View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11558_low_7 (Length: 483)
Name: NF11558_low_7
Description: NF11558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11558_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 18 - 331
Target Start/End: Original strand, 5523126 - 5523438
Alignment:
| Q |
18 |
aatgctagctacatgtgatgatccagaagaaccaaaataagatcaagaattataagcaaacgggtgccttaatgcttaatcagattatgagaaagctcta |
117 |
Q |
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| T |
5523126 |
aatgctagctacatgtgatgatccagaggaaccaaaataagatcaagaattataagcaaacgggtgccttaatgcttaatcagattatgagaaagcttta |
5523225 |
T |
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| Q |
118 |
tatgtaaataagctaaattgttgcctactttatgaacaactttaaaatgattttgaaaatctcataaatgatgagtgattcttaaccaacaagtgtttat |
217 |
Q |
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| T |
5523226 |
gatgtaaataagctaaattgt-gcctactttatgaacaacttgaaaatgattttgaaaatctcataaatgatgagtgattcttaaccaacaagtgtttat |
5523324 |
T |
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| Q |
218 |
ctttgcaaaaggagaatgatgatttaaataaagaaatagaaagacttcattcttttcatgacatttccaagaaatttgttcaatgtttgcaagattcctt |
317 |
Q |
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| T |
5523325 |
ctttgcaaaaggagaatgatgatttaaataaagaaatagaaagacttccttcttttcatgacatttccaagaaatttgttcaatgtttgcaagattcctt |
5523424 |
T |
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| Q |
318 |
gttcaacctaactg |
331 |
Q |
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| T |
5523425 |
gctcaacctaactg |
5523438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 384 - 483
Target Start/End: Original strand, 5523491 - 5523590
Alignment:
| Q |
384 |
ctctcattaccaaagagataatactatttnnnnnnntgaagttaataatataaaaattgaccttaaaagttttgttgagtcaacaatcacgtttcaaaat |
483 |
Q |
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| T |
5523491 |
ctctcattaccaaagagataatactatttaaaaaaatgaagttaataatctaaaaattgaccttaaaagttttgttgagtcaacaatcacttttcaaaat |
5523590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 121 - 179
Target Start/End: Complemental strand, 45307736 - 45307678
Alignment:
| Q |
121 |
gtaaataagctaaattgttgcctactttatgaacaactttaaaatgattttgaaaatct |
179 |
Q |
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|||| ||| |||| || ||||||| |||||| ||||||| ||||||||||||||||||| |
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| T |
45307736 |
gtaactaatctaagttattgcctattttatggacaacttaaaaatgattttgaaaatct |
45307678 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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