View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11559_low_13 (Length: 241)

Name: NF11559_low_13
Description: NF11559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11559_low_13
NF11559_low_13
[»] chr2 (11 HSPs)
chr2 (19-221)||(24489972-24490177)
chr2 (19-149)||(32116364-32116494)
chr2 (29-176)||(9677616-9677763)
chr2 (46-134)||(28920313-28920401)
chr2 (26-139)||(3474600-3474715)
chr2 (27-132)||(10234990-10235095)
chr2 (37-140)||(38085134-38085237)
chr2 (28-134)||(35431339-35431445)
chr2 (37-132)||(22726915-22727010)
chr2 (22-119)||(23249908-23250005)
chr2 (28-140)||(21564501-21564613)
[»] chr3 (11 HSPs)
chr3 (27-225)||(22757370-22757570)
chr3 (19-224)||(37509920-37510127)
chr3 (26-225)||(13496762-13496963)
chr3 (37-129)||(28033685-28033777)
chr3 (37-145)||(33856102-33856210)
chr3 (44-132)||(41736611-41736699)
chr3 (26-139)||(30828933-30829046)
chr3 (27-132)||(4995249-4995354)
chr3 (46-134)||(54264839-54264926)
chr3 (190-224)||(31614496-31614530)
chr3 (82-134)||(11295022-11295074)
[»] chr1 (10 HSPs)
chr1 (19-218)||(17541307-17541507)
chr1 (28-225)||(33799169-33799367)
chr1 (26-140)||(50818373-50818487)
chr1 (44-141)||(32590670-32590767)
chr1 (46-134)||(51410892-51410980)
chr1 (46-133)||(3854171-3854258)
chr1 (37-132)||(27895321-27895416)
chr1 (17-134)||(4693939-4694056)
chr1 (46-134)||(42913990-42914078)
chr1 (82-134)||(43912961-43913013)
[»] chr7 (15 HSPs)
chr7 (19-223)||(13140937-13141144)
chr7 (19-225)||(13851478-13851687)
chr7 (37-133)||(42266161-42266257)
chr7 (26-140)||(5846223-5846337)
chr7 (38-225)||(12468009-12468201)
chr7 (26-133)||(923857-923964)
chr7 (37-132)||(31599364-31599459)
chr7 (75-133)||(29672987-29673045)
chr7 (83-140)||(37234979-37235036)
chr7 (52-132)||(40752309-40752389)
chr7 (22-132)||(13451214-13451324)
chr7 (59-141)||(21415589-21415671)
chr7 (78-131)||(44799867-44799920)
chr7 (82-134)||(34148514-34148566)
chr7 (82-134)||(34178558-34178610)
[»] chr4 (5 HSPs)
chr4 (27-140)||(1858247-1858360)
chr4 (26-140)||(53101428-53101542)
chr4 (19-140)||(20370043-20370164)
chr4 (37-132)||(16403237-16403332)
chr4 (82-132)||(19145561-19145611)
[»] chr8 (9 HSPs)
chr8 (26-141)||(10699438-10699553)
chr8 (19-134)||(23636723-23636838)
chr8 (44-134)||(30702418-30702508)
chr8 (82-134)||(30288495-30288547)
chr8 (26-135)||(10706021-10706128)
chr8 (44-134)||(18004490-18004580)
chr8 (82-133)||(6654672-6654723)
chr8 (82-133)||(6735074-6735125)
chr8 (54-131)||(6077155-6077232)
[»] chr5 (10 HSPs)
chr5 (27-132)||(375204-375309)
chr5 (42-132)||(23646797-23646887)
chr5 (42-132)||(23811686-23811776)
chr5 (44-132)||(24650174-24650262)
chr5 (40-126)||(19841862-19841948)
chr5 (17-134)||(35246208-35246325)
chr5 (85-134)||(17204797-17204846)
chr5 (44-132)||(11879246-11879334)
chr5 (17-134)||(24233710-24233827)
chr5 (67-131)||(40789749-40789813)
[»] chr6 (7 HSPs)
chr6 (22-134)||(15473029-15473141)
chr6 (22-134)||(15170290-15170402)
chr6 (22-134)||(15179062-15179174)
chr6 (44-132)||(15160280-15160368)
chr6 (31-117)||(3024951-3025037)
chr6 (46-106)||(15183894-15183954)
chr6 (82-134)||(18093568-18093620)
[»] scaffold0011 (1 HSPs)
scaffold0011 (44-132)||(249614-249702)
[»] scaffold0196 (1 HSPs)
scaffold0196 (58-140)||(10153-10235)


Alignment Details
Target: chr2 (Bit Score: 159; Significance: 9e-85; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 19 - 221
Target Start/End: Complemental strand, 24490177 - 24489972
Alignment:
Q  19 catttatcagacaacgtcaaatttttgtctttatcttggctaaaggcaaatatgcccactttcgctttcagttataacgacgggtggcggcatcctttac 118  Q
    ||||||||||||||||||||| |||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||    
T  24490177 catttatcagacaacgtcaaacttttatctttttcttggctaaaggcaaatatacccactttcgctttcagttataacgacggatggcgacatcctttac 24490078  T
Q  119 tttgtatgggtgttattgtgtaactttatttctgtcatttttccgttgtgttactttttggcatcagacac--aactttgtattttgatgggt-ggttct 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||  |||||||||||||||||||| ||||||    
T  24490077 tttgtatgggtgttattgtgtaactttatttctgtcatttttccgttgtgttactctttggcatcagacacataactttgtattttgatgggtgggttct 24489978  T
Q  216 cttttg 221  Q
    ||||||    
T  24489977 cttttg 24489972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 19 - 149
Target Start/End: Original strand, 32116364 - 32116494
Alignment:
Q  19 catttatcagacaacgtcaaatttttgtctttatcttggctaaaggcaaatatgcccactttcgctttcagttataacgacgggtggcggcatcctttac 118  Q
    |||||| |||||||||||||| || ||||||| |||||||||| |||||||||||| |||||| |||||||||| |||||| |||||||||| ||||||     
T  32116364 catttaacagacaacgtcaaacttgtgtctttttcttggctaatggcaaatatgcctactttcactttcagttacaacgactggtggcggcaccctttat 32116463  T
Q  119 tttgtatgggtgttattgtgtaactttattt 149  Q
      |||||||||||| |  |||| ||||||||    
T  32116464 cgtgtatgggtgttctactgtagctttattt 32116494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 29 - 176
Target Start/End: Complemental strand, 9677763 - 9677616
Alignment:
Q  29 acaacgtcaaatttttgtctttatcttggctaaaggcaaatatgcccactttcgctttcagttataacgacgggtggcggcatcctttactttgtatggg 128  Q
    ||||| ||||| || |||||||||||||| ||||  | || |||| |||||||||||||||||||||| || ||||||||||||| |||  |||||||||    
T  9677763 acaacatcaaacttatgtctttatcttggataaaaactaaaatgctcactttcgctttcagttataacaactggtggcggcatcccttaagttgtatggg 9677664  T
Q  129 tgttattgtgtaactttatttctgtcatttttccgttgtgttactttt 176  Q
    | || |||| |||| || ||||||||||| |||| |||||||| ||||    
T  9677663 tatttttgtataacattttttctgtcattcttccattgtgttattttt 9677616  T

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Target: chr2; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 46 - 134
Target Start/End: Complemental strand, 28920401 - 28920313
Alignment:
Q  46 tctttatcttggctaaaggcaaatatgcccactttcgctttcagttataacgacgggtggcggcatcctttactttgtatgggtgttat 134  Q
    ||||| |||||||||||||| |||| ||  |||| ||||||||||||||| ||| |||||||||| |||||||||||||||||||||||    
T  28920401 tctttttcttggctaaaggctaatacgctaacttccgctttcagttataatgactggtggcggcaccctttactttgtatgggtgttat 28920313  T

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Target: chr2; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 26 - 139
Target Start/End: Original strand, 3474600 - 3474715
Alignment:
Q  26 cagacaacgtcaaatttttgtctttatcttggctaaag--gcaaatatgcccactttcgctttcagttataacgacgggtggcggcatcctttactttgt 123  Q
    |||||||| ||||| |||||||||| |||||| |||||  || |||||| | ||||||||||| |||||||| ||| ||||||||||||| ||  |||||    
T  3474600 cagacaacatcaaacttttgtctttttcttggttaaagaggccaatatgactactttcgcttttagttataatgaccggtggcggcatccgttgatttgt 3474699  T
Q  124 atgggtgttattgtgt 139  Q
    ||| ||||| ||||||    
T  3474700 atgcgtgttcttgtgt 3474715  T

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Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 27 - 132
Target Start/End: Complemental strand, 10235095 - 10234990
Alignment:
Q  27 agacaacgtcaaatttttgtctttatcttggctaaaggcaaatatgcccactttcgctttcagttataacgacgggtggcggcatcctttactttgtatg 126  Q
    ||||||| | |||||| ||||||  ||||||||||||||||||||| | |||||||| |||||||| || ||| ||||||| || ||||||| ||| |||    
T  10235095 agacaacataaaatttatgtcttattcttggctaaaggcaaatatgtctactttcgccttcagttacaatgactggtggcgacaccctttaccttgcatg 10234996  T
Q  127 ggtgtt 132  Q
     |||||    
T  10234995 tgtgtt 10234990  T

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Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 37 - 140
Target Start/End: Complemental strand, 38085237 - 38085134
Alignment:
Q  37 aaatttttgtctttatcttggctaaaggcaaatatgcccactttcgctttcagttataacgacgggtggcggcatcctttactttgtatgggtgttattg 136  Q
    |||||| ||||||| |||||||||||||| || ||| | || || || ||| |||| |||||| ||||||||||||||||||  | |||||||||||| |    
T  38085237 aaatttatgtctttttcttggctaaaggctaacatgtctacctttgccttccgttacaacgaccggtggcggcatcctttaccatatatgggtgttatag 38085138  T
Q  137 tgta 140  Q
    ||||    
T  38085137 tgta 38085134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 28 - 134
Target Start/End: Original strand, 35431339 - 35431445
Alignment:
Q  28 gacaacgtcaaatttttgtctttatcttggctaaaggcaaatatgcccactttcgctttcagttataacgacgggtggcggcatcctttactttgtatgg 127  Q
    ||||| || |||||| |||| || |||||| |||| || |||| ||  ||||  |||||||||||||| ||| |||||||||| |||||| |||||||||    
T  35431339 gacaatgtaaaatttgtgtcattttcttggttaaatgctaataggctaacttcagctttcagttataatgactggtggcggcaccctttaatttgtatgg 35431438  T
Q  128 gtgttat 134  Q
    |||||||    
T  35431439 gtgttat 35431445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 132
Target Start/End: Original strand, 22726915 - 22727010
Alignment:
Q  37 aaatttttgtctttatcttggctaaaggcaaatatgcccactttcgctttcagttataacgacgggtggcggcatcctttactttgtatgggtgtt 132  Q
    |||||| | ||||| ||||||||| ||| ||||||||| |||||| | |||||||| || ||| ||||| | || ||||||| |||||||||||||    
T  22726915 aaatttatatctttttcttggctacaggaaaatatgcctactttctccttcagttacaatgaccggtggtgtcaccctttaccttgtatgggtgtt 22727010  T

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Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 119
Target Start/End: Original strand, 23249908 - 23250005
Alignment:
Q  22 ttatcagacaacgtcaaatttttgtctttatcttggctaaaggcaaatatgcccactttcgctttcagttataacgacgggtggcggcatcctttact 119  Q
    |||| |||||| || || ||| ||||||| |||||| |||| || |||||||  |||| ||||||||||||||| ||| |||||||| | ||||||||    
T  23249908 ttattagacaatgtaaagtttatgtctttttcttggttaaaagctaatatgctaacttccgctttcagttataatgactggtggcggaaccctttact 23250005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 140
Target Start/End: Complemental strand, 21564613 - 21564501
Alignment:
Q  28 gacaacgtcaaatttttgtctttatcttggctaaaggcaaatatgcccactttcgctttcagttataacgacgggtggcggcatcctttactttgtatgg 127  Q
    ||||| ||||| ||||||||||| |  ||||| ||||| ||||||| ||| || |||||||||||| | ||| |||| || || ||||| | |||||||     
T  21564613 gacaaggtcaagtttttgtcttttttatggcttaaggccaatatgcacacctttgctttcagttatcatgaccggtgccgacaccctttccattgtatgc 21564514  T
Q  128 gtgttattgtgta 140  Q
    ||||||| |||||    
T  21564513 gtgttatggtgta 21564501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 134; Significance: 7e-70; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 27 - 225
Target Start/End: Complemental strand, 22757570 - 22757370
Alignment:
Q  27 agacaacgtcaaatttttgtctttatcttggctaaaggcaaatatgcccactttcgctttcagttataacgacgggtggcggcatcctttactttgtatg 126  Q
    |||||||||||||||| ||||||| ||||||||||||||||||||| | |||||||| |||| ||||||| || |||||||||||||||||| |||||||    
T  22757570 agacaacgtcaaatttatgtctttttcttggctaaaggcaaatatgtctactttcgccttcacttataacaactggtggcggcatcctttacattgtatg 22757471  T
Q  127 ggtgttattgtgtaactttatttctgtcatttttccgttgtgttactttttggcatcagacac--aactttgtattttgatgggtggttctcttttgcac 224  Q
     ||||||||||||| |||||||||||||||| ||||||||||||| |||||||||||||||||  |||||||||||||| ||||||||||||||||||||    
T  22757470 agtgttattgtgtagctttatttctgtcattcttccgttgtgttattttttggcatcagacacataactttgtattttggtgggtggttctcttttgcac 22757371  T
Q  225 a 225  Q
    |    
T  22757370 a 22757370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 19 - 224
Target Start/End: Complemental strand, 37510127 - 37509920
Alignment:
Q  19 catttatcagacaacgtcaaatttttgtctttatcttggctaaaggcaaatatgcccactttcgctttcagttataacgacgggtggcggcatcctttac 118  Q
    |||||| |||| || ||||||||| ||||||| |||||||||||| |||||||| |||||||||| |||  ||| | | || ||||||||||  || |||    
T  37510127 catttagcagataatgtcaaatttctgtctttttcttggctaaagacaaatatgtccactttcgccttcgattacaccaactggtggcggcactctctac 37510028  T
Q  119 tttgtatgggtgttattgtgta-actttatttctgtcatttttccgttgtgttactttttggcatcagacac-aactttgtattttgatgggtggttctc 216  Q
    | |||||| |||||||||||||   ||| |||| |||||| ||  ||||||||| ||||||||||||||||| ||||||| || ||| ||| ||||||||    
T  37510027 tgtgtatgagtgttattgtgtagtttttttttccgtcattcttatgttgtgttattttttggcatcagacactaactttgcatcttgttggatggttctc 37509928  T
Q  217 ttttgcac 224  Q
    ||||||||    
T  37509927 ttttgcac 37509920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 26 - 225
Target Start/End: Original strand, 13496762 - 13496963
Alignment:
Q  26 cagacaacgtcaaatttttgtctttatcttggctaaaggcaaatatgcccactttcgctttcagttataacgacgggtggcggcatcctttactttgtat 125  Q
    ||||||||||||| | | ||||||| |  |||||||||   ||||||| | ||||| |||||| | |||| |||||||||||||| ||||||| ||| ||    
T  13496762 cagacaacgtcaagtgtatgtctttcttatggctaaagctcaatatgctctctttctctttcaataataatgacgggtggcggcaccctttacattgcat 13496861  T
Q  126 gggtgttattgtgtaactttatttctgtcatttttccgttgtgttactttttggcatcagacac--aactttgtattttgatgggtggttctcttttgca 223  Q
    |||| ||||  |||| |||| ||| ||| ||| || ||| |||||  ||| |||||||||||||  ||| |||||||||| || ||||||||||| ||||    
T  13496862 gggtattatgttgtagctttctttttgttattctttcgtagtgtttttttatggcatcagacacttaacattgtattttgttgagtggttctcttctgca 13496961  T
Q  224 ca 225  Q
    ||    
T  13496962 ca 13496963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 37 - 129
Target Start/End: Complemental strand, 28033777 - 28033685
Alignment:
Q  37 aaatttttgtctttatcttggctaaaggcaaatatgcccactttcgctttcagttataacgacgggtggcggcatcctttactttgtatgggt 129  Q
    |||||||||||||| |||||||| ||||| ||||||| ||||| ||||||||||||||| ||| | |||||| | || ||| |||||||||||    
T  28033777 aaatttttgtctttctcttggctgaaggctaatatgctcacttccgctttcagttataatgactgatggcggtaccccttaatttgtatgggt 28033685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 37 - 145
Target Start/End: Complemental strand, 33856210 - 33856102
Alignment:
Q  37 aaatttttgtctttatcttggctaaaggcaaatatgcccactttcgctttcagttataacgacgggtggcggcatcctttactttgtatgggtgttattg 136  Q
    |||||| ||||||| |||||||| ||||| ||| || | || ||||| |||| ||| |||||| ||||||| || ||||||| ||||||||||||||| |    
T  33856210 aaatttctgtctttttcttggcttaaggctaatttgtctaccttcgccttcaattacaacgactggtggcgacaccctttaccttgtatgggtgttatag 33856111  T
Q  137 tgtaacttt 145  Q
    |||||||||    
T  33856110 tgtaacttt 33856102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 44 - 132
Target Start/End: Complemental strand, 41736699 - 41736611
Alignment:
Q  44 tgtctttatcttggctaaaggcaaatatgcccactttcgctttcagttataacgacgggtggcggcatcctttactttgtatgggtgtt 132  Q
    ||||||| ||||||||||||||||| | ||| |||| |||||| |||||  ||||| |||||||||||||||||| ||||||| |||||    
T  41736699 tgtctttttcttggctaaaggcaaacaagcctacttacgcttttagttaccacgactggtggcggcatcctttaccttgtatgagtgtt 41736611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 26 - 139
Target Start/End: Original strand, 30828933 - 30829046
Alignment:
Q  26 cagacaacgtcaaatttttgtctttatcttggctaaaggcaaatatgcccactttcgctttcagttataacgacgggtggcggcatcctttactttgtat 125  Q
    |||||||| | ||| |||||||||| |||||| ||||||| || ||| | |||||||||||||||||||| ||| ||||||| ||||| ||   ||||||    
T  30828933 cagacaacattaaacttttgtctttttcttggttaaaggccaaaatgactactttcgctttcagttataatgactggtggcgacatccgttgacttgtat 30829032  T
Q  126 gggtgttattgtgt 139  Q
    | ||||| ||||||    
T  30829033 gagtgtttttgtgt 30829046  T

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Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 132
Target Start/End: Original strand, 4995249 - 4995354
Alignment:
Q  27 agacaacgtcaaatttttgtctttatcttggctaaaggcaaatatgcccactttcgctttcagttataacgacgggtggcggcatcctttactttgtatg 126  Q
    ||||||| | |||||| ||||||  ||||||||||||||||||||| | ||||| || |||||||| || ||| ||||| | || ||| ||| ||| |||    
T  4995249 agacaacataaaatttatgtcttattcttggctaaaggcaaatatgtctacttttgccttcagttacaatgaccggtggtgacaccctctaccttgcatg 4995348  T
Q  127 ggtgtt 132  Q
    ||||||    
T  4995349 ggtgtt 4995354  T

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Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 134
Target Start/End: Original strand, 54264839 - 54264926
Alignment:
Q  46 tctttatcttggctaaaggcaaatatgcccactttcgctttcagttataacgacgggtggcggcatcctttactttgtatgggtgttat 134  Q
    ||||| |||||||||||| | |||| |   |||| |||||||| |||||| |||||||||||||| || ||| ||||||||||||||||    
T  54264839 tctttttcttggctaaagactaataggttaacttccgctttcaattataatgacgggtggcggca-cccttattttgtatgggtgttat 54264926  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 224
Target Start/End: Complemental strand, 31614530 - 31614496
Alignment:
Q  190 aactttgtattttgatgggtggttctcttttgcac 224  Q
    |||||||||||||| ||||||||||||||||||||    
T  31614530 aactttgtattttggtgggtggttctcttttgcac 31614496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 134
Target Start/End: Original strand, 11295022 - 11295074
Alignment:
Q  82 gctttcagttataacgacgggtggcggcatcctttactttgtatgggtgttat 134  Q
    |||||||||||||  ||  ||||||||||||||||| ||||||||| ||||||    
T  11295022 gctttcagttatagtgattggtggcggcatcctttaatttgtatggatgttat 11295074  T

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Target: chr1 (Bit Score: 95; Significance: 1e-46; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 19 - 218
Target Start/End: Original strand, 17541307 - 17541507
Alignment:
Q  19 catttatcagacaacgtcaaatttttgtctttatcttggctaaaggcaaatatgcccactttcgctttcagttataacgacgggtggcggcatcctttac 118  Q
    |||||| ||| |||||||||| || ||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||| ||||||||||    
T  17541307 catttagcaggcaacgtcaaacttatgtctttttcttggctaaaggcaaatatgcccactttcgcttttagttataatgactggtggcgacatcctttac 17541406  T
Q  119 tttgtatgggtgttattgtgtaactttatttctgtcatttttccgttgtgttactttttggcatcagacac--aactttgtattttgatgggtggttctc 216  Q
    |||||| ||||| | ||||||| |||||||| |||||| |||  ||  ||||| |||||| ||||||||||  | |||||||||||| ||||||||||||    
T  17541407 tttgtaagggtggttttgtgtagctttatttatgtcatcttt-tgtaatgttattttttgacatcagacacttatctttgtattttggtgggtggttctc 17541505  T
Q  217 tt 218  Q
    ||    
T  17541506 tt 17541507  T

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Target: chr1; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 28 - 225
Target Start/End: Complemental strand, 33799367 - 33799169
Alignment:
Q  28 gacaacgtcaaatttttgtctttatcttggctaaaggcaaatatgcccactttcgctttcagttataacgacgggtggcggcatcctttactttgtatgg 127  Q
    ||||||||||||||| | ||||| |||||  ||||||||||||| | ||||||||| |||| |||||||||| || |||  || |||||||  || ||||    
T  33799367 gacaacgtcaaatttatatctttttcttgaataaaggcaaatatactcactttcgccttcaattataacgactggcggcaacaccctttaccctgcatgg 33799268  T
Q  128 gtgttattgtgtaacttta-tttctgtcatttttccgttgtgttactttttggcatcaga--cacaactttgtattttgatgggtggttctcttttgcac 224  Q
    ||||||||  ||||||||| |||||||| || ||||||  ||||| ||||||||||||||  || ||||||| |||||||||||||||||||||||||||    
T  33799267 gtgttattaagtaactttattttctgtctttcttccgt--tgttattttttggcatcagactcataactttgcattttgatgggtggttctcttttgcac 33799170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 26 - 140
Target Start/End: Original strand, 50818373 - 50818487
Alignment:
Q  26 cagacaacgtcaaatttttgtctttatcttggctaaaggcaaatatgcccactttcgctttcagttataacgacgggtggcggcatcctttactttgtat 125  Q
    |||||||| ||||| |||| ||||| ||||| |||||||  || ||||| ||| |||||||||||||||| ||| |||| |||||| | ||  |||||||    
T  50818373 cagacaacatcaaacttttatctttttcttgactaaaggtcaaaatgcctactatcgctttcagttataatgactggtgacggcatgcgttgatttgtat 50818472  T
Q  126 gggtgttattgtgta 140  Q
    |||||||||||||||    
T  50818473 gggtgttattgtgta 50818487  T

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Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 44 - 141
Target Start/End: Complemental strand, 32590767 - 32590670
Alignment:
Q  44 tgtctttatcttggctaaaggcaaatatgcccactttcgctttcagttataacgacgggtggcggcatcctttactttgtatgggtgttattgtgtaa 141  Q
    |||||||  ||||| ||||||| |||| ||  |||| ||||||||||||||| ||| ||||| |||| |||||| |||||||||||||||| ||||||    
T  32590767 tgtcttttacttggttaaaggctaataggctaacttccgctttcagttataatgaccggtggtggcaccctttaatttgtatgggtgttatggtgtaa 32590670  T

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Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 46 - 134
Target Start/End: Original strand, 51410892 - 51410980
Alignment:
Q  46 tctttatcttggctaaaggcaaatatgcccactttcgctttcagttataacgacgggtggcggcatcctttactttgtatgggtgttat 134  Q
    ||||| |||||||||||||| |||| ||  ||||  |||||||||||||| ||| |||||||| | ||||||  |||||||||||||||    
T  51410892 tctttttcttggctaaaggctaataggctaacttcagctttcagttataatgactggtggcggaaccctttaacttgtatgggtgttat 51410980  T

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Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 133
Target Start/End: Complemental strand, 3854258 - 3854171
Alignment:
Q  46 tctttatcttggctaaaggcaaatatgcccactttcgctttcagttataacgacgggtggcggcatcctttactttgtatgggtgtta 133  Q
    ||||| |||||| ||| ||| |||| || |||||  |||||||||||||| ||| ||||||| || |||||| |||||||||||||||    
T  3854258 tctttttcttggttaagggcgaataagctcacttcagctttcagttataatgactggtggcgacaccctttaatttgtatgggtgtta 3854171  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 132
Target Start/End: Original strand, 27895321 - 27895416
Alignment:
Q  37 aaatttttgtctttatcttggctaaaggcaaatatgcccactttcgctttcagttataacgacgggtggcggcatcctttactttgtatgggtgtt 132  Q
    |||||| ||||||| ||||||||||||||| ||| ||  |||| ||| ||||||||| | ||| ||||||||||   |||||  ||||||||||||    
T  27895321 aaatttatgtctttttcttggctaaaggcatataagcttacttacgccttcagttatcatgactggtggcggcacaatttaccgtgtatgggtgtt 27895416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 134
Target Start/End: Original strand, 4693939 - 4694056
Alignment:
Q  17 cacatttatcagacaacgtcaaatttttgtctttatcttggctaaaggcaaatatgcccactttcgctttcagttataacgacgggtggcggcatccttt 116  Q
    |||| |||| ||||| ||| || ||| | ||||| |||||||||||||| |||| ||  ||||  |||||||||||||| ||  ||||||| || |||||    
T  4693939 cacaattattagacatcgtaaagtttgtttctttttcttggctaaaggctaataggctaacttcagctttcagttataatgaatggtggcgacacccttt 4694038  T
Q  117 actttgtatgggtgttat 134  Q
    |  ||||||| |||||||    
T  4694039 aacttgtatgtgtgttat 4694056  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 134
Target Start/End: Original strand, 42913990 - 42914078
Alignment:
Q  46 tctttatcttggctaaaggcaaatatgcccactttcgctttcagttataacgacgggtggcggcatcctttactttgtatgggtgttat 134  Q
    ||||| ||||||||||||||  ||||||  | ||  |||||||| ||||| ||| |||||||||| ||||||  |||||||| ||||||    
T  42913990 tctttttcttggctaaaggcgcatatgctgatttcagctttcagctataatgactggtggcggcaccctttaacttgtatggatgttat 42914078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 134
Target Start/End: Complemental strand, 43913013 - 43912961
Alignment:
Q  82 gctttcagttataacgacgggtggcggcatcctttactttgtatgggtgttat 134  Q
    |||||||||||||  ||| |||||||||| ||||||  |||||||||||||||    
T  43913013 gctttcagttatactgactggtggcggcaccctttaacttgtatgggtgttat 43912961  T

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Target: chr7 (Bit Score: 93; Significance: 2e-45; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 19 - 223
Target Start/End: Original strand, 13140937 - 13141144
Alignment:
Q  19 catttatcagacaacgtcaaatttttgtctttatcttggctaaaggcaaatatgcccactttcgctttcagttataacgacgggtggcggcatcctttac 118  Q
    |||||| ||||||||||||||||| ||||||| ||||||||||| ||||||||||| |||||| | |||| ||| |||||  ||||||| || |||||||    
T  13140937 catttagcagacaacgtcaaatttatgtctttttcttggctaaaagcaaatatgcctactttctccttcaattacaacgaatggtggcgacaccctttac 13141036  T
Q  119 tttgtatgggtgttattgtgtaacttta-tttctgtcatttttccgttgtgttactttttggcatcaga--cacaactttgtattttgatgggtggttct 215  Q
     ||||||| |||||||| |||||||||| ||||||||||| ||||  ||||||| ||||||| ||||||  || |||||||| ||||| |||||||||||    
T  13141037 cttgtatgagtgttattatgtaactttattttctgtcattcttccagtgtgttattttttggtatcagactcataactttgttttttggtgggtggttct 13141136  T
Q  216 cttttgca 223  Q
    ||||||||    
T  13141137 cttttgca 13141144  T

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Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 19 - 225
Target Start/End: Original strand, 13851478 - 13851687
Alignment:
Q  19 catttatcagacaacgtcaaatttttgtctttatcttggctaaaggcaaatatgcccactttcgctttcagttataacgacgggtggcggcatcctttac 118  Q
    |||||| |||||||||| |||||| ||||||| |||||||||||||||||||| || |||||||| |||| ||| |||||| | |||||||| || ||||    
T  13851478 catttagcagacaacgttaaatttatgtctttttcttggctaaaggcaaatatacctactttcgccttcacttacaacgactgttggcggcacccattac 13851577  T
Q  119 tttgtatgggtgttattgtgtaactttatttct-gtcatttttccgttgtgttactttttggcatcagacac--aactttgtattttgatgggtggttct 215  Q
     |||||||||||||||| |||| |||||||| | |||||| || || ||||||  ||  ||||| ||||| |  |||||||||||||| |  ||||||||    
T  13851578 cttgtatgggtgttattatgtacctttattttttgtcattcttacggtgtgttttttggtggcaccagactcttaactttgtattttggtatgtggttct 13851677  T
Q  216 cttttgcaca 225  Q
    ||||||||||    
T  13851678 cttttgcaca 13851687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 37 - 133
Target Start/End: Complemental strand, 42266257 - 42266161
Alignment:
Q  37 aaatttttgtctttatcttggctaaaggcaaatatgcccactttcgctttcagttataacgacgggtggcggcatcctttactttgtatgggtgtta 133  Q
    |||||| ||||||| |  ||| |||| || ||||||||||||| ||||||||||||||||||| |||||||||| ||||||||||||||||||||||    
T  42266257 aaatttatgtcttttttatggttaaaagctaatatgcccacttccgctttcagttataacgaccggtggcggcaccctttactttgtatgggtgtta 42266161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 26 - 140
Target Start/End: Complemental strand, 5846337 - 5846223
Alignment:
Q  26 cagacaacgtcaaatttttgtctttatcttggctaaaggcaaatatgcccactttcgctttcagttataacgacgggtggcggcatcctttactttgtat 125  Q
    |||||||| ||||| || ||||||| |||||||||||||| || ||||| |||||  ||||||||||||||||| ||||||| ||||| ||  |||||||    
T  5846337 cagacaacatcaaacttatgtctttttcttggctaaaggccaaaatgcctactttacctttcagttataacgactggtggcgacatccgttgatttgtat 5846238  T
Q  126 gggtgttattgtgta 140  Q
    | ||||| |||||||    
T  5846237 gagtgtttttgtgta 5846223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 38 - 225
Target Start/End: Original strand, 12468009 - 12468201
Alignment:
Q  38 aatttttgtctttatcttggctaaaggcaaatatgcccactttcgctttcagttataacgacgggtggcggcatcctttactttgtatgggtgttattgt 137  Q
    ||||||||||||| |||||| |||||||  ||||| | || || || |||||||  |||||| |||||||||| ||||||| || ||||||||||||| |    
T  12468009 aatttttgtctttttcttggataaaggcggatatgtctacctttgccttcagtttaaacgactggtggcggcaccctttaccttctatgggtgttattat 12468108  T
Q  138 gtaacttta-tttctgtcatttttccgttgtgttactttttggcatcagac--acaactttg--tattttgatgggtggttctcttttgcaca 225  Q
    |||  |||| |||||||| || || || ||||||  | ||||||| |||||  | |||| ||  | ||||| |||||||||||||||||||||    
T  12468109 gtagatttattttctgtctttattacggtgtgtttttctttggcaccagacttataactctgtttgttttggtgggtggttctcttttgcaca 12468201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 133
Target Start/End: Original strand, 923857 - 923964
Alignment:
Q  26 cagacaacgtcaaatttttgtctttatcttggctaaaggcaaatatgcccactttcgctttcagttataacgacgggtggcggcatcctttactttgtat 125  Q
    ||||||| ||||| | | ||||||| |  ||| ||||||| ||||||| ||| ||||||||||||||||| ||| |||||||||| | ||||| ||| ||    
T  923857 cagacaatgtcaattgtatgtcttttttatggataaaggccaatatgctcacattcgctttcagttataatgaccggtggcggcaccttttacgttgcat 923956  T
Q  126 gggtgtta 133  Q
    | ||||||    
T  923957 gagtgtta 923964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 132
Target Start/End: Complemental strand, 31599459 - 31599364
Alignment:
Q  37 aaatttttgtctttatcttggctaaaggcaaatatgcccactttcgctttcagttataacgacgggtggcggcatcctttactttgtatgggtgtt 132  Q
    ||||| |||||||| |||||| |||||||||| | ||| ||||  ||||| |||||  ||||| |||||||||| | ||||| |||||||||||||    
T  31599459 aaattgttgtctttttcttggttaaaggcaaacaagcctacttatgcttttagttaccacgaccggtggcggcaccatttaccttgtatgggtgtt 31599364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 75 - 133
Target Start/End: Original strand, 29672987 - 29673045
Alignment:
Q  75 cactttcgctttcagttataacgacgggtggcggcatcctttactttgtatgggtgtta 133  Q
    ||||| |||||||||||||||| || |||||||||| |||||||| |||| ||||||||    
T  29672987 cacttccgctttcagttataacaaccggtggcggcaacctttactatgtacgggtgtta 29673045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 140
Target Start/End: Original strand, 37234979 - 37235036
Alignment:
Q  83 ctttcagttataacgacgggtggcggcatcctttactttgtatgggtgttattgtgta 140  Q
    ||||||||||||||||| ||||||||||||| ||  |||||||||||| | |||||||    
T  37234979 ctttcagttataacgactggtggcggcatccgttgatttgtatgggtgcttttgtgta 37235036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 132
Target Start/End: Original strand, 40752309 - 40752389
Alignment:
Q  52 tcttggctaaaggcaaatatgcccactttcgctttcagttataacgacgggtggcggcatcctttactttgtatgggtgtt 132  Q
    |||||| |||||||||| | ||| ||||  ||||| |||||  ||||| |||||||||| ||||||| |||||||||||||    
T  40752309 tcttggttaaaggcaaacaagcctacttatgcttttagttaccacgaccggtggcggcaccctttaccttgtatgggtgtt 40752389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 132
Target Start/End: Original strand, 13451214 - 13451324
Alignment:
Q  22 ttatcagacaacgtcaaatttttgtctttatcttggctaaaggcaaatatgcccactttcgctttcagttataacgacgggtggcggcatcctttacttt 121  Q
    |||| ||||| ||| || ||| ||||||| |||||| |||| || ||  ||| |||||   |||| |||||||| ||| ||||||||||||||||| | |    
T  13451214 ttattagacaccgttaagtttatgtctttttcttggttaaaagctaagttgctcacttctccttttagttataatgactggtggcggcatcctttattat 13451313  T
Q  122 gtatgggtgtt 132  Q
    |||||||||||    
T  13451314 gtatgggtgtt 13451324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 141
Target Start/End: Complemental strand, 21415671 - 21415589
Alignment:
Q  59 taaaggcaaatatgcccactttcgctttcagttataacgacgggtggcggcatcctttactttgtatgggtgttattgtgtaa 141  Q
    ||||||| ||||||| ||||||||  || |||||| | ||| |||||||||| ||||||  ||||||||||||| | ||||||    
T  21415671 taaaggctaatatgctcactttcgtctttagttatcatgactggtggcggcaccctttatcttgtatgggtgttttggtgtaa 21415589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 78 - 131
Target Start/End: Complemental strand, 44799920 - 44799867
Alignment:
Q  78 tttcgctttcagttataacgacgggtggcggcatcctttactttgtatgggtgt 131  Q
    |||||||||||||||||   || ||||||||||||||||| | |||||||||||    
T  44799920 tttcgctttcagttatactcactggtggcggcatcctttattatgtatgggtgt 44799867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 134
Target Start/End: Complemental strand, 34148566 - 34148514
Alignment:
Q  82 gctttcagttataacgacgggtggcggcatcctttactttgtatgggtgttat 134  Q
    |||||||||||||| ||||||||| |||||||  ||  |||||||||||||||    
T  34148566 gctttcagttataatgacgggtgggggcatcccgtaacttgtatgggtgttat 34148514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 134
Target Start/End: Original strand, 34178558 - 34178610
Alignment:
Q  82 gctttcagttataacgacgggtggcggcatcctttactttgtatgggtgttat 134  Q
    |||||||||||||| ||||||||| |||||||  ||  |||||||||||||||    
T  34178558 gctttcagttataatgacgggtgggggcatcccgtaacttgtatgggtgttat 34178610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 27 - 140
Target Start/End: Original strand, 1858247 - 1858360
Alignment:
Q  27 agacaacgtcaaatttttgtctttatcttggctaaaggcaaatatgcccactttcgctttcagttataacgacgggtggcggcatcctttactttgtatg 126  Q
    |||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||| ||||||||||| ||| ||||||||||||| |||||||| |||    
T  1858247 agacaatgtcaaatttttgtctttctcttggctaaaggcaaatgtgcccactttcgccttcagttataatgactggtggcggcatccattactttgcatg 1858346  T
Q  127 ggtgttattgtgta 140  Q
    |||||| |||||||    
T  1858347 ggtgtttttgtgta 1858360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 26 - 140
Target Start/End: Original strand, 53101428 - 53101542
Alignment:
Q  26 cagacaacgtcaaatttttgtctttatcttggctaaaggcaaatatgcccactttcgctttcagttataacgacgggtggcggcatcctttactttgtat 125  Q
    |||||||| ||||| |||| ||||| |||||||||||||| || ||||| ||| |||||||||||||||| ||| ||||||||||||| ||  |||| ||    
T  53101428 cagacaacatcaaacttttatctttttcttggctaaaggccaaaatgcctactatcgctttcagttataatgactggtggcggcatccgttgatttggat 53101527  T
Q  126 gggtgttattgtgta 140  Q
    |||||||||||||||    
T  53101528 gggtgttattgtgta 53101542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 140
Target Start/End: Complemental strand, 20370164 - 20370043
Alignment:
Q  19 catttatcagacaacgtcaaatttttgtctttatcttggctaaaggcaaatatgcccactttcgctttcagttataacgacgggtggcggcatcctttac 118  Q
    |||||| ||||||| ||||| ||| ||||||| |  ||||||||||| ||||||| | |||||||||| |||||| | ||| ||||||  || ||||| |    
T  20370164 catttaacagacaatgtcaagtttatgtctttcttatggctaaaggccaatatgcaccctttcgctttaagttatcatgaccggtggcaacaccctttcc 20370065  T
Q  119 tttgtatgggtgttattgtgta 140  Q
     ||||||||||||||| |||||    
T  20370064 attgtatgggtgttatggtgta 20370043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 132
Target Start/End: Complemental strand, 16403332 - 16403237
Alignment:
Q  37 aaatttttgtctttatcttggctaaaggcaaatatgcccactttcgctttcagttataacgacgggtggcggcatcctttactttgtatgggtgtt 132  Q
    |||||| ||| ||| |||||||||||| || ||  ||| |||| ||| ||||||||| | ||| ||||||||||||||||||  | ||||||||||    
T  16403332 aaatttatgtatttttcttggctaaagacatatcagcctacttacgccttcagttatcatgactggtggcggcatcctttaccgtatatgggtgtt 16403237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 132
Target Start/End: Original strand, 19145561 - 19145611
Alignment:
Q  82 gctttcagttataacgacgggtggcggcatcctttactttgtatgggtgtt 132  Q
    |||||||||||||| ||| |||||||||| |||||| | ||||||||||||    
T  19145561 gctttcagttataatgactggtggcggcaccctttattatgtatgggtgtt 19145611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 1e-18; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 26 - 141
Target Start/End: Complemental strand, 10699553 - 10699438
Alignment:
Q  26 cagacaacgtcaaatttttgtctttatcttggctaaaggcaaatatgcccactttcgctttcagttataacgacgggtggcggcatcctttactttgtat 125  Q
    |||||||| ||||| |||| ||||| |||||||||||||  || ||||| ||| ||||||| |||||||| ||| |||||||  |||| ||  |||||||    
T  10699553 cagacaacatcaaacttttatctttttcttggctaaaggtcaaaatgcctactatcgctttaagttataatgactggtggcgagatccgttgatttgtat 10699454  T
Q  126 gggtgttattgtgtaa 141  Q
    ||||||||||||||||    
T  10699453 gggtgttattgtgtaa 10699438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 19 - 134
Target Start/End: Complemental strand, 23636838 - 23636723
Alignment:
Q  19 catttatcagacaacgtcaaatttttgtctttatcttggctaaaggcaaatatgcccactttcgctttcagttataacgacgggtggcggcatcctttac 118  Q
    ||||||| ||||||| |||||||| ||||||| |  |||||||| |  ||||||| ||||| ||||||||||||||||||| |||||  ||| ||||||     
T  23636838 catttattagacaacatcaaatttatgtcttttttatggctaaaagttaatatgctcacttccgctttcagttataacgactggtggatgcaccctttat 23636739  T
Q  119 tttgtatgggtgttat 134  Q
    | ||||||||||||||    
T  23636738 tatgtatgggtgttat 23636723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 44 - 134
Target Start/End: Complemental strand, 30702508 - 30702418
Alignment:
Q  44 tgtctttatcttggctaaaggcaaatatgcccactttcgctttcagttataacgacgggtggcggcatcctttactttgtatgggtgttat 134  Q
    ||||||| |||||  ||||||| |||| ||  |||| ||||||||||||||| ||| |||||||||| |||||| ||||||||||||||||    
T  30702508 tgtctttttcttgattaaaggctaataggctaacttccgctttcagttataatgactggtggcggcaccctttaatttgtatgggtgttat 30702418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 82 - 134
Target Start/End: Original strand, 30288495 - 30288547
Alignment:
Q  82 gctttcagttataacgacgggtggcggcatcctttactttgtatgggtgttat 134  Q
    |||||||||||||| |||||||||||||| |||||| ||||||||||||||||    
T  30288495 gctttcagttataatgacgggtggcggcaccctttaatttgtatgggtgttat 30288547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 26 - 135
Target Start/End: Complemental strand, 10706128 - 10706021
Alignment:
Q  26 cagacaacgtcaaatttttgtctttatcttggctaaaggcaaatatgcccactttcgctttcagttataacgacgggtggcggcatcctttactttgtat 125  Q
    |||||||| ||||| |||| ||||| |  ||||||||||| || ||||| ||| |||||||||||||||| ||| ||||||| ||||  ||  |||||||    
T  10706128 cagacaacatcaaacttttatcttttt--tggctaaaggccaaaatgcctactatcgctttcagttataatgaccggtggcgacatctgttgatttgtat 10706031  T
Q  126 gggtgttatt 135  Q
    ||||||||||    
T  10706030 gggtgttatt 10706021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 44 - 134
Target Start/End: Complemental strand, 18004580 - 18004490
Alignment:
Q  44 tgtctttatcttggctaaaggcaaatatgcccactttcgctttcagttataacgacgggtggcggcatcctttactttgtatgggtgttat 134  Q
    ||||||| |||||| ||||||| |||| ||  ||||  ||||||| |||||| ||| |||||||||| |||||| ||||||||||||||||    
T  18004580 tgtctttttcttggttaaaggctaataggctaacttcagctttcaattataatgaccggtggcggcaccctttaatttgtatgggtgttat 18004490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 82 - 133
Target Start/End: Original strand, 6654672 - 6654723
Alignment:
Q  82 gctttcagttataacgacgggtggcggcatcctttactttgtatgggtgtta 133  Q
    |||||||||||||| ||| ||||||| ||||| ||| |||||||||||||||    
T  6654672 gctttcagttataatgactggtggcgacatccgttaatttgtatgggtgtta 6654723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 82 - 133
Target Start/End: Original strand, 6735074 - 6735125
Alignment:
Q  82 gctttcagttataacgacgggtggcggcatcctttactttgtatgggtgtta 133  Q
    |||||||||||||| ||| ||||||| ||||| ||| |||||||||||||||    
T  6735074 gctttcagttataatgactggtggcgacatccgttaatttgtatgggtgtta 6735125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 131
Target Start/End: Original strand, 6077155 - 6077232
Alignment:
Q  54 ttggctaaaggcaaatatgcccactttcgctttcagttataacgacgggtggcggcatcctttactttgtatgggtgt 131  Q
    |||||| ||||||||||||||||  || || || |||||||||||| || |||| ||||||||  | |||||||||||    
T  6077155 ttggcttaaggcaaatatgcccaactttgcctttagttataacgactgggggcgacatcctttgttgtgtatgggtgt 6077232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 27 - 132
Target Start/End: Original strand, 375204 - 375309
Alignment:
Q  27 agacaacgtcaaatttttgtctttatcttggctaaaggcaaatatgcccactttcgctttcagttataacgacgggtggcggcatcctttactttgtatg 126  Q
    ||||||| ||||| |||||||||| |||||| ||||||| |||||| | |||||| ||||||||||||| ||| ||||||| ||| | ||  ||||||||    
T  375204 agacaacatcaaacttttgtctttttcttggttaaaggccaatatgactactttcactttcagttataatgactggtggcgacattcattgatttgtatg 375303  T
Q  127 ggtgtt 132  Q
    ||||||    
T  375304 ggtgtt 375309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 42 - 132
Target Start/End: Complemental strand, 23646887 - 23646797
Alignment:
Q  42 tttgtctttatcttggctaaaggcaaatatgcccactttcgctttcagttataacgacgggtggcggcatcctttactttgtatgggtgtt 132  Q
    ||||||||  ||||||||||||||||||||| | |||||||| |||||||| || ||| ||||||| || ||||||| ||| |||||||||    
T  23646887 tttgtcttattcttggctaaaggcaaatatgtctactttcgccttcagttacaatgactggtggcgacaccctttaccttgcatgggtgtt 23646797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 42 - 132
Target Start/End: Original strand, 23811686 - 23811776
Alignment:
Q  42 tttgtctttatcttggctaaaggcaaatatgcccactttcgctttcagttataacgacgggtggcggcatcctttactttgtatgggtgtt 132  Q
    ||||||||  ||||||||||||||||||||| | |||||||| |||||||| || ||| ||||||| || ||||||| ||| |||||||||    
T  23811686 tttgtcttattcttggctaaaggcaaatatgtctactttcgccttcagttacaatgactggtggcgacaccctttaccttgcatgggtgtt 23811776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 44 - 132
Target Start/End: Original strand, 24650174 - 24650262
Alignment:
Q  44 tgtctttatcttggctaaaggcaaatatgcccactttcgctttcagttataacgacgggtggcggcatcctttactttgtatgggtgtt 132  Q
    ||||||| ||||||||||||||||| | ||| ||||  ||||| |||||  ||||| |||||||||| ||||||| |||||||||||||    
T  24650174 tgtctttttcttggctaaaggcaaacaagcctacttatgcttttagttaccacgactggtggcggcaccctttaccttgtatgggtgtt 24650262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 40 - 126
Target Start/End: Complemental strand, 19841948 - 19841862
Alignment:
Q  40 tttttgtctttatcttggctaaaggcaaatatgcccactttcgctttcagttataacgacgggtggcggcatcctttactttgtatg 126  Q
    ||||||||||| || ||| |||| || ||||||| ||||| |  |||||||||||| ||||| |||||||| |||||||||||||||    
T  19841948 tttttgtctttttcatggttaaatgctaatatgctcacttccattttcagttataatgacggatggcggcaccctttactttgtatg 19841862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 134
Target Start/End: Complemental strand, 35246325 - 35246208
Alignment:
Q  17 cacatttatcagacaacgtcaaatttttgtctttatcttggctaaaggcaaatatgcccactttcgctttcagttataacgacgggtggcggcatccttt 116  Q
    |||| |||| |||||| || || ||| | ||||| ||||||||||||||  |||||  |||||  |||||||||||||| ||| |||||||||| |||||    
T  35246325 cacaattattagacaatgtaaagtttgtttctttttcttggctaaaggctcatatgttcacttcagctttcagttataatgactggtggcggcacccttt 35246226  T
Q  117 actttgtatgggtgttat 134  Q
    |  ||||||| |||||||    
T  35246225 aacttgtatgagtgttat 35246208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 85 - 134
Target Start/End: Complemental strand, 17204846 - 17204797
Alignment:
Q  85 ttcagttataacgacgggtggcggcatcctttactttgtatgggtgttat 134  Q
    |||||||||| |||| |||||||||| |||||||| ||||||||||||||    
T  17204846 ttcagttataccgaccggtggcggcaccctttactatgtatgggtgttat 17204797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 132
Target Start/End: Complemental strand, 11879334 - 11879246
Alignment:
Q  44 tgtctttatcttggctaaaggcaaatatgcccactttcgctttcagttataacgacgggtggcggcatcctttactttgtatgggtgtt 132  Q
    ||||||| |||||| |||||||||| | ||| ||||  ||||| |||||  ||||| ||||||||||  |||||| |||||||||||||    
T  11879334 tgtctttttcttggttaaaggcaaacaagcctacttatgcttttagttaccacgactggtggcggcactctttaccttgtatgggtgtt 11879246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 134
Target Start/End: Complemental strand, 24233827 - 24233710
Alignment:
Q  17 cacatttatcagacaacgtcaaatttttgtctttatcttggctaaaggcaaatatgcccactttcgctttcagttataacgacgggtggcggcatccttt 116  Q
    |||| |||| |||||| || || ||| | ||||| ||||||||||||||  ||| |   ||||  |||||||||||||| ||| |||||||||| | |||    
T  24233827 cacaattattagacaatgtaaagtttgtttctttttcttggctaaaggcgcataggttaacttctgctttcagttataatgactggtggcggcaccattt 24233728  T
Q  117 actttgtatgggtgttat 134  Q
    |  |||||||||||||||    
T  24233727 aacttgtatgggtgttat 24233710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 131
Target Start/End: Original strand, 40789749 - 40789813
Alignment:
Q  67 aatatgcccactttcgctttcagttataacgacgggtggcggcatcctttactttgtatgggtgt 131  Q
    |||||||||||||| | |||||||||| | |||||| |||| || ||||||  ||||||||||||    
T  40789749 aatatgcccacttttgttttcagttatcaagacgggcggcgccaccctttagcttgtatgggtgt 40789813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 134
Target Start/End: Original strand, 15473029 - 15473141
Alignment:
Q  22 ttatcagacaacgtcaaatttttgtctttatcttggctaaaggcaaatatgcccactttcgctttcagttataacgacgggtggcggcatcctttacttt 121  Q
    |||| |||||| || || ||| ||||||| |||||| |||| || |||||||  ||||  |||||||||||||| ||| ||| |||||| |||||||| |    
T  15473029 ttattagacaatgtaaagtttatgtctttttcttggttaaaagctaatatgctgacttctgctttcagttataatgactggttgcggcaccctttactat 15473128  T
Q  122 gtatgggtgttat 134  Q
    |||||||||||||    
T  15473129 gtatgggtgttat 15473141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 134
Target Start/End: Complemental strand, 15170402 - 15170290
Alignment:
Q  22 ttatcagacaacgtcaaatttttgtctttatcttggctaaaggcaaatatgcccactttcgctttcagttataacgacgggtggcggcatcctttacttt 121  Q
    |||| |||||| || || ||| ||||||| |||||| |||| || |||||||  |||| ||||||||||||||| ||| || ||||| | |||||||| |    
T  15170402 ttattagacaatgtaaagtttatgtctttttcttggttaaaagctaatatgctgacttccgctttcagttataatgactggaggcggtaccctttactat 15170303  T
Q  122 gtatgggtgttat 134  Q
    ||||| |||||||    
T  15170302 gtatgtgtgttat 15170290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 134
Target Start/End: Complemental strand, 15179174 - 15179062
Alignment:
Q  22 ttatcagacaacgtcaaatttttgtctttatcttggctaaaggcaaatatgcccactttcgctttcagttataacgacgggtggcggcatcctttacttt 121  Q
    |||| |||||| || || ||| ||||||| |||||| |||| || |||||||  |||| ||||||||||||||| ||| || ||||| | |||||||| |    
T  15179174 ttattagacaatgtaaagtttatgtctttttcttggttaaaagctaatatgctgacttccgctttcagttataatgactggaggcggtaccctttactat 15179075  T
Q  122 gtatgggtgttat 134  Q
    ||||| |||||||    
T  15179074 gtatgtgtgttat 15179062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 132
Target Start/End: Complemental strand, 15160368 - 15160280
Alignment:
Q  44 tgtctttatcttggctaaaggcaaatatgcccactttcgctttcagttataacgacgggtggcggcatcctttactttgtatgggtgtt 132  Q
    ||||||| |||||| |||| || || ||||  |||| ||||||||||||||| ||| ||||||||||  ||||||| ||||| ||||||    
T  15160368 tgtctttttcttggttaaaagctaacatgctaacttccgctttcagttataatgactggtggcggcactctttactatgtataggtgtt 15160280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 117
Target Start/End: Complemental strand, 3025037 - 3024951
Alignment:
Q  31 aacgtcaaatttttgtctttatcttggctaaaggcaaatatgcccactttcgctttcagttataacgacgggtggcggcatccttta 117  Q
    ||||| || ||||||||||| |||||| | || || || |||| ||||| ||||||||||||||  ||| |||||||||| ||||||    
T  3025037 aacgttaagtttttgtctttttcttggatgaaagctaaaatgctcacttacgctttcagttatactgaccggtggcggcacccttta 3024951  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 106
Target Start/End: Complemental strand, 15183954 - 15183894
Alignment:
Q  46 tctttatcttggctaaaggcaaatatgcccactttcgctttcagttataacgacgggtggc 106  Q
    ||||| |||||| |||| ||||||||||  |||| ||||||||||||||| ||| ||||||    
T  15183954 tctttttcttggttaaaagcaaatatgctgacttccgctttcagttataatgactggtggc 15183894  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 134
Target Start/End: Original strand, 18093568 - 18093620
Alignment:
Q  82 gctttcagttataacgacgggtggcggcatcctttactttgtatgggtgttat 134  Q
    ||||||||||| || ||| |||||||||| ||||||  |||||||||||||||    
T  18093568 gctttcagttacaatgactggtggcggcaccctttaacttgtatgggtgttat 18093620  T

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Target: scaffold0011 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 132
Target Start/End: Original strand, 249614 - 249702
Alignment:
Q  44 tgtctttatcttggctaaaggcaaatatgcccactttcgctttcagttataacgacgggtggcggcatcctttactttgtatgggtgtt 132  Q
    ||||||| ||||||||||||| ||| | ||| ||||  ||||| |||||  ||||| |||||||||| ||||||| ||||||| |||||    
T  249614 tgtctttttcttggctaaaggaaaacaagcctacttatgcttttagttaccacgactggtggcggcaccctttaccttgtatgagtgtt 249702  T

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Target: scaffold0196 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0196
Description:

Target: scaffold0196; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 140
Target Start/End: Complemental strand, 10235 - 10153
Alignment:
Q  58 ctaaaggcaaatatgcccactttcgctttcagttataacgacgggtggcggcatcctttactttgtatgggtgttattgtgta 140  Q
    |||||||| ||||||| || |||||||||||||||| | ||  |||| |||||  |||| | ||||||||||||||| |||||    
T  10235 ctaaaggccaatatgcacattttcgctttcagttatcatgaacggtgacggcactctttccattgtatgggtgttatggtgta 10153  T

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