View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11559_low_1 (Length: 766)

Name: NF11559_low_1
Description: NF11559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11559_low_1
NF11559_low_1
[»] chr3 (44 HSPs)
chr3 (11-749)||(3745504-3746242)
chr3 (182-387)||(3754458-3754663)
chr3 (177-384)||(4157927-4158137)
chr3 (179-387)||(4142119-4142330)
chr3 (180-377)||(2678385-2678582)
chr3 (181-375)||(2686299-2686496)
chr3 (193-289)||(2696731-2696827)
chr3 (193-288)||(803217-803312)
chr3 (580-749)||(2686698-2686864)
chr3 (578-639)||(4142515-4142576)
chr3 (578-639)||(4158325-4158386)
chr3 (672-728)||(12132605-12132661)
chr3 (172-287)||(2459233-2459348)
chr3 (194-241)||(2631361-2631408)
chr3 (193-283)||(956343-956433)
chr3 (183-241)||(2644351-2644409)
chr3 (183-241)||(2659141-2659199)
chr3 (186-283)||(1007423-1007520)
chr3 (186-283)||(1022451-1022548)
chr3 (578-639)||(3754212-3754273)
chr3 (194-286)||(1891064-1891156)
chr3 (179-282)||(989359-989462)
chr3 (180-283)||(7432040-7432143)
chr3 (194-241)||(37753345-37753392)
chr3 (661-710)||(4142595-4142644)
chr3 (661-710)||(4158405-4158454)
chr3 (242-287)||(12133037-12133082)
chr3 (196-241)||(13498228-13498273)
chr3 (660-712)||(2697189-2697241)
chr3 (194-241)||(754609-754656)
chr3 (194-241)||(2492086-2492133)
chr3 (412-451)||(4142346-4142385)
chr3 (674-712)||(955929-955967)
chr3 (181-287)||(968629-968735)
chr3 (186-252)||(1940571-1940637)
chr3 (660-710)||(2441559-2441609)
chr3 (179-241)||(9587170-9587232)
chr3 (660-749)||(803675-803764)
chr3 (198-255)||(997566-997623)
chr3 (198-255)||(1013956-1014013)
chr3 (186-287)||(1936972-1937073)
chr3 (675-712)||(1941033-1941070)
chr3 (669-750)||(9496904-9496985)
chr3 (196-241)||(9561987-9562032)
[»] chr5 (19 HSPs)
chr5 (179-387)||(11081668-11081879)
chr5 (180-382)||(1427679-1427881)
chr5 (660-749)||(1428183-1428272)
chr5 (186-255)||(23766854-23766923)
chr5 (186-255)||(23816702-23816771)
chr5 (661-733)||(2067534-2067606)
chr5 (182-283)||(23861014-23861115)
chr5 (196-241)||(20301447-20301492)
chr5 (182-247)||(23769634-23769699)
chr5 (182-247)||(23819482-23819547)
chr5 (195-249)||(3181713-3181767)
chr5 (674-712)||(23754492-23754530)
chr5 (674-712)||(23774526-23774564)
chr5 (674-712)||(23819947-23819985)
chr5 (674-712)||(23861479-23861517)
chr5 (196-241)||(20292999-20293044)
chr5 (182-247)||(23732165-23732230)
chr5 (182-247)||(23764248-23764313)
chr5 (182-247)||(23814081-23814146)
[»] chr7 (2 HSPs)
chr7 (242-379)||(1078226-1078363)
chr7 (672-749)||(1078662-1078742)
[»] chr1 (1 HSPs)
chr1 (179-246)||(51381440-51381507)
[»] chr4 (4 HSPs)
chr4 (193-287)||(20019771-20019865)
chr4 (193-241)||(20016184-20016232)
chr4 (582-632)||(20020151-20020201)
chr4 (174-255)||(22672107-22672188)
[»] scaffold0044 (1 HSPs)
scaffold0044 (194-246)||(89142-89194)
[»] chr8 (2 HSPs)
chr8 (179-255)||(19727871-19727947)
chr8 (662-712)||(31144843-31144893)
[»] chr2 (1 HSPs)
chr2 (193-241)||(36577370-36577418)


Alignment Details
Target: chr3 (Bit Score: 691; Significance: 0; HSPs: 44)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 691; E-Value: 0
Query Start/End: Original strand, 11 - 749
Target Start/End: Complemental strand, 3746242 - 3745504
Alignment:
Q  11 cacagacttctggaacttttctaaaatcagtagacttcaaagtacctctcttgatatcataaagaatcaaacatttgtcaacaccccctataaacttcag 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3746242 cacagacttctggaacttttctaaaatcagtagacttcaaagtacctctcttgatatcataaagaatcaaacatttgtcaacaccccctataaacttcag 3746143  T
Q  111 tagcacttgaccatcctcaaagatatatactgctttggcgcgtacatgagaattagttggttctggcttgtaaggaatagtcaacaatttagtccaagac 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3746142 tagcacttgaccatcctcaaagatatatactgctttggcgcgtacatgagaattagttggttctggcttgtaaggaatagtcaacaatttagtccaagac 3746043  T
Q  211 tcttgctttgcatattccttcataatccaaatatcatcaccagaagtcacgcacaagcaatcccttaaaacacccaaagacgacaagtcacacacatcta 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3746042 tcttgctttgcatattccttcataatccaaatatcatcaccagaagtcacgcacaagcaatcccttaaaacacccaaagacgacaagtcacacacatcta 3745943  T
Q  311 cccctccaatactaggaggtgaaatcttttgaaaagtctcctttgccaaatcaaaagaaacaataaagcatggacataccctacccgattttannnnnnn 410  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           
T  3745942 tccctccaatactaggaggtgaaatcttttgaaaagtctcctttgccaaatcaaaagaaacaataaagcatggacataccctacccgattttattttttt 3745843  T
Q  411 ngagaacaaccaattaatagtgccactcacaaatttcccctatcgctcaacaggagcaccgccaagaggatactcctgaatgcttcttctccaaaaattg 510  Q
     ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  3745842 tgagaacaaccaattaatagtgccactcacaaatttccccgatcgctcaaaaggagcaccgccaagaggatactcctgagtgcttcttctccaaaaattg 3745743  T
Q  511 gtacccaaagtatgaacttctacttcagttttgatatcagttttgatatcccggtagataacgtacacaagaacaacaaccaccttgtaattatcctttg 610  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  3745742 gtacccaaagtatgaacttctacttcagttttgatatcagttttgatatcccggtagataaagtacacaagaacaacaaccaccttgtaattatcctttg 3745643  T
Q  611 aagaattataaccgaagccaaacgacatgtgaatatgattgcgcacatatggcttttgaaaaaggggcaactccttgaattttctaatagaagggttcca 710  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  3745642 aagaattataaccgaagccaaacgacatgtgaatatgattgcgcacatatggcttttgaaaaaggggcaactccttgaattttctaatagaggggttcca 3745543  T
Q  711 cagtataaccaagcctttataatcatctgcaatacaaag 749  Q
    |||||||||||||||||||||||||||||||||||||||    
T  3745542 cagtataaccaagcctttataatcatctgcaatacaaag 3745504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 130; E-Value: 6e-67
Query Start/End: Original strand, 182 - 387
Target Start/End: Complemental strand, 3754663 - 3754458
Alignment:
Q  182 aaggaatagtcaacaatttagtccaagactcttgctttgcatattccttcataatccaaatatcatcaccagaagtcacgcacaagcaatcccttaaaac 281  Q
    |||||||||| ||||||||||||||||||||||  ||| ||||||||||||||| ||||| |||| |||||||||||||||||||||||||||| |||||    
T  3754663 aaggaatagtaaacaatttagtccaagactctttatttccatattccttcataacccaaacatcaacaccagaagtcacgcacaagcaatccctcaaaac 3754564  T
Q  282 acccaaagacgacaagtcacacacatctacccctccaatactaggaggtgaaatcttttgaaaagtctcctttgccaaatcaaaagaaacaataaagcat 381  Q
    || ||||| ||||| |||||||||||| |||||||| | | |||||||||||||||||||| | | |||||||||||||||||||||||||||||||| |    
T  3754563 actcaaagccgacatgtcacacacatccacccctcccaaattaggaggtgaaatcttttgatatgactcctttgccaaatcaaaagaaacaataaagcgt 3754464  T
Q  382 ggacat 387  Q
    ||||||    
T  3754463 ggacat 3754458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 125; E-Value: 6e-64
Query Start/End: Original strand, 177 - 384
Target Start/End: Original strand, 4157927 - 4158137
Alignment:
Q  177 cttgtaaggaatagtcaacaatttagtccaagactcttgctttgcatattccttcataatccaaatatcatcaccagaagt---cacgcacaagcaatcc 273  Q
    ||||||||  ||||| ||||||||||||||||||||||  ||| ||||||||||||||| ||||| ||||| |||||||||   ||||||||||||||||    
T  4157927 cttgtaagagatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaacatcataaccagaagtggtcacgcacaagcaatcc 4158026  T
Q  274 cttaaaacacccaaagacgacaagtcacacacatctacccctccaatactaggaggtgaaatcttttgaaaagtctcctttgccaaatcaaaagaaacaa 373  Q
    || ||||||||||||| |||||||||||||||||| |||||||| | | |||||||||||||||||||| ||| |||||||||||||||||| |||||||    
T  4158027 ctcaaaacacccaaagccgacaagtcacacacatccacccctcccaaattaggaggtgaaatcttttgataagactcctttgccaaatcaaatgaaacaa 4158126  T
Q  374 taaagcatgga 384  Q
    |||||||||||    
T  4158127 taaagcatgga 4158137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 179 - 387
Target Start/End: Original strand, 4142119 - 4142330
Alignment:
Q  179 tgtaaggaatagtcaacaatttagtccaagactcttgctttgcatattccttcataatccaaatatcatcaccagaagtc---acgcacaagcaatccct 275  Q
    ||||||||||||| ||||||||||||||||||||||  ||| ||||||||||||||| ||||| |||||  |||||||||   |||||||||||||||||    
T  4142119 tgtaaggaatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaacatcatagccagaagtcgtcacgcacaagcaatccct 4142218  T
Q  276 taaaacacccaaagacgacaagtcacacacatctacccctccaatactaggaggtgaaatcttttgaaaagtctcctttgccaaatcaaaagaaacaata 375  Q
     ||||||||||||  |||||||||||  ||||| |||||||| | | |||||||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  4142219 caaaacacccaaaaccgacaagtcaccaacatccacccctcccaaattaggaggtgaaatcttttgataagactcctttgccaaatcaaaagaaacaata 4142318  T
Q  376 aagcatggacat 387  Q
    ||||||||||||    
T  4142319 aagcatggacat 4142330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 180 - 377
Target Start/End: Original strand, 2678385 - 2678582
Alignment:
Q  180 gtaaggaatagtcaacaatttagtccaagactcttgctttgcatattccttcataatccaaatatcatcaccagaagtcacgcacaagcaatcccttaaa 279  Q
    |||||||||||| |||||||||||||| |||||||  ||| ||||||  ||||||| ||||| |||||||||| |||||| ||||||||||||| | |||    
T  2678385 gtaaggaatagtgaacaatttagtccatgactctttttttccatattgtttcataacccaaacatcatcaccacaagtcaagcacaagcaatccttcaaa 2678484  T
Q  280 acacccaaagacgacaagtcacacacatctacccctccaatactaggaggtgaaatcttttgaaaagtctcctttgccaaatcaaaagaaacaataaa 377  Q
    |||||||| |  | ||  | || ||||| | ||||||||  |||||||||||| | ||||||| ||| ||| ||||||||||||||||||||||||||    
T  2678485 acacccaaggtaggcattttacccacatttgcccctccataactaggaggtgatagcttttgataagactcttttgccaaatcaaaagaaacaataaa 2678582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 181 - 375
Target Start/End: Original strand, 2686299 - 2686496
Alignment:
Q  181 taaggaatagtcaacaatttagtccaagactcttgctttgcatattccttcataat---ccaaatatcatcaccagaagtcacgcacaagcaatccctta 277  Q
    ||||||||||| ||||||||| ||||||||||||  ||| ||||||||||||||||   ||||| |||||||||| |  ||| |||||| |||||||| |    
T  2686299 taaggaatagtgaacaatttattccaagactctttttttccatattccttcataataacccaaacatcatcaccacagatcaagcacaaacaatccctca 2686398  T
Q  278 aaacacccaaagacgacaagtcacacacatctacccctccaatactaggaggtgaaatcttttgaaaagtctcctttgccaaatcaaaagaaacaata 375  Q
    |||||||||| |    || || ||| |||||||||||||||  ||||||||| || ||||||||| ||| ||| ||||||||||||||||||||||||    
T  2686399 aaacacccaaggtaagcatgttacagacatctacccctccataactaggaggggatatcttttgataagactcttttgccaaatcaaaagaaacaata 2686496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 193 - 289
Target Start/End: Original strand, 2696731 - 2696827
Alignment:
Q  193 aacaatttagtccaagactcttgctttgcatattccttcataatccaaatatcatcaccagaagtcacgcacaagcaatcccttaaaacacccaaag 289  Q
    ||||||||| ||||||||||||  ||| ||||||||||||||||||||| ||||| | | ||| ||| || ||||||||||||||| ||||||||||    
T  2696731 aacaatttaatccaagactctttatttccatattccttcataatccaaacatcatgatcggaaatcaagcccaagcaatcccttaacacacccaaag 2696827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 193 - 288
Target Start/End: Original strand, 803217 - 803312
Alignment:
Q  193 aacaatttagtccaagactcttgctttgcatattccttcataatccaaatatcatcaccagaagtcacgcacaagcaatcccttaaaacacccaaa 288  Q
    ||||| ||||||||||||||||  ||| ||||||| ||||||| ||||| ||||||||||||| ||| ||||||||||||||| || | |||||||    
T  803217 aacaacttagtccaagactctttatttccatattctttcataacccaaacatcatcaccagaaatcatgcacaagcaatccctcaacatacccaaa 803312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 580 - 749
Target Start/End: Original strand, 2686698 - 2686864
Alignment:
Q  580 agaacaacaaccaccttgtaattatcctttgaagaattataaccgaagccaaacgacatgtgaatatgattgcgcacatatggcttttgaaaaaggggca 679  Q
    |||||||||| |||||||||||| |||||  ||||||  || |||||||||||||||||   || |||| |    || | |||||||| |||||||||||    
T  2686698 agaacaacaatcaccttgtaattctccttaaaagaatcgtagccgaagccaaacgacattctaagatgagta---acctttggcttttcaaaaaggggca 2686794  T
Q  680 actccttgaattttctaatagaagggttccacagtataaccaagcctttataatcatctgcaatacaaag 749  Q
    |||| || |||||||  | |||||||||||||| |||||| ||||||||||||  | || ||||||||||    
T  2686795 actctttaaattttcgtaaagaagggttccacaatataactaagcctttataactacctccaatacaaag 2686864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 578 - 639
Target Start/End: Original strand, 4142515 - 4142576
Alignment:
Q  578 caagaacaacaaccaccttgtaattatcctttgaagaattataaccgaagccaaacgacatg 639  Q
    ||||||||||||||||||||||||||||||||||||||| ||| || |||||||||| ||||    
T  4142515 caagaacaacaaccaccttgtaattatcctttgaagaatcatagccaaagccaaacgtcatg 4142576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 578 - 639
Target Start/End: Original strand, 4158325 - 4158386
Alignment:
Q  578 caagaacaacaaccaccttgtaattatcctttgaagaattataaccgaagccaaacgacatg 639  Q
    ||||||||||||||||||||||||||||||||||||||| ||| || |||||||||| ||||    
T  4158325 caagaacaacaaccaccttgtaattatcctttgaagaatcatagccaaagccaaacgtcatg 4158386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 672 - 728
Target Start/End: Complemental strand, 12132661 - 12132605
Alignment:
Q  672 aaggggcaactccttgaattttctaatagaagggttccacagtataaccaagccttt 728  Q
    ||||||||||||||||||||||||||| ||||||||| ||| ||||| |||||||||    
T  12132661 aaggggcaactccttgaattttctaatggaagggttcaacaatataatcaagccttt 12132605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 172 - 287
Target Start/End: Complemental strand, 2459348 - 2459233
Alignment:
Q  172 tctggcttgtaaggaatagtcaacaatttagtccaagactcttgctttgcatattccttcataatccaaatatcatcaccagaagtcacgcacaagcaat 271  Q
    |||||| |||||| ||  || |||||||| |||||||||||||  ||| ||||||||||||||||||||| | ||| ||||||| | | | |||||||||    
T  2459348 tctggcatgtaagaaacggtaaacaattttgtccaagactctttatttccatattccttcataatccaaacaacatgaccagaaattatggacaagcaat 2459249  T
Q  272 cccttaaaacacccaa 287  Q
    | || || ||||||||    
T  2459248 cactcaatacacccaa 2459233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 194 - 241
Target Start/End: Complemental strand, 2631408 - 2631361
Alignment:
Q  194 acaatttagtccaagactcttgctttgcatattccttcataatccaaa 241  Q
    |||||||||||||||||||||| ||| |||||||||||||||||||||    
T  2631408 acaatttagtccaagactcttgatttccatattccttcataatccaaa 2631361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 193 - 283
Target Start/End: Complemental strand, 956433 - 956343
Alignment:
Q  193 aacaatttagtccaagactcttgctttgcatattccttcataatccaaatatcatcaccagaagtcacgcacaagcaatcccttaaaacac 283  Q
    |||||||||  |||||||||||  ||| ||||||||||||||||||||| |||   |||| || ||| ||||||||||||||| |||||||    
T  956433 aacaatttatgccaagactctttttttccatattccttcataatccaaacatcgcaaccaaaaatcatgcacaagcaatccctgaaaacac 956343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 183 - 241
Target Start/End: Original strand, 2644351 - 2644409
Alignment:
Q  183 aggaatagtcaacaatttagtccaagactcttgctttgcatattccttcataatccaaa 241  Q
    |||||||||  |||||||||||||||||||||| ||| |||| ||||||||||||||||    
T  2644351 aggaatagtgtacaatttagtccaagactcttgatttccatactccttcataatccaaa 2644409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 183 - 241
Target Start/End: Original strand, 2659141 - 2659199
Alignment:
Q  183 aggaatagtcaacaatttagtccaagactcttgctttgcatattccttcataatccaaa 241  Q
    |||||||||  |||||||||||||||||||||| ||| |||| ||||||||||||||||    
T  2659141 aggaatagtgtacaatttagtccaagactcttgatttccatactccttcataatccaaa 2659199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 186 - 283
Target Start/End: Complemental strand, 1007520 - 1007423
Alignment:
Q  186 aatagtcaacaatttagtccaagactcttgctttgcatattccttcataatccaaatatcatcaccagaagtcacgcacaagcaatcccttaaaacac 283  Q
    |||||| |||||||||||||| ||||| |  ||| ||||||||||||| | ||||| |||||||||| ||  ||||  |||||||||||| |||||||    
T  1007520 aatagtgaacaatttagtccaggactcgttatttccatattccttcattacccaaacatcatcaccacaaaacacggtcaagcaatccctaaaaacac 1007423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 186 - 283
Target Start/End: Complemental strand, 1022548 - 1022451
Alignment:
Q  186 aatagtcaacaatttagtccaagactcttgctttgcatattccttcataatccaaatatcatcaccagaagtcacgcacaagcaatcccttaaaacac 283  Q
    |||||| |||||||||||||| ||||| |  ||| ||||||||||||| | ||||| |||||||||| ||  ||||  |||||||||||| |||||||    
T  1022548 aatagtgaacaatttagtccatgactcgttatttccatattccttcattacccaaacatcatcaccacaaaacacggtcaagcaatccctaaaaacac 1022451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 578 - 639
Target Start/End: Complemental strand, 3754273 - 3754212
Alignment:
Q  578 caagaacaacaaccaccttgtaattatcctttgaagaattataaccgaagccaaacgacatg 639  Q
    |||||||||||||||||||||||||||| ||| |||||| ||| || |||||||||| ||||    
T  3754273 caagaacaacaaccaccttgtaattatcgtttaaagaatcatagccaaagccaaacgtcatg 3754212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 194 - 286
Target Start/End: Original strand, 1891064 - 1891156
Alignment:
Q  194 acaatttagtccaagactcttgctttgcatattccttcataatccaaatatcatcaccagaagtcacgcacaagcaatcccttaaaacaccca 286  Q
    |||||||||||||||| ||||  ||| ||| ||||||||||||||||| ||||| |||| ||  || |||||| |||||||| || |||||||    
T  1891064 acaatttagtccaagagtctttatttccatgttccttcataatccaaacatcatgaccaaaaaccaggcacaaacaatccctcaacacaccca 1891156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 179 - 282
Target Start/End: Complemental strand, 989462 - 989359
Alignment:
Q  179 tgtaaggaatagtcaacaatttagtccaagactcttgctttgcatattccttcataatccaaatatcatcaccagaagtcacgcacaagcaatcccttaa 278  Q
    |||||| |||||| ||||||||||||||||||||||  ||| | || || ||||| | ||||| |||||||||||||   | |||||||||||| || ||    
T  989462 tgtaagaaatagtgaacaatttagtccaagactctttatttccgtactctttcattacccaaacatcatcaccagaaaaaatgcacaagcaatctctcaa 989363  T
Q  279 aaca 282  Q
    ||||    
T  989362 aaca 989359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 180 - 283
Target Start/End: Original strand, 7432040 - 7432143
Alignment:
Q  180 gtaaggaatagtcaacaatttagtccaagactcttgctttgcatattccttcataatccaaatatcatcaccagaagtcacgcacaagcaatcccttaaa 279  Q
    ||||| ||| || |||||||||||||| || ||||  ||| |||||||||||||| |||||| ||||| ||||| |   | ||||||||||||||||||     
T  7432040 gtaagaaatggtgaacaatttagtccacgattctttatttccatattccttcatactccaaacatcatgaccagcaaggatgcacaagcaatcccttaat 7432139  T
Q  280 acac 283  Q
    ||||    
T  7432140 acac 7432143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 194 - 241
Target Start/End: Original strand, 37753345 - 37753392
Alignment:
Q  194 acaatttagtccaagactcttgctttgcatattccttcataatccaaa 241  Q
    ||||||||||||||||||||| |||| ||||||||| |||||||||||    
T  37753345 acaatttagtccaagactctttctttccatattcctccataatccaaa 37753392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 661 - 710
Target Start/End: Original strand, 4142595 - 4142644
Alignment:
Q  661 ggcttttgaaaaaggggcaactccttgaattttctaatagaagggttcca 710  Q
    ||||||| |||||||||||||||||||||||||||  | |||||||||||    
T  4142595 ggcttttcaaaaaggggcaactccttgaattttcttgtggaagggttcca 4142644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 661 - 710
Target Start/End: Original strand, 4158405 - 4158454
Alignment:
Q  661 ggcttttgaaaaaggggcaactccttgaattttctaatagaagggttcca 710  Q
    ||||||| |||||||||||||||||||||||||||  | |||||||||||    
T  4158405 ggcttttcaaaaaggggcaactccttgaattttcttgttgaagggttcca 4158454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 242 - 287
Target Start/End: Complemental strand, 12133082 - 12133037
Alignment:
Q  242 tatcatcaccagaagtcacgcacaagcaatcccttaaaacacccaa 287  Q
    ||||||||| |||||||| |||||||||||||||||| ||||||||    
T  12133082 tatcatcacgagaagtcaggcacaagcaatcccttaacacacccaa 12133037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 196 - 241
Target Start/End: Complemental strand, 13498273 - 13498228
Alignment:
Q  196 aatttagtccaagactcttgctttgcatattccttcataatccaaa 241  Q
    |||||||||||||||||||  ||| |||||||||||||||||||||    
T  13498273 aatttagtccaagactctttatttccatattccttcataatccaaa 13498228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 660 - 712
Target Start/End: Original strand, 2697189 - 2697241
Alignment:
Q  660 tggcttttgaaaaaggggcaactccttgaattttctaatagaagggttccaca 712  Q
    |||||||||||||  |||||| ||||| ||||||||||| |||||||||||||    
T  2697189 tggcttttgaaaagagggcaattccttaaattttctaattgaagggttccaca 2697241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 241
Target Start/End: Original strand, 754609 - 754656
Alignment:
Q  194 acaatttagtccaagactcttgctttgcatattccttcataatccaaa 241  Q
    |||||||||||||||||||||| | | |||| ||||||||||||||||    
T  754609 acaatttagtccaagactcttgatctccatactccttcataatccaaa 754656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 241
Target Start/End: Complemental strand, 2492133 - 2492086
Alignment:
Q  194 acaatttagtccaagactcttgctttgcatattccttcataatccaaa 241  Q
    |||||||||||||||||||| | ||| |||| ||||||||||||||||    
T  2492133 acaatttagtccaagactctcgatttccatactccttcataatccaaa 2492086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 412 - 451
Target Start/End: Original strand, 4142346 - 4142385
Alignment:
Q  412 gagaacaaccaattaatagtgccactcacaaatttcccct 451  Q
    ||||||||||||||||| |||||||||||||||| |||||    
T  4142346 gagaacaaccaattaattgtgccactcacaaattccccct 4142385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 674 - 712
Target Start/End: Complemental strand, 955967 - 955929
Alignment:
Q  674 ggggcaactccttgaattttctaatagaagggttccaca 712  Q
    ||||||| |||||||||||||||||||||||||| ||||    
T  955967 ggggcaaatccttgaattttctaatagaagggttacaca 955929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 181 - 287
Target Start/End: Complemental strand, 968735 - 968629
Alignment:
Q  181 taaggaatagtcaacaatttagtccaagactcttgctttgcatattccttcataatccaaatatcatcaccagaagtcacgcacaagcaatcccttaaaa 280  Q
    |||| |||||| || ||||||||||| |||||||  ||| ||| ||||||||||| ||||| ||||| |||   | ||| |||||| |||||||| || |    
T  968735 taagaaatagtgaataatttagtccatgactctttatttccatgttccttcataacccaaacatcatgaccgataatcatgcacaaacaatccctcaaca 968636  T
Q  281 cacccaa 287  Q
    |||||||    
T  968635 cacccaa 968629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 186 - 252
Target Start/End: Original strand, 1940571 - 1940637
Alignment:
Q  186 aatagtcaacaatttagtccaagactcttgctttgcatattccttcataatccaaatatcatcacca 252  Q
    |||||| |||||||||||||| || ||||| ||| ||| ||||||||||| ||||| ||||| ||||    
T  1940571 aatagtgaacaatttagtccacgagtcttgatttccatgttccttcataacccaaacatcatgacca 1940637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 660 - 710
Target Start/End: Complemental strand, 2441609 - 2441559
Alignment:
Q  660 tggcttttgaaaaaggggcaactccttgaattttctaatagaagggttcca 710  Q
    |||||||||||| ||||| |||||||| | ||||||||| |||||||||||    
T  2441609 tggcttttgaaataggggaaactccttaatttttctaatggaagggttcca 2441559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 179 - 241
Target Start/End: Original strand, 9587170 - 9587232
Alignment:
Q  179 tgtaaggaatagtcaacaatttagtccaagactcttgctttgcatattccttcataatccaaa 241  Q
    ||||||||||| |  ||||||| ||||||| |||||  ||| |||||||||||||||||||||    
T  9587170 tgtaaggaatattgtacaattttgtccaaggctctttatttccatattccttcataatccaaa 9587232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 660 - 749
Target Start/End: Original strand, 803675 - 803764
Alignment:
Q  660 tggcttttgaaaaaggggcaactccttgaattttctaatagaagggttccacagtataaccaagcctttataatcatctgcaatacaaag 749  Q
    ||||||||||||| | || ||||||||  |||| ||||| |||||||||||||  ||||| ||||||| || || ||| |||| ||||||    
T  803675 tggcttttgaaaaggaggtaactcctttgatttcctaatggaagggttccacaaaataacaaagccttcattataatcggcaagacaaag 803764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 255
Target Start/End: Complemental strand, 997623 - 997566
Alignment:
Q  198 tttagtccaagactcttgctttgcatattccttcataatccaaatatcatcaccagaa 255  Q
    |||||||||||||||||  ||| ||||||||||||| | ||||| | |||||||||||    
T  997623 tttagtccaagactctttatttccatattccttcattacccaaacaacatcaccagaa 997566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 255
Target Start/End: Complemental strand, 1014013 - 1013956
Alignment:
Q  198 tttagtccaagactcttgctttgcatattccttcataatccaaatatcatcaccagaa 255  Q
    |||||||||||||||||  ||| ||||||||||||| | ||||| | |||||||||||    
T  1014013 tttagtccaagactctttatttccatattccttcattacccaaacaacatcaccagaa 1013956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 287
Target Start/End: Original strand, 1936972 - 1937073
Alignment:
Q  186 aatagtcaacaatttagtccaagactcttgctttgcatattccttcataatccaaatatcatcaccagaagtcacgcacaagcaatcccttaaaacaccc 285  Q
    |||||| |||||||||| ||| || ||||  |||  |||||||||||||| ||||| ||||| |||| ||  || |||||| |||||||| || ||||||    
T  1936972 aatagtgaacaatttagaccaggattctttatttttatattccttcataacccaaacatcataaccaaaaaccatgcacaaacaatccctcaacacaccc 1937071  T
Q  286 aa 287  Q
    ||    
T  1937072 aa 1937073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 675 - 712
Target Start/End: Original strand, 1941033 - 1941070
Alignment:
Q  675 gggcaactccttgaattttctaatagaagggttccaca 712  Q
    |||||| ||||||||||||||||| |||||||||||||    
T  1941033 gggcaattccttgaattttctaatggaagggttccaca 1941070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 669 - 750
Target Start/End: Original strand, 9496904 - 9496985
Alignment:
Q  669 aaaaaggggcaactccttgaattttctaatagaagggttccacagtataaccaagcctttataatcatctgcaatacaaagt 750  Q
    |||||| |||||||| || |||||||| |  ||||||||||||| |||| | |||||||||||| | ||| |||||| ||||    
T  9496904 aaaaagtggcaactctttaaattttcttacggaagggttccacaatatacctaagcctttataaccgtctccaatacgaagt 9496985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 241
Target Start/End: Original strand, 9561987 - 9562032
Alignment:
Q  196 aatttagtccaagactcttgctttgcatattccttcataatccaaa 241  Q
    |||||||||||||||||||| ||| |||| || |||||||||||||    
T  9561987 aatttagtccaagactcttgatttccatactcattcataatccaaa 9562032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 102; Significance: 3e-50; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 179 - 387
Target Start/End: Complemental strand, 11081879 - 11081668
Alignment:
Q  179 tgtaaggaatagtcaacaatttagtccaagactcttgctttgcatattccttcataatccaaatatcatcaccagaagtc---acgcacaagcaatccct 275  Q
    ||||||||||||| ||||||||||||||||||||||  ||| |||| |||||||||| ||||| |||||||| || ||||   || ||||||||||||||    
T  11081879 tgtaaggaatagtaaacaatttagtccaagactctttatttccatactccttcataacccaaacatcatcactagtagtcgtcacacacaagcaatccct 11081780  T
Q  276 taaaacacccaaagacgacaagtcacacacatctacccctccaatactaggaggtgaaatcttttgaaaagtctcctttgccaaatcaaaagaaacaata 375  Q
     ||||||||||||| |||||||| || |||||| |||||| | | | |||||||||||||||||||| ||| ||||||||||||||| ||| ||||||||    
T  11081779 caaaacacccaaagccgacaagttacgcacatccaccccttccaaattaggaggtgaaatcttttgataagactcctttgccaaatcgaaacaaacaata 11081680  T
Q  376 aagcatggacat 387  Q
    |||| |||||||    
T  11081679 aagcgtggacat 11081668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 180 - 382
Target Start/End: Original strand, 1427679 - 1427881
Alignment:
Q  180 gtaaggaatagtcaacaatttagtccaagactcttgctttgcatattccttcataatccaaatatcatcaccagaagtcacgcacaagcaatcccttaaa 279  Q
    ||||| ||| || |||| |||| |||||||||||   ||| |||| || ||||||| ||||| |||||||||| ||| || | ||||| || |||||| |    
T  1427679 gtaagaaattgtgaacagtttaatccaagactctgtatttccatactctttcataacccaaacatcatcaccataagacaaggacaagaaaccccttaga 1427778  T
Q  280 acacccaaagacgacaagtcacacacatctacccctccaatactaggaggtgaaatcttttgaaaagtctcctttgccaaatcaaaagaaacaataaagc 379  Q
    |||||||| | ||| ||| ||| ||||||||| ||||||  | | ||| |  ||| ||||||| ||| ||||||  |||||||||||| |||||||||||    
T  1427779 acacccaaggtcgagaagccactcacatctactcctccacgatttggaagcaaaaccttttgataagactccttccccaaatcaaaagcaacaataaagc 1427878  T
Q  380 atg 382  Q
    |||    
T  1427879 atg 1427881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 660 - 749
Target Start/End: Original strand, 1428183 - 1428272
Alignment:
Q  660 tggcttttgaaaaaggggcaactccttgaattttctaatagaagggttccacagtataaccaagcctttataatcatctgcaatacaaag 749  Q
    ||||||||  ||||||||||||||| ||||||||||||| | ||||||||||| |||||  ||| ||||| |||| | ||||||||||||    
T  1428183 tggcttttttaaaaggggcaactccctgaattttctaatggtagggttccacaatataaataagtctttagaatcgtttgcaatacaaag 1428272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 186 - 255
Target Start/End: Original strand, 23766854 - 23766923
Alignment:
Q  186 aatagtcaacaatttagtccaagactcttgctttgcatattccttcataatccaaatatcatcaccagaa 255  Q
    |||||| ||||||||||||||||||||||  ||| ||||||| ||||||||||||| ||||| |||||||    
T  23766854 aatagtgaacaatttagtccaagactctttatttccatattctttcataatccaaacatcattaccagaa 23766923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 186 - 255
Target Start/End: Original strand, 23816702 - 23816771
Alignment:
Q  186 aatagtcaacaatttagtccaagactcttgctttgcatattccttcataatccaaatatcatcaccagaa 255  Q
    |||||| ||||||||||||||||||||||  ||| ||||||| ||||||||||||| ||||| |||||||    
T  23816702 aatagtgaacaatttagtccaagactctttatttccatattctttcataatccaaacatcattaccagaa 23816771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 661 - 733
Target Start/End: Original strand, 2067534 - 2067606
Alignment:
Q  661 ggcttttgaaaaaggggcaactccttgaattttctaatagaagggttccacagtataaccaagcctttataat 733  Q
    ||||||| |||||| ||||||||||||| | |||||||||||||||| |||| |||||| |||||| ||||||    
T  2067534 ggcttttcaaaaagtggcaactccttgattgttctaatagaagggttacacaatataactaagcctgtataat 2067606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 182 - 283
Target Start/End: Original strand, 23861014 - 23861115
Alignment:
Q  182 aaggaatagtcaacaatttagtccaagactcttgctttgcatattccttcataatccaaatatcatcaccagaagtcacgcacaagcaatcccttaaaac 281  Q
    |||||||||| |||||||||||||||||| ||| | |  ||||||||||||| ||||||| ||||| || |||| ||  |||||| |||| ||| |||||    
T  23861014 aaggaatagtgaacaatttagtccaagacgctttcatcccatattccttcattatccaaacatcattactagaaatccagcacaaacaattcctgaaaac 23861113  T
Q  282 ac 283  Q
    ||    
T  23861114 ac 23861115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 196 - 241
Target Start/End: Complemental strand, 20301492 - 20301447
Alignment:
Q  196 aatttagtccaagactcttgctttgcatattccttcataatccaaa 241  Q
    |||||||||||||||||||   ||||||||||||||||||||||||    
T  20301492 aatttagtccaagactctttaattgcatattccttcataatccaaa 20301447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 182 - 247
Target Start/End: Original strand, 23769634 - 23769699
Alignment:
Q  182 aaggaatagtcaacaatttagtccaagactcttgctttgcatattccttcataatccaaatatcat 247  Q
    |||| ||||| |||||||||||||||||| |||  ||  ||||||||||||||||||||| |||||    
T  23769634 aaggtatagtgaacaatttagtccaagacgctttattcccatattccttcataatccaaacatcat 23769699  T

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Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 182 - 247
Target Start/End: Original strand, 23819482 - 23819547
Alignment:
Q  182 aaggaatagtcaacaatttagtccaagactcttgctttgcatattccttcataatccaaatatcat 247  Q
    |||| ||||| |||||||||||||||||| |||  ||  ||||||||||||||||||||| |||||    
T  23819482 aaggtatagtgaacaatttagtccaagacgctttattcccatattccttcataatccaaacatcat 23819547  T

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Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 195 - 249
Target Start/End: Complemental strand, 3181767 - 3181713
Alignment:
Q  195 caatttagtccaagactcttgctttgcatattccttcataatccaaatatcatca 249  Q
    ||||||| ||||||||||||  ||| ||||||||||||||| ||||| |||||||    
T  3181767 caatttaatccaagactcttcatttccatattccttcataagccaaacatcatca 3181713  T

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Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 674 - 712
Target Start/End: Original strand, 23754492 - 23754530
Alignment:
Q  674 ggggcaactccttgaattttctaatagaagggttccaca 712  Q
    ||||||| ||||||||||||||||| |||||||||||||    
T  23754492 ggggcaattccttgaattttctaatggaagggttccaca 23754530  T

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Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 674 - 712
Target Start/End: Original strand, 23774526 - 23774564
Alignment:
Q  674 ggggcaactccttgaattttctaatagaagggttccaca 712  Q
    ||||||| ||||||||||||||||| |||||||||||||    
T  23774526 ggggcaattccttgaattttctaatggaagggttccaca 23774564  T

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Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 674 - 712
Target Start/End: Original strand, 23819947 - 23819985
Alignment:
Q  674 ggggcaactccttgaattttctaatagaagggttccaca 712  Q
    ||||||| ||||||||||||||||| |||||||||||||    
T  23819947 ggggcaattccttgaattttctaatggaagggttccaca 23819985  T

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Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 674 - 712
Target Start/End: Original strand, 23861479 - 23861517
Alignment:
Q  674 ggggcaactccttgaattttctaatagaagggttccaca 712  Q
    ||||||| ||||||||||||||||| |||||||||||||    
T  23861479 ggggcaattccttgaattttctaatggaagggttccaca 23861517  T

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Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 241
Target Start/End: Complemental strand, 20293044 - 20292999
Alignment:
Q  196 aatttagtccaagactcttgctttgcatattccttcataatccaaa 241  Q
    |||||||||||||||||||   || |||||||||||||||||||||    
T  20293044 aatttagtccaagactctttaattccatattccttcataatccaaa 20292999  T

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Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 247
Target Start/End: Complemental strand, 23732230 - 23732165
Alignment:
Q  182 aaggaatagtcaacaatttagtccaagactcttgctttgcatattccttcataatccaaatatcat 247  Q
    |||||||||| |||| |||| |||||||| |||  ||  ||||||||||||||||||||| |||||    
T  23732230 aaggaatagtgaacagtttattccaagacgctttattcccatattccttcataatccaaacatcat 23732165  T

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Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 247
Target Start/End: Original strand, 23764248 - 23764313
Alignment:
Q  182 aaggaatagtcaacaatttagtccaagactcttgctttgcatattccttcataatccaaatatcat 247  Q
    |||||||||| |||||| ||||||||||| ||| | |  ||||||||||||| ||||||| |||||    
T  23764248 aaggaatagtgaacaatgtagtccaagacgctttcatcccatattccttcattatccaaacatcat 23764313  T

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Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 247
Target Start/End: Original strand, 23814081 - 23814146
Alignment:
Q  182 aaggaatagtcaacaatttagtccaagactcttgctttgcatattccttcataatccaaatatcat 247  Q
    |||||||||| |||||||||||||||||| ||  | |  ||||||||||||| ||||||| |||||    
T  23814081 aaggaatagtgaacaatttagtccaagacgctgtcatcccatattccttcattatccaaacatcat 23814146  T

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Target: chr7 (Bit Score: 46; Significance: 8e-17; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 242 - 379
Target Start/End: Original strand, 1078226 - 1078363
Alignment:
Q  242 tatcatcaccagaagtcacgcacaagcaatcccttaaaacacccaaagacgacaagtcacacacatctacccctccaatactaggaggtgaaatcttttg 341  Q
    ||||||||| ||||| || ||||||||||||||| || |||||||| |   | |||| |||||||||||||||||||  |  ||||||  ||| ||||||    
T  1078226 tatcatcacgagaagccaggcacaagcaatccctcaacacacccaaggctaagaagtgacacacatctacccctccataatcaggaggcaaaaccttttg 1078325  T
Q  342 aaaagtctcctttgccaaatcaaaagaaacaataaagc 379  Q
    | |||  || ||| ||||||||||||||||||||||||    
T  1078326 ataagattcttttcccaaatcaaaagaaacaataaagc 1078363  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 672 - 749
Target Start/End: Original strand, 1078662 - 1078742
Alignment:
Q  672 aaggggcaactccttgaattttctaatagaagggttccacagtataaccaagccttt---ataatcatctgcaatacaaag 749  Q
    ||||||||||||||||||||||||||| ||||||||| ||| |||||| ||||||||   ||  |||||||||||||||||    
T  1078662 aaggggcaactccttgaattttctaatggaagggttcaacaatataactaagcctttgtcattgtcatctgcaatacaaag 1078742  T

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Target: chr1 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 179 - 246
Target Start/End: Original strand, 51381440 - 51381507
Alignment:
Q  179 tgtaaggaatagtcaacaatttagtccaagactcttgctttgcatattccttcataatccaaatatca 246  Q
    ||||||||||| | ||||||||||||||||||||||  ||| ||||||| ||||||||||||||||||    
T  51381440 tgtaaggaatactgaacaatttagtccaagactcttcatttccatattctttcataatccaaatatca 51381507  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 193 - 287
Target Start/End: Original strand, 20019771 - 20019865
Alignment:
Q  193 aacaatttagtccaagactcttgctttgcatattccttcataatccaaatatcatcaccagaagtcacgcacaagcaatcccttaaaacacccaa 287  Q
    |||||||||||||||||||||||  || ||||||||||||| | ||||| ||||| ||||||| | | ||||||| |||| ||||| ||||||||    
T  20019771 aacaatttagtccaagactcttgaattccatattccttcatgacccaaacatcattaccagaaattatgcacaagaaatctcttaacacacccaa 20019865  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 193 - 241
Target Start/End: Original strand, 20016184 - 20016232
Alignment:
Q  193 aacaatttagtccaagactcttgctttgcatattccttcataatccaaa 241  Q
    |||||||||||||||||||||||  || ||||||||||||| |||||||    
T  20016184 aacaatttagtccaagactcttgaattccatattccttcatgatccaaa 20016232  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 582 - 632
Target Start/End: Original strand, 20020151 - 20020201
Alignment:
Q  582 aacaacaaccaccttgtaattatcctttgaagaattataaccgaagccaaa 632  Q
    ||||||||||||||||||||| ||| ||||||||| ||| || ||||||||    
T  20020151 aacaacaaccaccttgtaattgtccgttgaagaatcatagccaaagccaaa 20020201  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 255
Target Start/End: Original strand, 22672107 - 22672188
Alignment:
Q  174 tggcttgtaaggaatagtcaacaatttagtccaagactcttgctttgcatattccttcataatccaaatatcatcaccagaa 255  Q
    |||| |||||| |||||| ||||||||||||||||| || |  ||| ||||||||||||| | |||||  || |||||||||    
T  22672107 tggcatgtaagaaatagtgaacaatttagtccaagattccttatttccatattccttcattacccaaacgtcgtcaccagaa 22672188  T

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Target: scaffold0044 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 194 - 246
Target Start/End: Complemental strand, 89194 - 89142
Alignment:
Q  194 acaatttagtccaagactcttgctttgcatattccttcataatccaaatatca 246  Q
    |||||||||||||||||||||  ||| ||||||||||||||| ||||||||||    
T  89194 acaatttagtccaagactctttatttccatattccttcataacccaaatatca 89142  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 179 - 255
Target Start/End: Complemental strand, 19727947 - 19727871
Alignment:
Q  179 tgtaaggaatagtcaacaatttagtccaagactcttgctttgcatattccttcataatccaaatatcatcaccagaa 255  Q
    |||||| |||||| |||| ||||||||| |||||||  |||||||||||  |||||| ||||| |||||||||||||    
T  19727947 tgtaagaaatagtgaacagtttagtccatgactctttatttgcatattctgtcataacccaaacatcatcaccagaa 19727871  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 662 - 712
Target Start/End: Original strand, 31144843 - 31144893
Alignment:
Q  662 gcttttgaaaaaggggcaactccttgaattttctaatagaagggttccaca 712  Q
    ||||||||| |  |||||| ||||||||||||||||| |||||||||||||    
T  31144843 gcttttgaagatagggcaattccttgaattttctaatggaagggttccaca 31144893  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 193 - 241
Target Start/End: Complemental strand, 36577418 - 36577370
Alignment:
Q  193 aacaatttagtccaagactcttgctttgcatattccttcataatccaaa 241  Q
    ||||||||| ||||||||||||  ||| |||||||||||||||||||||    
T  36577418 aacaatttaatccaagactctttatttccatattccttcataatccaaa 36577370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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