View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11559_high_9 (Length: 254)
Name: NF11559_high_9
Description: NF11559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11559_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 52081977 - 52081737
Alignment:
| Q |
1 |
gtaaaaggtacattttgtcggtttcttttgcattttctttgagctcaaccttttgtaatcatcaacctcaatatagtttccattttgtctgaatgaattt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
52081977 |
gtaaaaggtacattttgtcggtttcttttgcattttctttgagctcaaccttttgtaatcatcaacctcaatatagttcccattttgtctgaatgaattt |
52081878 |
T |
|
| Q |
101 |
tttgcaacaaaaattataagacatttgcataattaaaaaggcacagctttattgattcgtttaatgcaccaaaagctttaagaccggctcttttttaata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |
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| T |
52081877 |
tttgcaacaaaaattataagacatttgcataattaaaaaggcacagctttattgattcgtttaatgcaccaaaagccttaagatcggctcttttttaata |
52081778 |
T |
|
| Q |
201 |
ccattgtttttccaaatcagttatacacggctcattcatct |
241 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
52081777 |
ccattgtttttccaaatcagttatacacggctcattcatct |
52081737 |
T |
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