View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11559_high_11 (Length: 238)

Name: NF11559_high_11
Description: NF11559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11559_high_11
NF11559_high_11
[»] chr1 (4 HSPs)
chr1 (16-238)||(33159690-33159912)
chr1 (16-236)||(33182534-33182753)
chr1 (16-109)||(33141070-33141163)
chr1 (21-104)||(33286948-33287031)


Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 16 - 238
Target Start/End: Original strand, 33159690 - 33159912
Alignment:
Q  16 ctaatgttgatggaaaaatcccagactttattgagtgtccagattgtcaccgcacaatgcaagtgtatatcagctacaggtgctgccataatggttagca 115  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||    
T  33159690 ctaatgttgatggaaaaatcccagactttattaagtgtccagattgtcaccgcacaatggaagtgtatatcagctacaagtgctgccataatggttagca 33159789  T
Q  116 ttaggtagcttcatgggtttgagcattggcgagctatgtactttgttcgattattgcattttctcttatggtttctttgtggtcagttgtttgagtgtga 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33159790 ttaggtagcttcatgggtttgagcattggcgagctatgtactttgttcgattattgcattttctcttatggtttctttgtggtcagttgtttgagtgtga 33159889  T
Q  216 gattactatcagttttatgtaac 238  Q
    |||||||||||||||||||||||    
T  33159890 gattactatcagttttatgtaac 33159912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 16 - 236
Target Start/End: Original strand, 33182534 - 33182753
Alignment:
Q  16 ctaatgttgatggaaaaatcccagactttattgagtgtccagattgtcaccgcacaatgcaagtgtatatcagctacaggtgctgccataatggttagca 115  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||    
T  33182534 ctaatgttgatggaaaaatcccagactttattaagtgtccagattgtcaccgcacaatggaagtgtatatcagctacaagtgctgccataatggttagca 33182633  T
Q  116 ttaggtagcttcatgggtttgagcattggcgagctatgtactttgttcgattattgcattttctcttatggtttctttgtggtcagttgtttgagtgtga 215  Q
    |||||||||||||||||||| ||||||||| || |||||||| |||| |||||||||||||| |||| |   || | |||||||||||||||||||||||    
T  33182634 ttaggtagcttcatgggttttagcattggcaagttatgtactatgtttgattattgcatttt-tcttctaagttttctgtggtcagttgtttgagtgtga 33182732  T
Q  216 gattactatcagttttatgta 236  Q
    ||| |||||||||||||||||    
T  33182733 gatcactatcagttttatgta 33182753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 109
Target Start/End: Original strand, 33141070 - 33141163
Alignment:
Q  16 ctaatgttgatggaaaaatcccagactttattgagtgtccagattgtcaccgcacaatgcaagtgtatatcagctacaggtgctgccataatgg 109  Q
    ||||||||| ||| ||||| ||||| ||||| ||||||||||||||||||||||||||| |||||| ||| ||||||| ||| |||||||||||    
T  33141070 ctaatgttgctgggaaaattccagattttatcgagtgtccagattgtcaccgcacaatggaagtgtttattagctacaagtgttgccataatgg 33141163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 104
Target Start/End: Complemental strand, 33287031 - 33286948
Alignment:
Q  21 gttgatggaaaaatcccagactttattgagtgtccagattgtcaccgcacaatgcaagtgtatatcagctacaggtgctgccat 104  Q
    |||| ||||||||||||||| ||| ||||||||||||||||||  |||| |||| |||||| ||| | ||||| ||| ||||||    
T  33287031 gttgctggaaaaatcccagattttgttgagtgtccagattgtcgtcgcagaatggaagtgtttattacctacaagtgttgccat 33286948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University