View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11559_low_14 (Length: 238)

Name: NF11559_low_14
Description: NF11559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11559_low_14
NF11559_low_14
[»] chr1 (4 HSPs)
chr1 (16-238)||(33159690-33159912)
chr1 (16-236)||(33182534-33182753)
chr1 (16-109)||(33141070-33141163)
chr1 (21-104)||(33286948-33287031)


Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 16 - 238
Target Start/End: Original strand, 33159690 - 33159912
Alignment:
Q  16 ctaatgttgatggaaaaatcccagactttattgagtgtccagattgtcaccgcacaatgcaagtgtatatcagctacaggtgctgccataatggttagca 115  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||    
T  33159690 ctaatgttgatggaaaaatcccagactttattaagtgtccagattgtcaccgcacaatggaagtgtatatcagctacaagtgctgccataatggttagca 33159789  T
Q  116 ttaggtagcttcatgggtttgagcattggcgagctatgtactttgttcgattattgcattttctcttatggtttctttgtggtcagttgtttgagtgtga 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33159790 ttaggtagcttcatgggtttgagcattggcgagctatgtactttgttcgattattgcattttctcttatggtttctttgtggtcagttgtttgagtgtga 33159889  T
Q  216 gattactatcagttttatgtaac 238  Q
    |||||||||||||||||||||||    
T  33159890 gattactatcagttttatgtaac 33159912  T

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Target: chr1; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 16 - 236
Target Start/End: Original strand, 33182534 - 33182753
Alignment:
Q  16 ctaatgttgatggaaaaatcccagactttattgagtgtccagattgtcaccgcacaatgcaagtgtatatcagctacaggtgctgccataatggttagca 115  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||    
T  33182534 ctaatgttgatggaaaaatcccagactttattaagtgtccagattgtcaccgcacaatggaagtgtatatcagctacaagtgctgccataatggttagca 33182633  T
Q  116 ttaggtagcttcatgggtttgagcattggcgagctatgtactttgttcgattattgcattttctcttatggtttctttgtggtcagttgtttgagtgtga 215  Q
    |||||||||||||||||||| ||||||||| || |||||||| |||| |||||||||||||| |||| |   || | |||||||||||||||||||||||    
T  33182634 ttaggtagcttcatgggttttagcattggcaagttatgtactatgtttgattattgcatttt-tcttctaagttttctgtggtcagttgtttgagtgtga 33182732  T
Q  216 gattactatcagttttatgta 236  Q
    ||| |||||||||||||||||    
T  33182733 gatcactatcagttttatgta 33182753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 109
Target Start/End: Original strand, 33141070 - 33141163
Alignment:
Q  16 ctaatgttgatggaaaaatcccagactttattgagtgtccagattgtcaccgcacaatgcaagtgtatatcagctacaggtgctgccataatgg 109  Q
    ||||||||| ||| ||||| ||||| ||||| ||||||||||||||||||||||||||| |||||| ||| ||||||| ||| |||||||||||    
T  33141070 ctaatgttgctgggaaaattccagattttatcgagtgtccagattgtcaccgcacaatggaagtgtttattagctacaagtgttgccataatgg 33141163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 104
Target Start/End: Complemental strand, 33287031 - 33286948
Alignment:
Q  21 gttgatggaaaaatcccagactttattgagtgtccagattgtcaccgcacaatgcaagtgtatatcagctacaggtgctgccat 104  Q
    |||| ||||||||||||||| ||| ||||||||||||||||||  |||| |||| |||||| ||| | ||||| ||| ||||||    
T  33287031 gttgctggaaaaatcccagattttgttgagtgtccagattgtcgtcgcagaatggaagtgtttattacctacaagtgttgccat 33286948  T

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