View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11559_high_4 (Length: 384)
Name: NF11559_high_4
Description: NF11559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11559_high_4 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 1 - 384
Target Start/End: Complemental strand, 40803350 - 40802967
Alignment:
| Q |
1 |
attgatgaatggtgtaaagggggaacatgacatggaaaatacggggaaaatgttgacattaatgcttttttgtgcttgctgcaagttttctaaccggtga |
100 |
Q |
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| T |
40803350 |
attgatgaatggtgtaaagggggaacatgacatggaaaatacggggaaaatgttgacattaatgcttttttgtgcttgctgcaagttttctaaccggtga |
40803251 |
T |
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| Q |
101 |
cttcttcaacttttgatgcagtgacttcaaacagcgattgtctgaacaccatgatgaagtgcatagcggtaagattttggttatattctttgagctaaat |
200 |
Q |
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| T |
40803250 |
cttcttcaacttttgatgcagtgacttcaaacagcgattgtctgaacaccatgatgaagtgcatagcggtaagattttggttatattctttgagctaaat |
40803151 |
T |
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| Q |
201 |
ccaatttccgtatatcgttatttcatgctttggattcttcccgattgaccatatccttctaaaattagtgtgctaatcaaactagttttatttggttttt |
300 |
Q |
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| T |
40803150 |
ccaatttccgtatatcgttatttcatgctttggattcttcccgattaaccatatccttctaaaattagtgtgctaatcaaactagttttatttggttttt |
40803051 |
T |
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| Q |
301 |
cagttctacttacttaaataggatctttaacttaatagacagagtattttcaatccattttaattgttgatgtgcgcacccctc |
384 |
Q |
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| T |
40803050 |
cagttctacttacttaaataggatctttaacttaatagacagagtattttcaatccattttaattgttgatgtgcgcacccctc |
40802967 |
T |
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Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 145 - 184
Target Start/End: Original strand, 4642492 - 4642531
Alignment:
| Q |
145 |
aacaccatgatgaagtgcatagcggtaagattttggttat |
184 |
Q |
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| T |
4642492 |
aacacaatgatgaagtgcatcgcggtaagattttggttat |
4642531 |
T |
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