228860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 423 - 493
Target Start/End: Original strand, 13643128 - 13643199
Alignment:
Q  423 cttttatggtaataattttcttttttggtatgtttaacc-gtgcccacggggcaccggttagtatgaccctt 493  Q
    ||||||||||||||||| |||||| ||||||| |||||| ||||||  || ||||||||||| | |||||||    
T  13643128 cttttatggtaataattctcttttatggtatgcttaaccagtgccctaggagcaccggttagcaggaccctt 13643199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 423 - 493
Target Start/End: Original strand, 13743553 - 13743624
Alignment:
Q  423 cttttatggtaataattttcttttttggtatgtttaacc-gtgcccacggggcaccggttagtatgaccctt 493  Q
    ||||||||||||||||| |||||| ||||||| |||||| ||||||  || ||||||||||| | |||||||    
T  13743553 cttttatggtaataattctcttttatggtatgcttaaccagtgccctaggagcaccggttagcaggaccctt 13743624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 423 - 493
Target Start/End: Complemental strand, 43714257 - 43714186
Alignment:
Q  423 cttttatggtaataattttcttttttggtatgtttaacc-gtgcccacggggcaccggttagtatgaccctt 493  Q
    |||||||||||| |||||  |||||| ||||| |||||| |||||| |||| |||||||||| |||||||||    
T  43714257 cttttatggtaaaaatttattttttttgtatgcttaaccagtgcccccgggacaccggttagcatgaccctt 43714186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 424 - 493
Target Start/End: Complemental strand, 2490225 - 2490155
Alignment:
Q  424 ttttatggtaataattttcttttttggtatgtttaa-ccgtgcccacggggcaccggttagtatgaccctt 493  Q
    ||||||||||| ||||| ||||||| ||||| |||| |||||||   |||||||||||||| |||||||||    
T  2490225 ttttatggtaaaaatttcctttttttgtatgcttaacccgtgcctcgggggcaccggttagcatgaccctt 2490155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 416 - 493
Target Start/End: Complemental strand, 4537820 - 4537742
Alignment:
Q  416 cagtttacttttatggtaataattttcttttttggtatgtttaacc-gtgcccacggggcaccggttagtatgaccctt 493  Q
    |||||| |||||||||||||||||  ||||| ||||||| |||||| ||||||  | |||||||||||| | |||||||    
T  4537820 cagtttccttttatggtaataattcccttttatggtatgcttaacctgtgccccagaggcaccggttagcaggaccctt 4537742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 307 - 349
Target Start/End: Original strand, 32113934 - 32113976
Alignment:
Q  307 gtattggttaagcatgttaaaaaggaaattatatagtagttaa 349  Q
    |||||||||||| || | |||||||||||||||||||||||||    
T  32113934 gtattggttaaggatatgaaaaaggaaattatatagtagttaa 32113976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 365 - 399
Target Start/End: Original strand, 37373263 - 37373297
Alignment:
Q  365 ataatagttaatgcattaaaattgtgtaattaatt 399  Q
    ||||||||||||||||| |||||||||||||||||    
T  37373263 ataatagttaatgcattgaaattgtgtaattaatt 37373297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 402
Target Start/End: Original strand, 168528 - 168561
Alignment:
Q  369 tagttaatgcattaaaattgtgtaattaatttat 402  Q
    ||||||||||||| ||||||||||||||||||||    
T  168528 tagttaatgcattgaaattgtgtaattaatttat 168561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 402
Target Start/End: Complemental strand, 7304642 - 7304609
Alignment:
Q  369 tagttaatgcattaaaattgtgtaattaatttat 402  Q
    ||||||||||||| ||||||||||||||||||||    
T  7304642 tagttaatgcattgaaattgtgtaattaatttat 7304609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 402
Target Start/End: Original strand, 10870410 - 10870447
Alignment:
Q  365 ataatagttaatgcattaaaattgtgtaattaatttat 402  Q
    |||||||||||| |||| ||||||||||||||||||||    
T  10870410 ataatagttaatacattgaaattgtgtaattaatttat 10870447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 402
Target Start/End: Original strand, 11112701 - 11112734
Alignment:
Q  369 tagttaatgcattaaaattgtgtaattaatttat 402  Q
    ||||||||||||| ||||||||||||||||||||    
T  11112701 tagttaatgcattgaaattgtgtaattaatttat 11112734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 402
Target Start/End: Original strand, 12203916 - 12203949
Alignment:
Q  369 tagttaatgcattaaaattgtgtaattaatttat 402  Q
    ||||||||||||| ||||||||||||||||||||    
T  12203916 tagttaatgcattgaaattgtgtaattaatttat 12203949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 402
Target Start/End: Original strand, 12448344 - 12448377
Alignment:
Q  369 tagttaatgcattaaaattgtgtaattaatttat 402  Q
    ||||||||||||| ||||||||||||||||||||    
T  12448344 tagttaatgcattgaaattgtgtaattaatttat 12448377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 402
Target Start/End: Complemental strand, 16888668 - 16888635
Alignment:
Q  369 tagttaatgcattaaaattgtgtaattaatttat 402  Q
    ||||||||||||| ||||||||||||||||||||    
T  16888668 tagttaatgcattgaaattgtgtaattaatttat 16888635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 416 - 492
Target Start/End: Complemental strand, 27988575 - 27988499
Alignment:
Q  416 cagtttacttttatggtaataattttcttttttggtatgtttaacc-gtgcccacggggcaccggttagtatgaccct 492  Q
    |||||| |||||||||||||||||  ||||| ||||||| |||||| ||||||  |||||||||||||| | ||||||    
T  27988575 cagtttccttttatggtaataattcccttttatggtatgcttaaccagtgccc-gggggcaccggttagcaggaccct 27988499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 416 - 492
Target Start/End: Complemental strand, 28045877 - 28045801
Alignment:
Q  416 cagtttacttttatggtaataattttcttttttggtatgtttaacc-gtgcccacggggcaccggttagtatgaccct 492  Q
    |||||| |||||||||||||||||  ||||| ||||||| |||||| ||||||  |||||||||||||| | ||||||    
T  28045877 cagtttccttttatggtaataattcccttttatggtatgcttaaccagtgccc-gggggcaccggttagcaggaccct 28045801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 349
Target Start/End: Original strand, 28626799 - 28626836
Alignment:
Q  312 ggttaagcatgttaaaaaggaaattatatagtagttaa 349  Q
    ||||||| |||| |||||||||||||||||||||||||    
T  28626799 ggttaaggatgtgaaaaaggaaattatatagtagttaa 28626836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 402
Target Start/End: Original strand, 29235297 - 29235330
Alignment:
Q  369 tagttaatgcattaaaattgtgtaattaatttat 402  Q
    |||||||||||||||| |||||||||||||||||    
T  29235297 tagttaatgcattaaatttgtgtaattaatttat 29235330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 416 - 461
Target Start/End: Complemental strand, 29444216 - 29444171
Alignment:
Q  416 cagtttacttttatggtaataattttcttttttggtatgtttaacc 461  Q
    |||||| |||||||||||||||||  ||||| ||||||||||||||    
T  29444216 cagttttcttttatggtaataattcccttttatggtatgtttaacc 29444171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 402
Target Start/End: Complemental strand, 30675696 - 30675663
Alignment:
Q  369 tagttaatgcattaaaattgtgtaattaatttat 402  Q
    ||||||||||||| ||||||||||||||||||||    
T  30675696 tagttaatgcattgaaattgtgtaattaatttat 30675663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 402
Target Start/End: Complemental strand, 33357253 - 33357220
Alignment:
Q  369 tagttaatgcattaaaattgtgtaattaatttat 402  Q
    ||||||||||||| ||||||||||||||||||||    
T  33357253 tagttaatgcattgaaattgtgtaattaatttat 33357220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 402
Target Start/End: Original strand, 34192837 - 34192870
Alignment:
Q  369 tagttaatgcattaaaattgtgtaattaatttat 402  Q
    ||||||||||||| ||||||||||||||||||||    
T  34192837 tagttaatgcattgaaattgtgtaattaatttat 34192870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 402
Target Start/End: Original strand, 36730506 - 36730539
Alignment:
Q  369 tagttaatgcattaaaattgtgtaattaatttat 402  Q
    ||||||||||||| ||||||||||||||||||||    
T  36730506 tagttaatgcattgaaattgtgtaattaatttat 36730539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 416 - 483
Target Start/End: Complemental strand, 2805336 - 2805268
Alignment:
Q  416 cagtttacttttatggtaataattttcttttttggtatgtttaacc-gtgcccacggggcaccggttag 483  Q
    |||||| |||||||||||||||||  ||||| ||||||| |||||| ||||||  | ||||||||||||    
T  2805336 cagtttccttttatggtaataattcccttttatggtatgcttaaccagtgccccggaggcaccggttag 2805268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 365 - 397
Target Start/End: Complemental strand, 2805388 - 2805356
Alignment:
Q  365 ataatagttaatgcattaaaattgtgtaattaa 397  Q
    ||||||||||||||||| |||||||||||||||    
T  2805388 ataatagttaatgcattgaaattgtgtaattaa 2805356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 416 - 491
Target Start/End: Complemental strand, 7304594 - 7304518
Alignment:
Q  416 cagtttacttttatggtaataattttcttttttggtatgtttaacc-gtgcccacggggcaccggttagtatgaccc 491  Q
    |||||| ||||||||  ||||||| |||||| ||||||| |||||| |||| |  |||||||||||||||| |||||    
T  7304594 cagtttccttttatgaaaataattctcttttatggtatgcttaaccagtgctccgggggcaccggttagtaggaccc 7304518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 416 - 483
Target Start/End: Complemental strand, 16890556 - 16890488
Alignment:
Q  416 cagtttacttttatggtaataattttcttttttggtatgtttaacc-gtgcccacggggcaccggttag 483  Q
    |||||| |||||||||||||||||   |||| ||||||| |||||| |||||  |||||||||||||||    
T  16890556 cagtttccttttatggtaataattcctttttatggtatgcttaaccggtgcctccggggcaccggttag 16890488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 416 - 483
Target Start/End: Complemental strand, 20831629 - 20831561
Alignment:
Q  416 cagtttacttttatggtaataattttcttttttggtatgtttaa-ccgtgcccacggggcaccggttag 483  Q
    |||||| ||||||||||||||||| |||||| ||||||| |||| | |||| | |||| ||||||||||    
T  20831629 cagtttccttttatggtaataattctcttttatggtatgcttaatcagtgctcccgggacaccggttag 20831561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 370 - 402
Target Start/End: Original strand, 21595909 - 21595941
Alignment:
Q  370 agttaatgcattaaaattgtgtaattaatttat 402  Q
    |||||||||||| ||||||||||||||||||||    
T  21595909 agttaatgcattgaaattgtgtaattaatttat 21595941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 370 - 402
Target Start/End: Original strand, 22451847 - 22451879
Alignment:
Q  370 agttaatgcattaaaattgtgtaattaatttat 402  Q
    |||||||||||| ||||||||||||||||||||    
T  22451847 agttaatgcattgaaattgtgtaattaatttat 22451879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 325 - 353
Target Start/End: Complemental strand, 29444282 - 29444254
Alignment:
Q  325 aaaaaggaaattatatagtagttaacgca 353  Q
    |||||||||||||||||||||||||||||    
T  29444282 aaaaaggaaattatatagtagttaacgca 29444254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #40
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 416 - 460
Target Start/End: Complemental strand, 33357205 - 33357161
Alignment:
Q  416 cagtttacttttatggtaataattttcttttttggtatgtttaac 460  Q
    |||||| ||||||||||||||||| |||||| ||||||| |||||    
T  33357205 cagtttccttttatggtaataattctcttttatggtatgcttaac 33357161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #41
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 416 - 483
Target Start/End: Original strand, 36730554 - 36730621
Alignment:
Q  416 cagtttacttttatggtaataattttcttttttggtatgtttaacc-gtgcccacggggcaccggttag 483  Q
    |||||| ||||||||||||||||| |||||| | ||||| |||||| |||||| || ||||||||||||    
T  36730554 cagtttccttttatggtaataattctcttttatagtatgcttaacctgtgccc-cgtggcaccggttag 36730621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #42
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 423 - 482
Target Start/End: Original strand, 39206303 - 39206363
Alignment:
Q  423 cttttatggtaataattttcttttttggtatgtttaaccg-tgcccacggggcaccggtta 482  Q
    |||||||| ||| ||||| ||||||| ||||| ||||||| ||||| ||||||||||||||    
T  39206303 cttttatgataaaaatttcctttttttgtatgcttaaccggtgcccccggggcaccggtta 39206363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #43
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 370 - 402
Target Start/End: Original strand, 39406905 - 39406937
Alignment:
Q  370 agttaatgcattaaaattgtgtaattaatttat 402  Q
    ||||||||| |||||||||||||||||||||||    
T  39406905 agttaatgcgttaaaattgtgtaattaatttat 39406937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #44
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 423 - 494
Target Start/End: Original strand, 40268039 - 40268111
Alignment:
Q  423 cttttatggtaataattttcttttttggtatgtttaa-ccgtgcccacggggcaccggttagtatgacccttt 494  Q
    |||||||| ||||||||| ||||||| |||||||||| ||||||||  || ||||| ||||  ||||||||||    
T  40268039 cttttatgataataatttcctttttttgtatgtttaacccgtgccccaggagcaccagttaacatgacccttt 40268111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 34)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 365 - 402
Target Start/End: Complemental strand, 3838905 - 3838868
Alignment:
Q  365 ataatagttaatgcattaaaattgtgtaattaatttat 402  Q
    ||||||||||||||||||||||||||||||||||||||    
T  3838905 ataatagttaatgcattaaaattgtgtaattaatttat 3838868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 365 - 402
Target Start/End: Complemental strand, 8473042 - 8473005
Alignment:
Q  365 ataatagttaatgcattaaaattgtgtaattaatttat 402  Q
    ||||||||||||||||||||||||||||||||||||||    
T  8473042 ataatagttaatgcattaaaattgtgtaattaatttat 8473005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 416 - 495
Target Start/End: Original strand, 47010103 - 47010183
Alignment:
Q  416 cagtttacttttatggtaataattttcttttttggtatgtttaacc-gtgcccacggggcaccggttagtatgaccctttt 495  Q
    |||||| ||||||||||||||||| |||||| ||||||| |||||| |||| |  |||||||||||||| | |||||||||    
T  47010103 cagtttccttttatggtaataattctcttttatggtatgcttaaccagtgctccaggggcaccggttagcaggaccctttt 47010183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 416 - 493
Target Start/End: Original strand, 18043272 - 18043350
Alignment:
Q  416 cagtttacttttatggtaataattttcttttttggtatgtttaacc-gtgcccacggggcaccggttagtatgaccctt 493  Q
    |||||| ||||||||||||||||| | |||| ||||||| |||||| ||||||  |||||||||||||| | |||||||    
T  18043272 cagttttcttttatggtaataattctattttatggtatgcttaaccagtgccccgggggcaccggttagcaggaccctt 18043350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 416 - 493
Target Start/End: Complemental strand, 51065824 - 51065746
Alignment:
Q  416 cagtttacttttatggtaataattttcttttttggtatgtttaacc-gtgcccacggggcaccggttagtatgaccctt 493  Q
    |||||| |||||||||||||||||  ||||| ||||||| |||||| ||||||  |||||||||||||| | |||||||    
T  51065824 cagtttccttttatggtaataattcccttttatggtatgcttaaccagtgccccaggggcaccggttagcaggaccctt 51065746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 369 - 402
Target Start/End: Complemental strand, 14350401 - 14350368
Alignment:
Q  369 tagttaatgcattaaaattgtgtaattaatttat 402  Q
    ||||||||||||||||||||||||||||||||||    
T  14350401 tagttaatgcattaaaattgtgtaattaatttat 14350368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 416 - 492
Target Start/End: Complemental strand, 45449320 - 45449243
Alignment:
Q  416 cagtttacttttatggtaataattttcttttttggtatgtttaacc-gtgcccacggggcaccggttagtatgaccct 492  Q
    |||||| |||||||||||||||||  ||||| |||||||||||||| ||||||  |||||| ||||||| | ||||||    
T  45449320 cagtttccttttatggtaataattgccttttatggtatgtttaaccagtgccccaggggcatcggttagcaggaccct 45449243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 365 - 402
Target Start/End: Original strand, 48071540 - 48071577
Alignment:
Q  365 ataatagttaatgcattaaaattgtgtaattaatttat 402  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  48071540 ataatagttaatgcattgaaattgtgtaattaatttat 48071577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 416 - 483
Target Start/End: Complemental strand, 24178539 - 24178471
Alignment:
Q  416 cagtttacttttatggtaataattttcttttttggtatgtttaacc-gtgcccacggggcaccggttag 483  Q
    |||||| ||||||||||||||||||  |||| ||||||| |||||| ||||||  ||||||||||||||    
T  24178539 cagtttccttttatggtaataatttcattttatggtatgcttaaccagtgccccgggggcaccggttag 24178471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 313 - 349
Target Start/End: Complemental strand, 37315421 - 37315385
Alignment:
Q  313 gttaagcatgttaaaaaggaaattatatagtagttaa 349  Q
    |||||||||| ||||||||||||||||||||||||||    
T  37315421 gttaagcatgctaaaaaggaaattatatagtagttaa 37315385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 416 - 483
Target Start/End: Original strand, 38162960 - 38163028
Alignment:
Q  416 cagtttacttttatggtaataattttcttttttggtatgtttaa-ccgtgcccacggggcaccggttag 483  Q
    |||||| |||||||||||||||||  ||||| ||||||| |||| ||||||||  ||||||||||||||    
T  38162960 cagtttccttttatggtaataattcccttttatggtatgcttaacccgtgccccgggggcaccggttag 38163028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 416 - 483
Target Start/End: Complemental strand, 42770066 - 42769998
Alignment:
Q  416 cagtttacttttatggtaataattttcttttttggtatgtttaacc-gtgcccacggggcaccggttag 483  Q
    |||||| ||||||||||||||||| | |||| ||||||| |||||| ||||||  ||||||||||||||    
T  42770066 cagtttccttttatggtaataattctattttatggtatgcttaaccagtgccccgggggcaccggttag 42769998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 489
Target Start/End: Original strand, 52431643 - 52431765
Alignment:
Q  369 tagttaatgcattaaaattgtgtaattaatttatnnnnnnnnnnnnncagtttacttttatggtaataattttc-ttttttggtatgtttaacc-gtgcc 466  Q
    ||||||||||||| ||||||||||||||||||||             || ||| |||||||||||||||||| | |||||||||||| |||||| |||||    
T  52431643 tagttaatgcattgaaattgtgtaattaatttataaaatgtcaaaagcaattttcttttatggtaataatttcctttttttggtatgcttaaccagtgcc 52431742  T
Q  467 cacggggcaccggttagtatgac 489  Q
    |  ||| |||||||||| |||||    
T  52431743 ccagggacaccggttagcatgac 52431765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 416 - 493
Target Start/End: Original strand, 5694431 - 5694509
Alignment:
Q  416 cagtttacttttatggtaataattttcttttttggtatgtttaacc-gtgcccacggggcaccggttagtatgaccctt 493  Q
    |||||| |||||||||||||||||  ||||| ||||||| |||||| |||| |  |||||||||||||| | |||||||    
T  5694431 cagtttccttttatggtaataattcccttttatggtatgcttaaccagtgctccgggggcaccggttagcaggaccctt 5694509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 416 - 493
Target Start/End: Original strand, 15227849 - 15227927
Alignment:
Q  416 cagtttacttttatggtaataattttcttttttggtatgtttaacc-gtgcccacggggcaccggttagtatgaccctt 493  Q
    |||||| |||||||||||||||||  ||||| ||||||| |||||| ||||||  | |||||||||||| | |||||||    
T  15227849 cagtttccttttatggtaataattcccttttatggtatgcttaaccagtgccccggaggcaccggttagcaagaccctt 15227927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 312 - 402
Target Start/End: Complemental strand, 19011151 - 19011058
Alignment:
Q  312 ggttaagcatgttaaaaaggaaattatatagtagttaacgcannnnnnn---agggataatagttaatgcattaaaattgtgtaattaatttat 402  Q
    ||||||| || | ||||||||||||||||||||||||| |||          ||| ||| ||||||||||||| ||||||||||||||||||||    
T  19011151 ggttaaggatatgaaaaaggaaattatatagtagttaatgcattttttttgaaggaatagtagttaatgcattgaaattgtgtaattaatttat 19011058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 416 - 493
Target Start/End: Original strand, 29657881 - 29657959
Alignment:
Q  416 cagtttacttttatggtaataattttcttttttggtatgtttaacc-gtgcccacggggcaccggttagtatgaccctt 493  Q
    |||||| ||||| |||||||||||  ||||| ||||||| |||||| ||||||  |||||||||||||| | |||||||    
T  29657881 cagtttccttttttggtaataattcccttttatggtatgcttaaccagtgccctgggggcaccggttagcaggaccctt 29657959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 416 - 461
Target Start/End: Original strand, 3097769 - 3097814
Alignment:
Q  416 cagtttacttttatggtaataattttcttttttggtatgtttaacc 461  Q
    |||||| |||||||||||||||||| ||||| ||||||| ||||||    
T  3097769 cagttttcttttatggtaataatttccttttatggtatgcttaacc 3097814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 423 - 483
Target Start/End: Complemental strand, 3784782 - 3784721
Alignment:
Q  423 cttttatggtaataattttcttttttggtatgtttaa-ccgtgcccacggggcaccggttag 483  Q
    |||||||||||||||||| ||||| ||||||| |||| ||||| ||  ||||||||||||||    
T  3784782 cttttatggtaataatttccttttatggtatgcttaacccgtgtcccgggggcaccggttag 3784721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 424 - 461
Target Start/End: Original strand, 13961329 - 13961366
Alignment:
Q  424 ttttatggtaataattttcttttttggtatgtttaacc 461  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  13961329 ttttatggtaataattttcttttatggtatgcttaacc 13961366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 349
Target Start/End: Complemental strand, 17333469 - 17333400
Alignment:
Q  280 atgggaaatgcaaaccggtgcattggggtattggttaagcatgttaaaaaggaaattatatagtagttaa 349  Q
    ||||||||||| |||||||||    ||| | |||||||| || | |||||||||||||||||||||||||    
T  17333469 atgggaaatgctaaccggtgcccccgggcactggttaaggatatgaaaaaggaaattatatagtagttaa 17333400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 402
Target Start/End: Original strand, 18043224 - 18043257
Alignment:
Q  369 tagttaatgcattaaaattgtgtaattaatttat 402  Q
    ||||||||||||| ||||||||||||||||||||    
T  18043224 tagttaatgcattgaaattgtgtaattaatttat 18043257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 398
Target Start/End: Complemental strand, 24178591 - 24178558
Alignment:
Q  365 ataatagttaatgcattaaaattgtgtaattaat 398  Q
    ||||||||||||||||| ||||||||||||||||    
T  24178591 ataatagttaatgcattgaaattgtgtaattaat 24178558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 373 - 402
Target Start/End: Original strand, 28481906 - 28481935
Alignment:
Q  373 taatgcattaaaattgtgtaattaatttat 402  Q
    ||||||||||||||||||||||||||||||    
T  28481906 taatgcattaaaattgtgtaattaatttat 28481935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 402
Target Start/End: Original strand, 29210475 - 29210508
Alignment:
Q  369 tagttaatgcattaaaattgtgtaattaatttat 402  Q
    ||||||||||||| ||||||||||||||||||||    
T  29210475 tagttaatgcattgaaattgtgtaattaatttat 29210508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 402
Target Start/End: Complemental strand, 30294505 - 30294472
Alignment:
Q  369 tagttaatgcattaaaattgtgtaattaatttat 402  Q
    ||||||||||||| ||||||||||||||||||||    
T  30294505 tagttaatgcattgaaattgtgtaattaatttat 30294472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 402
Target Start/End: Complemental strand, 35985745 - 35985712
Alignment:
Q  369 tagttaatgcattaaaattgtgtaattaatttat 402  Q
    ||||||||||||| ||||||||||||||||||||    
T  35985745 tagttaatgcattgaaattgtgtaattaatttat 35985712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 402
Target Start/End: Complemental strand, 36446449 - 36446416
Alignment:
Q  369 tagttaatgcattaaaattgtgtaattaatttat 402  Q
    ||||||||||||| ||||||||||||||||||||    
T  36446449 tagttaatgcattgaaattgtgtaattaatttat 36446416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 402
Target Start/End: Original strand, 38162912 - 38162945
Alignment:
Q  369 tagttaatgcattaaaattgtgtaattaatttat 402  Q
    ||||||||||||| ||||||||||||||||||||    
T  38162912 tagttaatgcattgaaattgtgtaattaatttat 38162945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 423 - 491
Target Start/End: Complemental strand, 38595821 - 38595752
Alignment:
Q  423 cttttatggtaataattttcttttttggtatgtttaacc-gtgcccacggggcaccggttagtatgaccc 491  Q
    |||||||||||| ||||||||||||| | ||| |||||| ||||||  | |||||||||||| |||||||    
T  38595821 cttttatggtaagaattttctttttttgcatgcttaaccagtgccccggaggcaccggttagcatgaccc 38595752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 402
Target Start/End: Complemental strand, 42770114 - 42770081
Alignment:
Q  369 tagttaatgcattaaaattgtgtaattaatttat 402  Q
    ||||||||||||| ||||||||||||||||||||    
T  42770114 tagttaatgcattgaaattgtgtaattaatttat 42770081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 402
Target Start/End: Complemental strand, 50128296 - 50128263
Alignment:
Q  369 tagttaatgcattaaaattgtgtaattaatttat 402  Q
    ||||||||||||| ||||||||||||||||||||    
T  50128296 tagttaatgcattgaaattgtgtaattaatttat 50128263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 416 - 483
Target Start/End: Complemental strand, 12072138 - 12072070
Alignment:
Q  416 cagtttacttttatggtaataattttcttttttggtatgtttaacc-gtgcccacggggcaccggttag 483  Q
    |||||| |||||||||||||||||   |||| ||||||| |||||| ||||||  ||||||||||||||    
T  12072138 cagttttcttttatggtaataattcctttttatggtatgcttaaccagtgccccgggggcaccggttag 12072070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 309 - 349
Target Start/End: Complemental strand, 30294539 - 30294499
Alignment:
Q  309 attggttaagcatgttaaaaaggaaattatatagtagttaa 349  Q
    |||||||||| || | |||||||||||||||||||||||||    
T  30294539 attggttaaggatatgaaaaaggaaattatatagtagttaa 30294499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 416 - 455
Target Start/End: Original strand, 10820592 - 10820631
Alignment:
Q  416 cagtttacttttatggtaataattttcttttttggtatgt 455  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  10820592 cagtttccttttatggtaataattttcttttttggtatgt 10820631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 365 - 493
Target Start/End: Complemental strand, 27856524 - 27856394
Alignment:
Q  365 ataatagttaatgcattaaaattgtgtaattaatttatnnnnnnnnnnnnn-cagtttacttttatggtaataattttcttttttggtatgtttaacc-g 462  Q
    ||||||||||||||||| ||||||||||||||||||||              |||||| |||||||||||||||||| ||||| ||||||| |||||| |    
T  27856524 ataatagttaatgcattgaaattgtgtaattaatttataataatgtcaaaaacagtttccttttatggtaataatttccttttatggtatgcttaaccag 27856425  T
Q  463 tgcccacggggcaccggttagtatgaccctt 493  Q
    |||||  |||||| ||||||| | |||||||    
T  27856424 tgccccgggggcatcggttagcaggaccctt 27856394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 416 - 493
Target Start/End: Complemental strand, 3668189 - 3668111
Alignment:
Q  416 cagtttacttttatggtaataattttcttttttggtatgtttaacc-gtgcccacggggcaccggttagtatgaccctt 493  Q
    |||||| |||||||||||||||||| ||||| | |||||||||||| ||||||   ||||||||||||| | |||||||    
T  3668189 cagtttccttttatggtaataatttccttttatagtatgtttaaccagtgccccgagggcaccggttagcaagaccctt 3668111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 416 - 493
Target Start/End: Original strand, 20553041 - 20553119
Alignment:
Q  416 cagtttacttttatggtaataattttcttttttggtatgtttaacc-gtgcccacggggcaccggttagtatgaccctt 493  Q
    |||||| |||||||||||||||||  ||||| ||||||| |||||| ||||||  |||||||||||||| | |||||||    
T  20553041 cagtttccttttatggtaataattcccttttatggtatgcttaaccagtgccccgggggcaccggttagcaggaccctt 20553119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 369 - 402
Target Start/End: Complemental strand, 5093663 - 5093630
Alignment:
Q  369 tagttaatgcattaaaattgtgtaattaatttat 402  Q
    ||||||||||||||||||||||||||||||||||    
T  5093663 tagttaatgcattaaaattgtgtaattaatttat 5093630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 308 - 349
Target Start/End: Complemental strand, 15079117 - 15079076
Alignment:
Q  308 tattggttaagcatgttaaaaaggaaattatatagtagttaa 349  Q
    ||||| ||||||||| ||||||||||||||||||||||||||    
T  15079117 tattgattaagcatgctaaaaaggaaattatatagtagttaa 15079076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 416 - 491
Target Start/End: Original strand, 22887860 - 22887936
Alignment:
Q  416 cagtttacttttatggtaataattttcttttttggtatgtttaacc-gtgcccacggggcaccggttagtatgaccc 491  Q
    |||||| ||||||||||||||||| |||||| ||||||| |||||| |||| |  ||||||||| |||| |||||||    
T  22887860 cagtttccttttatggtaataattctcttttatggtatgcttaaccagtgctccgggggcaccgattagcatgaccc 22887936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 416 - 483
Target Start/End: Original strand, 30486320 - 30486388
Alignment:
Q  416 cagtttacttttatggtaataattttcttttttggtatgtttaacc-gtgcccacggggcaccggttag 483  Q
    |||||| |||||||||||||||||  ||||| ||||||| |||||| ||||||  ||||||||||||||    
T  30486320 cagtttccttttatggtaataattcccttttatggtatgcttaaccagtgccccgggggcaccggttag 30486388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 423 - 493
Target Start/End: Original strand, 22567719 - 22567790
Alignment:
Q  423 cttttatggtaataattttcttttttggtatgtttaa-ccgtgcccacggggcaccggttagtatgaccctt 493  Q
    ||||||||||||||||| |||||| ||||||| |||| |||||| |  |||||||||||||| | |||||||    
T  22567719 cttttatggtaataattctcttttatggtatgcttaacccgtgctccaggggcaccggttagcaggaccctt 22567790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 416 - 489
Target Start/End: Original strand, 1859272 - 1859346
Alignment:
Q  416 cagtttacttttatggtaataattttcttttttggtatgtttaacc-gtgcccacggggcaccggttagtatgac 489  Q
    |||||| ||||||||||||||||| |||||| ||||||| |||||| ||||||  ||  |||||||||| |||||    
T  1859272 cagttttcttttatggtaataattctcttttatggtatgcttaaccagtgccctaggaacaccggttagcatgac 1859346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 423 - 461
Target Start/End: Original strand, 15146748 - 15146786
Alignment:
Q  423 cttttatggtaataattttcttttttggtatgtttaacc 461  Q
    |||||||| ||||||||||| ||||||||||||||||||    
T  15146748 cttttatgataataattttcctttttggtatgtttaacc 15146786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 402
Target Start/End: Complemental strand, 561642 - 561609
Alignment:
Q  369 tagttaatgcattaaaattgtgtaattaatttat 402  Q
    ||||||||||||| ||||||||||||||||||||    
T  561642 tagttaatgcattgaaattgtgtaattaatttat 561609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 402
Target Start/End: Original strand, 2898133 - 2898166
Alignment:
Q  369 tagttaatgcattaaaattgtgtaattaatttat 402  Q
    ||||||||||||| ||||||||||||||||||||    
T  2898133 tagttaatgcattgaaattgtgtaattaatttat 2898166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 402
Target Start/End: Complemental strand, 3668237 - 3668204
Alignment:
Q  369 tagttaatgcattaaaattgtgtaattaatttat 402  Q
    ||||||||||||| ||||||||||||||||||||    
T  3668237 tagttaatgcattgaaattgtgtaattaatttat 3668204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 402
Target Start/End: Original strand, 4381857 - 4381890
Alignment:
Q  369 tagttaatgcattaaaattgtgtaattaatttat 402  Q
    ||||||||||||| ||||||||||||||||||||    
T  4381857 tagttaatgcattgaaattgtgtaattaatttat 4381890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 423 - 495
Target Start/End: Complemental strand, 5093608 - 5093536
Alignment:
Q  423 cttttatggtaataattttcttttttggtatgtttaac-cgtgcccacggggcaccggttagtatgaccctttt 495  Q
    |||||||| ||||||||| ||||| |||||||||||||  |||||| ||||||||||||||  | |||||||||    
T  5093608 cttttatgataataatttccttttatggtatgtttaactagtgccc-cggggcaccggttaacaggaccctttt 5093536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 416 - 492
Target Start/End: Complemental strand, 22068396 - 22068319
Alignment:
Q  416 cagtttacttttatggtaataattttcttttttggtatgtttaacc-gtgcccacggggcaccggttagtatgaccct 492  Q
    |||||| |||||||||||||||||  ||||| ||||||| |||||| ||||||  ||||||||| |||| | ||||||    
T  22068396 cagtttccttttatggtaataattcccttttatggtatgcttaaccagtgccccgggggcaccgattagcaggaccct 22068319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 402
Target Start/End: Complemental strand, 26387188 - 26387155
Alignment:
Q  369 tagttaatgcattaaaattgtgtaattaatttat 402  Q
    ||||||||||||| ||||||||||||||||||||    
T  26387188 tagttaatgcattgaaattgtgtaattaatttat 26387155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 402
Target Start/End: Complemental strand, 26891787 - 26891754
Alignment:
Q  369 tagttaatgcattaaaattgtgtaattaatttat 402  Q
    ||||||||||||| ||||||||||||||||||||    
T  26891787 tagttaatgcattgaaattgtgtaattaatttat 26891754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 402
Target Start/End: Original strand, 31438708 - 31438741
Alignment:
Q  369 tagttaatgcattaaaattgtgtaattaatttat 402  Q
    ||||||||||||| ||||||||||||||||||||    
T  31438708 tagttaatgcattgaaattgtgtaattaatttat 31438741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 402
Target Start/End: Complemental strand, 34442656 - 34442623
Alignment:
Q  369 tagttaatgcattaaaattgtgtaattaatttat 402  Q
    ||||||||||||| ||||||||||||||||||||    
T  34442656 tagttaatgcattgaaattgtgtaattaatttat 34442623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 402
Target Start/End: Original strand, 39531886 - 39531919
Alignment:
Q  369 tagttaatgcattaaaattgtgtaattaatttat 402  Q
    ||||||||||||| ||||||||||||||||||||    
T  39531886 tagttaatgcattgaaattgtgtaattaatttat 39531919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 402
Target Start/End: Original strand, 43637226 - 43637259
Alignment:
Q  369 tagttaatgcattaaaattgtgtaattaatttat 402  Q
    ||||||||||||| ||||||||||||||||||||    
T  43637226 tagttaatgcattgaaattgtgtaattaatttat 43637259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 416 - 483
Target Start/End: Complemental strand, 4022555 - 4022487
Alignment:
Q  416 cagtttacttttatggtaataattttcttttttggtatgtttaacc-gtgcccacggggcaccggttag 483  Q
    |||||| |||||||| ||||||||| ||||| || ||||||||||| ||| ||  ||||||||||||||    
T  4022555 cagtttccttttatgataataatttccttttatgatatgtttaaccagtgtcccgggggcaccggttag 4022487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 416 - 483
Target Start/End: Complemental strand, 8969483 - 8969415
Alignment:
Q  416 cagtttacttttatggtaataattttcttttttggtatgtttaac-cgtgcccacggggcaccggttag 483  Q
    |||||| |||||||||||||||||| ||||| | ||||| |||||  ||||||  ||||||||||||||    
T  8969483 cagtttccttttatggtaataatttccttttatagtatgcttaactagtgcccctggggcaccggttag 8969415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 424 - 491
Target Start/End: Complemental strand, 31782633 - 31782565
Alignment:
Q  424 ttttatggtaataattttcttttttggtatgtttaa-ccgtgcccacggggcaccggttagtatgaccc 491  Q
    ||||||||||| ||||| ||||||| ||||| |||| |||||||   |||||||||||||| |||||||    
T  31782633 ttttatggtaaaaatttcctttttttgtatgcttaacccgtgcctcgggggcaccggttagcatgaccc 31782565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 416 - 483
Target Start/End: Complemental strand, 32360945 - 32360877
Alignment:
Q  416 cagtttacttttatggtaataattttcttttttggtatgtttaacc-gtgcccacggggcaccggttag 483  Q
    |||||| |||||||||||||||||  ||||| ||||||| ||||||  |||||  ||||||||||||||    
T  32360945 cagtttccttttatggtaataattcccttttatggtatgcttaaccaatgccccgggggcaccggttag 32360877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 416 - 493
Target Start/End: Complemental strand, 6186 - 6108
Alignment:
Q  416 cagtttacttttatggtaataattttcttttttggtatgtttaa-ccgtgcccacggggcaccggttagtatgaccctt 493  Q
    |||||| ||||||||||||||||   ||||| |||||||||||| ||||||||  |||||||||||||| | |||||||    
T  6186 cagtttccttttatggtaataatccccttttatggtatgtttaacccgtgccccgggggcaccggttagcaggaccctt 6108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 417 - 493
Target Start/End: Complemental strand, 53760 - 53683
Alignment:
Q  417 agtttacttttatggtaataattttcttttttggtatgtttaa-ccgtgcccacggggcaccggttagtatgaccctt 493  Q
    ||||| |||||||||||||||||  ||||| |||||||||||| |||| |||  |||||||||||||| | |||||||    
T  53760 agtttccttttatggtaataattcccttttatggtatgtttaacccgttccccgggggcaccggttagcaagaccctt 53683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 369 - 402
Target Start/End: Complemental strand, 53809 - 53776
Alignment:
Q  369 tagttaatgcattaaaattgtgtaattaatttat 402  Q
    ||||||||||||||||||||||||||||||||||    
T  53809 tagttaatgcattaaaattgtgtaattaatttat 53776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 416 - 462
Target Start/End: Complemental strand, 95661 - 95615
Alignment:
Q  416 cagtttacttttatggtaataattttcttttttggtatgtttaaccg 462  Q
    |||||| |||||||||||||||||  ||||| |||||||||||||||    
T  95661 cagttttcttttatggtaataattcccttttatggtatgtttaaccg 95615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1266 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold1266
Description:

Target: scaffold1266; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 402
Target Start/End: Original strand, 350 - 387
Alignment:
Q  365 ataatagttaatgcattaaaattgtgtaattaatttat 402  Q
    ||||||||||||||||| |||||||||||| |||||||    
T  350 ataatagttaatgcattgaaattgtgtaataaatttat 387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0524 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0524
Description:

Target: scaffold0524; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 402
Target Start/End: Original strand, 887 - 920
Alignment:
Q  369 tagttaatgcattaaaattgtgtaattaatttat 402  Q
    ||||||||||||| ||||||||||||||||||||    
T  887 tagttaatgcattgaaattgtgtaattaatttat 920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 402
Target Start/End: Original strand, 10772 - 10805
Alignment:
Q  369 tagttaatgcattaaaattgtgtaattaatttat 402  Q
    ||||||||||||| ||||||||||||||||||||    
T  10772 tagttaatgcattgaaattgtgtaattaatttat 10805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0264 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 416 - 461
Target Start/End: Original strand, 23071 - 23116
Alignment:
Q  416 cagtttacttttatggtaataattttcttttttggtatgtttaacc 461  Q
    |||||| |||||||| |||||||| |||||| ||||||||||||||    
T  23071 cagtttccttttatgttaataattctcttttatggtatgtttaacc 23116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0113 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 402
Target Start/End: Original strand, 40977 - 41014
Alignment:
Q  365 ataatagttaatgcattaaaattgtgtaattaatttat 402  Q
    ||||||||||||||||| ||||| ||||||||||||||    
T  40977 ataatagttaatgcattgaaattatgtaattaatttat 41014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 402
Target Start/End: Complemental strand, 33809 - 33772
Alignment:
Q  365 ataatagttaatgcattaaaattgtgtaattaatttat 402  Q
    |||||||||||| |||| ||||||||||||||||||||    
T  33809 ataatagttaatacattgaaattgtgtaattaatttat 33772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University