View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11558_low_9 (Length: 479)
Name: NF11558_low_9
Description: NF11558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11558_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 116 - 462
Target Start/End: Complemental strand, 53559079 - 53558733
Alignment:
| Q |
116 |
atttccactttagcgaacacataaagatgccacattattaaatttagtcacctcagtgnnnnnnnnatgaatcttactcaaaatgtgtatgaggactaat |
215 |
Q |
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| T |
53559079 |
atttccactttagcgaacacataaagatgccacattatcaaaattagtcacctcggtgttttttttatgaatgttactcaaaatgtgtattaggactaat |
53558980 |
T |
|
| Q |
216 |
aaatgtaaaagagattaaataaatcgcttattttaaatttgtggaaacaaaattgcacaattacgaaacttggggttcaagagtcgagagtgtaatttaa |
315 |
Q |
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| T |
53558979 |
aaatgtaaaagaggttaaataaatcgcttattttaaatttgtggaaacaaaattgcacaattacgaaacttgaggttcaagagtcgagagtgtaatttaa |
53558880 |
T |
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| Q |
316 |
gacttatgtttttcctaatttttatttgaacattgatctttgagtttcaatatggttttatctttgagtgatattatgaaagattttttaatactttcat |
415 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |
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| T |
53558879 |
gacttgtgtttttcctaatttttatttgaacattgatctttgagtttcaatatggttttatctttgagtggtattttgaaagattttttaatactttcat |
53558780 |
T |
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| Q |
416 |
tgcaaatttcaaaaagttcatgcatattcttttttgtcaacgataac |
462 |
Q |
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| T |
53558779 |
tgcaaatttcaaaaagttcatgcatgttcttttttgtcaacgataac |
53558733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 2 - 81
Target Start/End: Complemental strand, 53559191 - 53559112
Alignment:
| Q |
2 |
tgtaagagtgaaaaagaatggaggtttgatgcagaggttgagtgaggatttgggtggagtggtcatgtgatttcctcttc |
81 |
Q |
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| T |
53559191 |
tgtaagagtgaaaaagaatggaggtttgatgtagaggttgagtgaggatttgggtggagtggtcatgtgatttcctcttc |
53559112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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