View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11559_low_15 (Length: 237)

Name: NF11559_low_15
Description: NF11559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11559_low_15
NF11559_low_15
[»] chr6 (25 HSPs)
chr6 (55-185)||(18026765-18026895)
chr6 (69-192)||(24728568-24728689)
chr6 (68-185)||(18172045-18172160)
chr6 (68-192)||(23006068-23006190)
chr6 (68-192)||(23782176-23782298)
chr6 (68-186)||(13145152-13145269)
chr6 (74-194)||(10704567-10704686)
chr6 (68-193)||(24398672-24398795)
chr6 (55-183)||(31127341-31127467)
chr6 (56-209)||(15551973-15552125)
chr6 (74-184)||(26185734-26185842)
chr6 (68-184)||(25930497-25930612)
chr6 (68-192)||(32335835-32335958)
chr6 (71-185)||(16462665-16462777)
chr6 (84-185)||(17445686-17445785)
chr6 (69-184)||(7812034-7812148)
chr6 (62-133)||(25595953-25596024)
chr6 (76-185)||(24718762-24718869)
chr6 (108-192)||(17867579-17867661)
chr6 (108-192)||(17877362-17877444)
chr6 (100-191)||(30451579-30451669)
chr6 (68-136)||(12348165-12348233)
chr6 (68-139)||(21035062-21035133)
chr6 (100-138)||(23231249-23231287)
chr6 (99-139)||(19875900-19875940)
[»] chr4 (14 HSPs)
chr4 (55-230)||(17812263-17812439)
chr4 (55-186)||(18394546-18394678)
chr4 (68-194)||(18774054-18774178)
chr4 (72-191)||(20570985-20571102)
chr4 (53-193)||(2651806-2651944)
chr4 (68-139)||(13027838-13027909)
chr4 (68-136)||(10249877-10249945)
chr4 (53-139)||(14357098-14357184)
chr4 (68-194)||(14902441-14902564)
chr4 (55-191)||(20577293-20577428)
chr4 (72-137)||(16324502-16324567)
chr4 (57-137)||(17526377-17526457)
chr4 (154-184)||(10661230-10661260)
chr4 (154-184)||(10875375-10875405)
[»] chr3 (32 HSPs)
chr3 (55-230)||(27851508-27851692)
chr3 (55-227)||(17762112-17762284)
chr3 (55-227)||(19063432-19063604)
chr3 (68-194)||(22766553-22766678)
chr3 (55-186)||(11078666-11078796)
chr3 (68-191)||(19197900-19198022)
chr3 (55-193)||(315097-315233)
chr3 (55-193)||(16305171-16305308)
chr3 (68-194)||(8729018-8729144)
chr3 (68-194)||(9080905-9081031)
chr3 (55-191)||(13699372-13699506)
chr3 (56-139)||(3087601-3087684)
chr3 (59-191)||(21317405-21317535)
chr3 (68-183)||(16794305-16794418)
chr3 (98-191)||(15647762-15647855)
chr3 (100-184)||(14077405-14077487)
chr3 (68-184)||(17697630-17697745)
chr3 (53-139)||(13653980-13654065)
chr3 (68-139)||(16882353-16882424)
chr3 (90-192)||(4243216-4243315)
chr3 (55-184)||(11513858-11513987)
chr3 (55-138)||(2903197-2903280)
chr3 (53-136)||(20418299-20418382)
chr3 (55-191)||(13931958-13932084)
chr3 (106-191)||(14007585-14007669)
chr3 (69-193)||(14072702-14072825)
chr3 (72-139)||(27374837-27374904)
chr3 (68-182)||(10851832-10851944)
chr3 (57-111)||(18459212-18459266)
chr3 (152-185)||(17769093-17769126)
chr3 (156-228)||(18459263-18459336)
chr3 (152-185)||(19070394-19070427)
[»] scaffold0388 (1 HSPs)
scaffold0388 (55-228)||(5354-5527)
[»] chr2 (17 HSPs)
chr2 (55-230)||(14793953-14794128)
chr2 (55-230)||(19320364-19320547)
chr2 (55-193)||(25918652-25918789)
chr2 (68-185)||(21846164-21846279)
chr2 (68-185)||(24440701-24440815)
chr2 (72-194)||(22383478-22383599)
chr2 (55-196)||(15668509-15668649)
chr2 (72-192)||(24157840-24157960)
chr2 (72-185)||(20568152-20568264)
chr2 (72-182)||(21911046-21911154)
chr2 (55-139)||(19643640-19643726)
chr2 (55-186)||(33705966-33706097)
chr2 (55-137)||(22683493-22683575)
chr2 (72-184)||(10896403-10896514)
chr2 (68-130)||(24844204-24844266)
chr2 (155-186)||(22524887-22524918)
chr2 (154-184)||(24844151-24844181)
[»] chr5 (18 HSPs)
chr5 (64-225)||(17262737-17262899)
chr5 (56-169)||(34637548-34637661)
chr5 (72-193)||(20969207-20969326)
chr5 (53-186)||(27057332-27057463)
chr5 (55-183)||(27276139-27276268)
chr5 (53-191)||(31589006-31589142)
chr5 (55-136)||(20237378-20237459)
chr5 (68-185)||(26119833-26119948)
chr5 (53-194)||(39798875-39799014)
chr5 (66-194)||(34638457-34638583)
chr5 (68-186)||(13692436-13692551)
chr5 (68-192)||(20567813-20567936)
chr5 (68-185)||(23589731-23589846)
chr5 (70-134)||(2152916-2152980)
chr5 (55-139)||(22585996-22586080)
chr5 (154-225)||(24021667-24021740)
chr5 (68-134)||(16607581-16607646)
chr5 (101-181)||(26055578-26055658)
[»] scaffold0498 (1 HSPs)
scaffold0498 (56-186)||(3268-3398)
[»] chr8 (10 HSPs)
chr8 (61-230)||(12541597-12541766)
chr8 (55-191)||(19505450-19505584)
chr8 (68-181)||(18558039-18558150)
chr8 (68-139)||(17916845-17916916)
chr8 (55-129)||(1208634-1208709)
chr8 (53-137)||(12193963-12194047)
chr8 (53-137)||(12438391-12438475)
chr8 (154-225)||(1209865-1209938)
chr8 (155-185)||(17687997-17688027)
chr8 (70-114)||(23772455-23772499)
[»] chr7 (18 HSPs)
chr7 (56-225)||(16105006-16105174)
chr7 (55-184)||(18361593-18361720)
chr7 (69-186)||(15871121-15871237)
chr7 (72-192)||(16307756-16307874)
chr7 (74-191)||(16472694-16472808)
chr7 (53-194)||(18047844-18047983)
chr7 (72-191)||(9064203-9064320)
chr7 (74-185)||(13172382-13172491)
chr7 (55-138)||(11572264-11572347)
chr7 (73-138)||(14114101-14114166)
chr7 (73-138)||(14423751-14423816)
chr7 (68-139)||(5035437-5035508)
chr7 (61-191)||(16412745-16412865)
chr7 (72-184)||(7487934-7488043)
chr7 (68-181)||(16412015-16412128)
chr7 (55-227)||(12222462-12222624)
chr7 (57-138)||(2501080-2501161)
chr7 (121-191)||(25807395-25807465)
[»] scaffold0758 (1 HSPs)
scaffold0758 (55-191)||(4284-4419)
[»] chr1 (16 HSPs)
chr1 (55-193)||(21683124-21683260)
chr1 (72-186)||(26280007-26280119)
chr1 (55-159)||(16478659-16478763)
chr1 (53-194)||(18517099-18517238)
chr1 (68-185)||(23054388-23054503)
chr1 (56-191)||(26703570-26703704)
chr1 (68-192)||(16869977-16870100)
chr1 (58-231)||(8698817-8698991)
chr1 (68-194)||(18129964-18130087)
chr1 (68-183)||(9346778-9346888)
chr1 (74-182)||(20109897-20110003)
chr1 (72-134)||(20909478-20909540)
chr1 (57-137)||(31359378-31359458)
chr1 (59-134)||(2819261-2819336)
chr1 (68-134)||(17018650-17018715)
chr1 (70-114)||(24227929-24227973)
[»] scaffold0092 (1 HSPs)
scaffold0092 (55-191)||(8098-8231)
[»] scaffold0074 (1 HSPs)
scaffold0074 (68-193)||(31637-31760)
[»] scaffold0311 (1 HSPs)
scaffold0311 (68-183)||(20091-20204)
[»] scaffold0772 (1 HSPs)
scaffold0772 (68-185)||(854-969)
[»] scaffold0622 (1 HSPs)
scaffold0622 (72-191)||(3381-3498)
[»] scaffold0683 (1 HSPs)
scaffold0683 (57-170)||(411-523)
[»] scaffold0351 (1 HSPs)
scaffold0351 (49-192)||(9211-9349)
[»] scaffold0002 (1 HSPs)
scaffold0002 (55-192)||(112221-112353)
[»] scaffold0067 (1 HSPs)
scaffold0067 (74-172)||(16400-16498)
[»] scaffold1107 (1 HSPs)
scaffold1107 (73-178)||(2339-2444)
[»] scaffold0043 (1 HSPs)
scaffold0043 (64-192)||(1808-1935)
[»] scaffold0040 (1 HSPs)
scaffold0040 (55-191)||(3983-4117)
[»] scaffold0522 (2 HSPs)
scaffold0522 (72-137)||(4245-4310)
scaffold0522 (72-137)||(11528-11593)
[»] scaffold0490 (1 HSPs)
scaffold0490 (68-137)||(7391-7460)
[»] scaffold0364 (1 HSPs)
scaffold0364 (68-185)||(10380-10495)
[»] scaffold0011 (1 HSPs)
scaffold0011 (72-137)||(59625-59690)
[»] scaffold0003 (3 HSPs)
scaffold0003 (61-191)||(1457-1577)
scaffold0003 (68-181)||(727-840)
scaffold0003 (67-127)||(416023-416083)
[»] scaffold0035 (1 HSPs)
scaffold0035 (68-134)||(29867-29932)
[»] scaffold1026 (1 HSPs)
scaffold1026 (91-182)||(2991-3080)
[»] scaffold0037 (1 HSPs)
scaffold0037 (154-184)||(78419-78449)


Alignment Details
Target: chr6 (Bit Score: 91; Significance: 3e-44; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 55 - 185
Target Start/End: Original strand, 18026765 - 18026895
Alignment:
Q  55 tgaagacacaagtttgcagaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatccacttaaggagtgcaaaga 154  Q
    |||||||  ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |||  |  ||||||    
T  18026765 tgaagactaaagtttgcagaaggagtagaagcctggagcaacaactatttcagaggaattagaaggcattggatgcttatccactgaagatggacaaaga 18026864  T
Q  155 aaggacaatagtacaattgtacaaccactac 185  Q
    |||||||||||||||||||||||||||||||    
T  18026865 aaggacaatagtacaattgtacaaccactac 18026895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 69 - 192
Target Start/End: Original strand, 24728568 - 24728689
Alignment:
Q  69 tgcagaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatccacttaaggagtgcaaagaaaggacaatagtac 168  Q
    |||||||||||| ||| ||||| ||||   ||||||||||||||||||||| ||||||||||||||||||| || |||||||   ||||||| |||||||    
T  24728568 tgcagaaggaatggaaacctagtgcaatggctatttcagaggaattagaaggcattggatgcttatccactgaa-gagtgcaggaaaaggac-atagtac 24728665  T
Q  169 aattgtacaaccactacttcactc 192  Q
    |||||||||||||||||| |||||    
T  24728666 aattgtacaaccactactccactc 24728689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 68 - 185
Target Start/End: Original strand, 18172045 - 18172160
Alignment:
Q  68 ttgcagaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatccacttaaggagtgcaaagaaaggacaatagta 167  Q
    |||||||||| || ||||||||||||||| |||||||||||||||||||||||||||  ||||||||||| || | || ||||   ||||||| ||||||    
T  18172045 ttgcagaaggtatggaagcctagagcaacgactatttcagaggaattagaagacattaaatgcttatcca-ttgaagactgcaggaaaaggac-atagta 18172142  T
Q  168 caattgtacaaccactac 185  Q
    ||||||||||||||||||    
T  18172143 caattgtacaaccactac 18172160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 68 - 192
Target Start/End: Original strand, 23006068 - 23006190
Alignment:
Q  68 ttgcagaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatccacttaaggagtgcaaagaaaggacaatagta 167  Q
    ||||| |||| || ||||||||||| ||| |||||||||||||||||||||| |||| |||||||||||| || | ||||||||  ||| ||| ||||||    
T  23006068 ttgcaaaaggtatggaagcctagaggaacgactatttcagaggaattagaaggcattagatgcttatcca-ttgaagagtgcaagaaaaagac-atagta 23006165  T
Q  168 caattgtacaaccactacttcactc 192  Q
    ||||||||||||||||||| |||||    
T  23006166 caattgtacaaccactactccactc 23006190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 68 - 192
Target Start/End: Complemental strand, 23782298 - 23782176
Alignment:
Q  68 ttgcagaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatccacttaaggagtgcaaagaaaggacaatagta 167  Q
    ||||| |||| || ||||||||||| ||| |||||||||||||||||||||| |||| |||||||||||| || | ||||||||  ||| ||| ||||||    
T  23782298 ttgcaaaaggtatggaagcctagaggaacgactatttcagaggaattagaaggcattagatgcttatcca-ttgaagagtgcaagaaaaagac-atagta 23782201  T
Q  168 caattgtacaaccactacttcactc 192  Q
    ||||||||||||||||||| |||||    
T  23782200 caattgtacaaccactactccactc 23782176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 68 - 186
Target Start/End: Complemental strand, 13145269 - 13145152
Alignment:
Q  68 ttgcagaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatccacttaaggagtgcaaagaaaggaca-atagt 166  Q
    |||||||||||||||||||||   ||||| ||||||||||| |||||||||| ||||| |||||||||||| ||| ||| | ||  |||||||| |||||    
T  13145269 ttgcagaaggaatagaagcctgatgcaacgactatttcagatgaattagaaggcattgaatgcttatccac-taaagagag-aagaaaaggacatatagt 13145172  T
Q  167 acaattgtacaaccactact 186  Q
    ||||||||||||||||||||    
T  13145171 acaattgtacaaccactact 13145152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 74 - 194
Target Start/End: Original strand, 10704567 - 10704686
Alignment:
Q  74 aaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatccacttaaggagtgca-aagaaaggacaatagtacaatt 172  Q
    ||||||||||||||||||||||| ||||||| | |||||||||||||||||| ||||||||||||  || ||| | |  | ||||| | |||||||||||    
T  10704567 aaggaatagaagcctagagcaacgactattttaaaggaattagaagacattgaatgcttatccaccgaa-gagcgtaggaaaaagggc-atagtacaatt 10704664  T
Q  173 gtacaaccactacttcactctt 194  Q
    |||||||||||||| |||||||    
T  10704665 gtacaaccactactccactctt 10704686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 68 - 193
Target Start/End: Complemental strand, 24398795 - 24398672
Alignment:
Q  68 ttgcagaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatccacttaaggagtgcaaagaaaggacaatagta 167  Q
    |||||||||| |||||||||| ||||||| ||||||| | |||||||||||| |||||||||||||||||| | | ||| |||   ||||||  ||||||    
T  24398795 ttgcagaaggtatagaagcctggagcaacgactattttaaaggaattagaaggcattggatgcttatccac-tgatgagcgcatgaaaagga-tatagta 24398698  T
Q  168 caattgtacaaccactacttcactct 193  Q
    || |||||||||||||||| ||||||    
T  24398697 cagttgtacaaccactactccactct 24398672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 55 - 183
Target Start/End: Original strand, 31127341 - 31127467
Alignment:
Q  55 tgaagacacaagtttgcagaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatccacttaaggagtgcaaaga 154  Q
    |||||||||| | ||||| ||||||||||||||| || ||||   |||||||||||||||| ||| ||||||||||||| ||||| || ||| || | ||    
T  31127341 tgaagacacatgattgcaaaaggaatagaagcctggaacaacgtatatttcagaggaattataaggcattggatgcttaaccactgaa-gagcgc-atga 31127438  T
Q  155 aaggacaatagtacaattgtacaaccact 183  Q
    ||| ||||||||| |||||||||||||||    
T  31127439 aagaacaatagtataattgtacaaccact 31127467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 56 - 209
Target Start/End: Complemental strand, 15552125 - 15551973
Alignment:
Q  56 gaagacacaagtttgcagaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatccacttaaggagtg-caaaga 154  Q
    ||||||| ||||||  |||| |||||||||| | ||||||    |||||||||||||||| ||||||||||||| ||||||||| ||  |  | || |||    
T  15552125 gaagacataagtttttagaaagaatagaagcttggagcaagt--tatttcagaggaattaaaagacattggatgtttatccactgaaaaatggtcagaga 15552028  T
Q  155 aaggacaatagtacaattgtacaaccactacttcactcttgtatgcgcatagtac 209  Q
    ||   ||||||||||||||||||||||||||| ||||| ||| ||||||||||||    
T  15552027 aatcgcaatagtacaattgtacaaccactactccactcatgtctgcgcatagtac 15551973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 74 - 184
Target Start/End: Complemental strand, 26185842 - 26185734
Alignment:
Q  74 aaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatccacttaaggagtgcaaagaaaggacaatagtacaattg 173  Q
    |||||||||||  || || ||||  |||||||||| |||||||||| |||| ||||||||||||| ||| ||||||| | ||||||||||||||| ||||    
T  26185842 aaggaatagaaatctggaacaacggctatttcagatgaattagaaggcattagatgcttatccac-taaagagtgcagaaaaaggacaatagtac-attg 26185745  T
Q  174 tacaaccacta 184  Q
    |||||||||||    
T  26185744 tacaaccacta 26185734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 68 - 184
Target Start/End: Complemental strand, 25930612 - 25930497
Alignment:
Q  68 ttgcagaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatccacttaaggagtgcaaagaaaggacaatagta 167  Q
    ||||||||||||||||||||| |||||||  ||| |||||||||||| |||| |||||||||||||| | ||| | ||| |     |||||| |||||||    
T  25930612 ttgcagaaggaatagaagcctggagcaacggctaattcagaggaatttgaagtcattggatgcttattc-cttgaagagcgttggaaaaggataatagta 25930514  T
Q  168 caattgtacaaccacta 184  Q
    |||||||||||||||||    
T  25930513 caattgtacaaccacta 25930497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 68 - 192
Target Start/End: Complemental strand, 32335958 - 32335835
Alignment:
Q  68 ttgcagaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatccacttaaggagtgcaaagaaaggacaatagta 167  Q
    ||||||||||||| ||||||| ||||||| ||||||||||| ||||| ||||  ||| |||||||||||||| || |||  |    | ||||| ||||||    
T  32335958 ttgcagaaggaatggaagcctggagcaacgactatttcagaagaatttgaagggattagatgcttatccactgaa-gagctctggaataggacgatagta 32335860  T
Q  168 caattgtacaaccactacttcactc 192  Q
    ||||||||||||||||||| |||||    
T  32335859 caattgtacaaccactactccactc 32335835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 71 - 185
Target Start/End: Original strand, 16462665 - 16462777
Alignment:
Q  71 cagaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatccacttaaggagtgcaaagaaaggacaatagtacaa 170  Q
    |||||||||||||||||| ||| |||  |||  ||||||||||| |||| |||||||||||||||||||  | ||| |||   ||||||| |||||||||    
T  16462665 cagaaggaatagaagcctggagaaacggctaaatcagaggaatttgaaggcattggatgcttatccactgga-gagcgcaggaaaaggac-atagtacaa 16462762  T
Q  171 ttgtacaaccactac 185  Q
    |||||||||||||||    
T  16462763 ttgtacaaccactac 16462777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 84 - 185
Target Start/End: Original strand, 17445686 - 17445785
Alignment:
Q  84 agcctagagcaacaactatttcagaggaattagaagacattggatgcttatccacttaaggagtgcaaagaaaggacaatagtacaattgtacaaccact 183  Q
    ||||| ||||||| |||||||||||||||||||||||||||| ||||| |||| || || ||||||||| |||  || ||| ||||||||||||| ||||    
T  17445686 agcctggagcaacgactatttcagaggaattagaagacattgaatgctgatccgctgaa-gagtgcaaaaaaaatac-ataatacaattgtacaatcact 17445783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 69 - 184
Target Start/End: Complemental strand, 7812148 - 7812034
Alignment:
Q  69 tgcagaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatccacttaaggagtgcaaagaaaggacaatagtac 168  Q
    |||||||||||||||||| | ||||||| |||| ||||||||||||  ||| |||||||||||||| |||  || |||    |  |||||||||| ||||    
T  7812148 tgcagaaggaatagaagctttgagcaacgactaattcagaggaatttaaaggcattggatgcttattcaccgaa-gaggattagaaaaggacaatggtac 7812050  T
Q  169 aattgtacaaccacta 184  Q
    ||||||||||||||||    
T  7812049 aattgtacaaccacta 7812034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 62 - 133
Target Start/End: Complemental strand, 25596024 - 25595953
Alignment:
Q  62 acaagtttgcagaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgctta 133  Q
    ||||||||||| |||||||||||| || ||||||| ||||||||| |||||||||||  |||| ||||||||    
T  25596024 acaagtttgcataaggaatagaagtctggagcaacgactatttcaaaggaattagaatgcatttgatgctta 25595953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 76 - 185
Target Start/End: Original strand, 24718762 - 24718869
Alignment:
Q  76 ggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatccacttaaggagtgcaaagaaaggacaatagtacaattgta 175  Q
    ||||| ||||||||| ||| |  |||||||| |  ||||||||| ||||||||||||||||||| || |||||||   ||||||| ||||||||||||||    
T  24718762 ggaatggaagcctagtgcagcggctatttcaaaataattagaaggcattggatgcttatccactgaa-gagtgcaggaaaaggac-atagtacaattgta 24718859  T
Q  176 caaccactac 185  Q
    || |||||||    
T  24718860 cagccactac 24718869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 108 - 192
Target Start/End: Complemental strand, 17867661 - 17867579
Alignment:
Q  108 aggaattagaagacattggatgcttatccacttaaggagtgcaaagaaaggacaatagtacaattgtacaaccactacttcactc 192  Q
    |||||||||||| ||||||||||||||||||| || ||| |||  |||||||| ||||||||||||| |||| |||||| |||||    
T  17867661 aggaattagaaggcattggatgcttatccactgaa-gagcgcagggaaaggac-atagtacaattgtgcaactactactccactc 17867579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 108 - 192
Target Start/End: Complemental strand, 17877444 - 17877362
Alignment:
Q  108 aggaattagaagacattggatgcttatccacttaaggagtgcaaagaaaggacaatagtacaattgtacaaccactacttcactc 192  Q
    |||||||||||| ||||||||||||||||||| || ||| |||  |||||||| ||||||||||||| |||| |||||| |||||    
T  17877444 aggaattagaaggcattggatgcttatccactgaa-gagcgcagggaaaggac-atagtacaattgtgcaactactactccactc 17877362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 191
Target Start/End: Original strand, 30451579 - 30451669
Alignment:
Q  100 tatttcagaggaattagaagacattggatgcttatccacttaaggagtgcaaagaaaggacaatagtacaattgtacaaccactacttcact 191  Q
    ||||||| || |||| |||| ||||||||||||||||||| || ||| ||| | |||| |||||||||||||| |||||||| |||| ||||    
T  30451579 tatttcatagaaatttgaaggcattggatgcttatccactgaa-gagcgcagaaaaagaacaatagtacaattatacaaccagtactccact 30451669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 136
Target Start/End: Complemental strand, 12348233 - 12348165
Alignment:
Q  68 ttgcagaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatcc 136  Q
    ||||| ||||||||||||||| ||||||   ||| |||| ||||||| |||| ||||||||||||||||    
T  12348233 ttgcaaaaggaatagaagcctggagcaatggctaattcataggaatttgaagtcattggatgcttatcc 12348165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 139
Target Start/End: Complemental strand, 21035133 - 21035062
Alignment:
Q  68 ttgcagaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatccact 139  Q
    ||||||||||||| ||||| | ||||||| |||| |||| ||||||| |||  |||||||||||||| ||||    
T  21035133 ttgcagaaggaatggaagcttggagcaacgactaattcataggaatttgaaagcattggatgcttattcact 21035062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 138
Target Start/End: Complemental strand, 23231287 - 23231249
Alignment:
Q  100 tatttcagaggaattagaagacattggatgcttatccac 138  Q
    |||||||||| ||||||||| ||||||||||||||||||    
T  23231287 tatttcagagaaattagaaggcattggatgcttatccac 23231249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 139
Target Start/End: Complemental strand, 19875940 - 19875900
Alignment:
Q  99 ctatttcagaggaattagaagacattggatgcttatccact 139  Q
    ||||||||||||||||| ||| || ||||||||||||||||    
T  19875940 ctatttcagaggaattacaaggcaatggatgcttatccact 19875900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 85; Significance: 1e-40; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 55 - 230
Target Start/End: Original strand, 17812263 - 17812439
Alignment:
Q  55 tgaagacacaagtttgcagaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatccacttaaggagtgcaaaga 154  Q
    ||||||||||| |||||||||| ||||||||  | |||||||  ||||||||||||||||||||| |||||||||||||||| || ||||||  || |||    
T  17812263 tgaagacacaaatttgcagaagaaatagaagtttggagcaacggctatttcagaggaattagaaggcattggatgcttatccgctgaaggagaacagaga 17812362  T
Q  155 aaggacaatagtacaattgtacaaccactacttcactcttgtatgcgcatagtac-tgctacaactgtgtctctgct 230  Q
    ||||||||||||| | |||||||||||||||| |||| |||| ||||||||||||  ||||||  ||||||||||||    
T  17812363 aaggacaatagtaaagttgtacaaccactactccactattgtctgcgcatagtacaagctacagttgtgtctctgct 17812439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 55 - 186
Target Start/End: Complemental strand, 18394678 - 18394546
Alignment:
Q  55 tgaagacacaagtttgcagaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatccacttaaggagtgcaaaga 154  Q
    |||| ||||||||||||| |||||||||||| || ||||||| || ||||||||||||||| ||| |||| || ||||||||||| |||||| ||| |||    
T  18394678 tgaacacacaagtttgcataaggaatagaagtctggagcaacgaccatttcagaggaattataaggcatttgaggcttatccactgaaggagcgcagaga 18394579  T
Q  155 aaggac-aatagtacaattgtacaaccactact 186  Q
    |||||| ||||||||||||||||||||||||||    
T  18394578 aaggacaaatagtacaattgtacaaccactact 18394546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 68 - 194
Target Start/End: Complemental strand, 18774178 - 18774054
Alignment:
Q  68 ttgcagaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatccacttaaggagtgcaaagaaaggacaatagta 167  Q
    |||||||||||||||| ||||||||||||||||||||  ||||||||||||| |||| ||||||||||||||||| ||| || | |||| ||  ||| ||    
T  18774178 ttgcagaaggaatagatgcctagagcaacaactatttaggaggaattagaaggcattagatgcttatccacttaa-gagcgc-aggaaaagaacataata 18774081  T
Q  168 caattgtacaaccactacttcactctt 194  Q
    ||||||||||||||||||| |||||||    
T  18774080 caattgtacaaccactactccactctt 18774054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 72 - 191
Target Start/End: Original strand, 20570985 - 20571102
Alignment:
Q  72 agaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatccacttaaggagtgcaaagaaaggacaatagtacaat 171  Q
    |||||||||||||| || ||||||| |||||||||||||||||||||| |||| |||||||||||||| || |||  || | ||||||| ||||||||||    
T  20570985 agaaggaatagaagtctggagcaacgactatttcagaggaattagaaggcatttgatgcttatccactgaa-gagcacagaaaaaggac-atagtacaat 20571082  T
Q  172 tgtacaaccactacttcact 191  Q
    ||||||||||||||| ||||    
T  20571083 tgtacaaccactactccact 20571102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 53 - 193
Target Start/End: Complemental strand, 2651944 - 2651806
Alignment:
Q  53 tctgaagacacaagtttgcagaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatccacttaaggagtgcaaa 152  Q
    ||||||||||||   ||||| ||||||||||||| | ||| ||| |||||||||||||||||||||| ||||| ||||||||||||| || ||| | |      
T  2651944 tctgaagacacatcattgcaaaaggaatagaagcttggagtaacgactatttcagaggaattagaaggcattgaatgcttatccactgaa-gagcgtagg 2651846  T
Q  153 gaaaggacaatagtacaattgtacaaccactacttcactct 193  Q
     ||||||| ||||||||||||||||||||||||| ||||||    
T  2651845 aaaaggac-atagtacaattgtacaaccactactccactct 2651806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 68 - 139
Target Start/End: Complemental strand, 13027909 - 13027838
Alignment:
Q  68 ttgcagaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatccact 139  Q
    ||||||||||||| ||||||| |||||||  ||||||||||||||||||||| |||||||||||||||||||    
T  13027909 ttgcagaaggaatggaagcctggagcaacggctatttcagaggaattagaaggcattggatgcttatccact 13027838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 68 - 136
Target Start/End: Complemental strand, 10249945 - 10249877
Alignment:
Q  68 ttgcagaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatcc 136  Q
    |||||||||||||||||| ||||||||||||||| || ||||||||| |||| ||||||||||||||||    
T  10249945 ttgcagaaggaatagaagtctagagcaacaactaattaagaggaatttgaagtcattggatgcttatcc 10249877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 53 - 139
Target Start/End: Original strand, 14357098 - 14357184
Alignment:
Q  53 tctgaagacacaagtttgcagaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatccact 139  Q
    ||||||||||||   ||||| ||||||||||||||| ||||||   ||||||||||||||||||||| ||||||||| |||||||||    
T  14357098 tctgaagacacatcattgcaaaaggaatagaagcctggagcaatgtctatttcagaggaattagaaggcattggatggttatccact 14357184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 68 - 194
Target Start/End: Original strand, 14902441 - 14902564
Alignment:
Q  68 ttgcagaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatccacttaaggagtgcaaagaaaggacaatagta 167  Q
    ||||||||||||||||||| | ||||||| ||||||| |||||||||||||| || || |||||| ||||| ||| ||| ||  | ||| ||| ||||||    
T  14902441 ttgcagaaggaatagaagcttggagcaacgactattttagaggaattagaaggcagtgaatgcttctccac-taaagagcgctga-aaatgac-atagta 14902537  T
Q  168 caattgtacaaccactacttcactctt 194  Q
    ||||||||||||||||||| |||||||    
T  14902538 caattgtacaaccactactccactctt 14902564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 55 - 191
Target Start/End: Complemental strand, 20577428 - 20577293
Alignment:
Q  55 tgaagacacaagtttgcagaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatccacttaaggagtgcaaaga 154  Q
    ||||||||||||| |||||||| |||||||||||  |||||   ||||||||||| ||||||||| |||||||| |||||||| | || ||||||    |    
T  20577428 tgaagacacaagtctgcagaagaaatagaagcctgaagcaatggctatttcagagaaattagaaggcattggattcttatccaatgaa-gagtgcggtaa 20577330  T
Q  155 aaggacaatagtacaattgtacaaccactacttcact 191  Q
    | ||  ||||||||||||| |||||||||||| ||||    
T  20577329 atgggaaatagtacaattgcacaaccactactccact 20577293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 72 - 137
Target Start/End: Original strand, 16324502 - 16324567
Alignment:
Q  72 agaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatcca 137  Q
    ||||||| | |||||||  | |||| |||||||||||||||||||||| ||||| |||||||||||    
T  16324502 agaaggatttgaagcctgaaacaacgactatttcagaggaattagaaggcattgtatgcttatcca 16324567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 137
Target Start/End: Original strand, 17526377 - 17526457
Alignment:
Q  57 aagacacaagtttgcagaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatcca 137  Q
    ||||||||| | ||||||||||||||||| ||   | ||||| |||||  || |||||||||| |||||||||||||||||    
T  17526377 aagacacaaatatgcagaaggaatagaagactgatggaacaaatatttttgaagaattagaaggcattggatgcttatcca 17526457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 184
Target Start/End: Original strand, 10661230 - 10661260
Alignment:
Q  154 aaaggacaatagtacaattgtacaaccacta 184  Q
    |||||||||||||||||||||||||||||||    
T  10661230 aaaggacaatagtacaattgtacaaccacta 10661260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 184
Target Start/End: Original strand, 10875375 - 10875405
Alignment:
Q  154 aaaggacaatagtacaattgtacaaccacta 184  Q
    |||||||||||||||||||||||||||||||    
T  10875375 aaaggacaatagtacaattgtacaaccacta 10875405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 84; Significance: 5e-40; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 55 - 230
Target Start/End: Complemental strand, 27851692 - 27851508
Alignment:
Q  55 tgaagacacaagtttgcagaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatccacttaagga-gtgcaaag 153  Q
    ||||||||||||| |||||||||||||||||| | |||||||||||||||||||| | |||||||||||||||||||||||| || ||| | |  || ||    
T  27851692 tgaagacacaagtctgcagaaggaatagaagcatggagcaacaactatttcagagaagttagaagacattggatgcttatccgctgaagaatggacagag 27851593  T
Q  154 aaaggacaatagtacaattgtacaacc--------actacttcactcttgtatgcgcatagtactgctacaactgtgtctctgct 230  Q
    |||||||||||||||||||||||||||        |||||| ||||| || |||||||||||||| |||||||| ||||||||||    
T  27851592 aaaggacaatagtacaattgtacaaccactactctactactccactcatgcatgcgcatagtactactacaactatgtctctgct 27851508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 55 - 227
Target Start/End: Original strand, 17762112 - 17762284
Alignment:
Q  55 tgaagacacaagtttgcagaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatccacttaaggagtgcaaaga 154  Q
    |||||||||||||||| | ||||||||||||| | ||||||| | |||||  ||||||||||||| |||| |||| ||||||| | ||| ||  || |||    
T  17762112 tgaagacacaagtttgtataaggaatagaagcttggagcaacgattattttggaggaattagaaggcatttgatgtttatccagtgaagaaggtcagaga 17762211  T
Q  155 aaggacaatagtacaattgtacaaccactacttcactcttgtatgcgcatagtactgctacaactgtgtctct 227  Q
    ||||||||||||| |||||||||||||||||| |||| |||| |||||||||||||||| ||  |||||||||    
T  17762212 aaggacaatagtaaaattgtacaaccactactccactattgtttgcgcatagtactgctgcagttgtgtctct 17762284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 55 - 227
Target Start/End: Original strand, 19063432 - 19063604
Alignment:
Q  55 tgaagacacaagtttgcagaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatccacttaaggagtgcaaaga 154  Q
    |||||||||||||||| | ||||||||||||| | ||||||| | |||||  ||||||||||||| |||| |||| ||||||| | ||| ||  || |||    
T  19063432 tgaagacacaagtttgtataaggaatagaagcttggagcaacgattattttggaggaattagaaggcatttgatgtttatccagtgaagaaggtcagaga 19063531  T
Q  155 aaggacaatagtacaattgtacaaccactacttcactcttgtatgcgcatagtactgctacaactgtgtctct 227  Q
    ||||||||||||| |||||||||||||||||| |||| |||| |||||||||||||||| ||  |||||||||    
T  19063532 aaggacaatagtaaaattgtacaaccactactccactattgtttgcgcatagtactgctgcagttgtgtctct 19063604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 68 - 194
Target Start/End: Original strand, 22766553 - 22766678
Alignment:
Q  68 ttgcagaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatccacttaaggagtgcaaagaaaggacaatagta 167  Q
    ||||||||||||| |||||||||||||||  ||| |||||||||||| |||| ||||||||||||||||||| || ||| |||   ||||||||||||||    
T  22766553 ttgcagaaggaatggaagcctagagcaacggctaattcagaggaatttgaaggcattggatgcttatccactgaa-gagcgcaggaaaaggacaatagta 22766651  T
Q  168 caattgtacaaccactacttcactctt 194  Q
    ||||||||||||||||||| |||||||    
T  22766652 caattgtacaaccactactccactctt 22766678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 55 - 186
Target Start/End: Complemental strand, 11078796 - 11078666
Alignment:
Q  55 tgaagacacaagtttgcagaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatccacttaaggagtgcaaaga 154  Q
    ||||||||| ||||||| |||||||||||||||| ||||||| ||| ||| |||||||| ||||| |||| ||||||||||||||||| ||| | | | |    
T  11078796 tgaagacacgagtttgcggaaggaatagaagcctggagcaactactcttttagaggaatcagaaggcattagatgcttatccacttaa-gagcgtagaaa 11078698  T
Q  155 aaggacaatagtacaattgtacaaccactact 186  Q
    ||||||||||||||||||||||| ||||||||    
T  11078697 aaggacaatagtacaattgtacatccactact 11078666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 68 - 191
Target Start/End: Original strand, 19197900 - 19198022
Alignment:
Q  68 ttgcagaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatccacttaaggagtgcaaagaaaggacaatagta 167  Q
    ||||||||||||| ||||||| ||||||| |||| |||||||||||| |||| ||||||||| ||||||| || | || |||||  ||||||||||||||    
T  19197900 ttgcagaaggaatggaagcctggagcaacgactacttcagaggaatttgaaggcattggatgattatcca-ttgaagaatgcaacaaaaggacaatagta 19197998  T
Q  168 caattgtacaaccactacttcact 191  Q
     |||||||||||||||||||||||    
T  19197999 aaattgtacaaccactacttcact 19198022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 55 - 193
Target Start/End: Complemental strand, 315233 - 315097
Alignment:
Q  55 tgaagacacaagtttgcagaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatccacttaaggagtgcaaaga 154  Q
    |||||||||| | |||||| ||||||| || ||| |||||||  ||||||||||||||||||||| ||||| ||||||||||||| || ||| |||   |    
T  315233 tgaagacacatgattgcaggaggaataaaaacctggagcaacggctatttcagaggaattagaaggcattgaatgcttatccactgaa-gagcgcatgaa 315135  T
Q  155 aaggacaatagtacaattgtacaaccactacttcactct 193  Q
    |||||||||||||| ||||||||||||||||| ||||||    
T  315134 aaggacaatagtac-attgtacaaccactactccactct 315097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 55 - 193
Target Start/End: Original strand, 16305171 - 16305308
Alignment:
Q  55 tgaagacacaagtttgcagaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatccacttaaggagtgcaaaga 154  Q
    |||||||| |||||||||||||||||||||||||  |||||  | ||||||||||||| |||||| |||||||| ||||| ||| ||| ||| |||   |    
T  16305171 tgaagacataagtttgcagaaggaatagaagcctgaagcaatgaatatttcagaggaaatagaaggcattggatacttatgcac-taaagagcgcaggaa 16305269  T
Q  155 aaggacaatagtacaattgtacaaccactacttcactct 193  Q
    |||||||||| |||| |||||||||||||||| ||||||    
T  16305270 aaggacaatattacatttgtacaaccactactccactct 16305308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 68 - 194
Target Start/End: Original strand, 8729018 - 8729144
Alignment:
Q  68 ttgcagaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatccacttaaggagtgca-aagaaaggacaatagt 166  Q
    ||||||||||||| ||||||| ||||||| ||||||| |||||||||||||| ||||||||||||||||||| || ||| |||  | ||||||| |||||    
T  8729018 ttgcagaaggaatggaagcctggagcaacgactattttagaggaattagaaggcattggatgcttatccactgaa-gagcgcatgaaaaaggac-atagt 8729115  T
Q  167 acaattgtac-aaccactacttcactctt 194  Q
    |||||||||| |||||||||| |||||||    
T  8729116 acaattgtacaaaccactactccactctt 8729144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 68 - 194
Target Start/End: Original strand, 9080905 - 9081031
Alignment:
Q  68 ttgcagaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatccacttaaggagtgca-aagaaaggacaatagt 166  Q
    ||||||||||||| ||||||| ||||||| ||||||| |||||||||||||| ||||||||||||||||||| || ||| |||  | ||||||| |||||    
T  9080905 ttgcagaaggaatggaagcctggagcaacgactattttagaggaattagaaggcattggatgcttatccactgaa-gagcgcatgaaaaaggac-atagt 9081002  T
Q  167 acaattgtac-aaccactacttcactctt 194  Q
    |||||||||| |||||||||| |||||||    
T  9081003 acaattgtacaaaccactactccactctt 9081031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 55 - 191
Target Start/End: Complemental strand, 13699506 - 13699372
Alignment:
Q  55 tgaagacacaagtttgcagaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatccacttaaggagtgcaaaga 154  Q
    |||||||||| | |||||||| ||| ||||| || |||||||||||||||||||||||| ||||| |||||||||||||||| | ||| ||| | | | |    
T  13699506 tgaagacacatgattgcagaaagaaaagaagtctggagcaacaactatttcagaggaataagaaggcattggatgcttatccgcataa-gagcgtacaaa 13699408  T
Q  155 aaggacaatagtacaattgtacaaccactacttcact 191  Q
    ||| || ||||||||||||||||||||||||| ||||    
T  13699407 aagaac-atagtacaattgtacaaccactactccact 13699372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 56 - 139
Target Start/End: Complemental strand, 3087684 - 3087601
Alignment:
Q  56 gaagacacaagtttgcagaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatccact 139  Q
    ||||||||| | |||||||||||||||||||||  |||||||||| ||||||||||||||||| |||||| |||||||||||||    
T  3087684 gaagacacatgattgcagaaggaatagaagcctgaagcaacaactctttcagaggaattagaatacattgaatgcttatccact 3087601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 59 - 191
Target Start/End: Complemental strand, 21317535 - 21317405
Alignment:
Q  59 gacacaagtttgcagaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatccacttaaggagtgcaaagaaagg 158  Q
    |||||| | ||||||||||||||||||||||||||||| ||||||| ||| |||||| ||| |||| ||||||||||| || || ||| |||   |||||    
T  21317535 gacacatgattgcagaaggaatagaagcctagagcaacgactattttagatgaattataaggcatttgatgcttatcctctgaa-gagcgcaggaaaagg 21317437  T
Q  159 acaatagtacaattgtacaaccactacttcact 191  Q
    || ||| ||||||||||||||||||||| ||||    
T  21317436 ac-ataatacaattgtacaaccactactccact 21317405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 68 - 183
Target Start/End: Original strand, 16794305 - 16794418
Alignment:
Q  68 ttgcagaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatccacttaaggagtgcaaagaaaggacaatagta 167  Q
    ||||||||||||| |||||||  |||||  ||||||||||||||||||| || ||||||||||||||||| || | ||| ||| | ||||||| ||||||    
T  16794305 ttgcagaaggaatggaagcctgaagcaatgactatttcagaggaattaggaggcattggatgcttatcca-ttgaagagcgcagaaaaaggac-atagta 16794402  T
Q  168 caattgtacaaccact 183  Q
    ||||||||||||||||    
T  16794403 caattgtacaaccact 16794418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 98 - 191
Target Start/End: Complemental strand, 15647855 - 15647762
Alignment:
Q  98 actatttcagaggaattagaagacattggatgcttatccacttaaggagtgcaaagaaaggacaatagtacaattgtacaaccactacttcact 191  Q
    ||||||| |||||||||||| | | |||||||||||||||||  |  || |||||||||||||| |||||||||| ||||||||||||||||||    
T  15647855 actatttaagaggaattagatggctttggatgcttatccactggataagggcaaagaaaggacagtagtacaattatacaaccactacttcact 15647762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 100 - 184
Target Start/End: Original strand, 14077405 - 14077487
Alignment:
Q  100 tatttcagaggaattagaagacattggatgcttatccacttaaggagtgcaaagaaaggacaatagtacaattgtacaaccacta 184  Q
    |||||||||||||||||||||||||||||||||||||||| || ||| ||||  ||||||| ||||||||| |||||||||||||    
T  14077405 tatttcagaggaattagaagacattggatgcttatccactgaa-gagcgcaagaaaaggac-atagtacaactgtacaaccacta 14077487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 68 - 184
Target Start/End: Complemental strand, 17697745 - 17697630
Alignment:
Q  68 ttgcagaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatccacttaaggagtgcaaagaaaggacaatagta 167  Q
    ||||||||||||||||||||| |||||| | ||| |||||||||||| |||| ||||||||||||||||| |  | ||   || | ||| ||||||||||    
T  17697745 ttgcagaaggaatagaagcctggagcaatagctaattcagaggaatttgaaggcattggatgcttatcca-tagaagaacacagaaaaacgacaatagta 17697647  T
Q  168 caattgtacaaccacta 184  Q
    |||||||||||||||||    
T  17697646 caattgtacaaccacta 17697630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 53 - 139
Target Start/End: Complemental strand, 13654065 - 13653980
Alignment:
Q  53 tctgaagacacaagtttgcagaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatccact 139  Q
    ||||||||||||   ||||||| ||||||||||||| |||||||||||||||||||||||||||||| |||| |||  |||||||||    
T  13654065 tctgaagacacatcattgcaga-ggaatagaagcctggagcaacaactatttcagaggaattagaaggcattagattattatccact 13653980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 68 - 139
Target Start/End: Complemental strand, 16882424 - 16882353
Alignment:
Q  68 ttgcagaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatccact 139  Q
    ||||||||||||| |||||||  | ||||| ||||||||||||||||| ||| |||||||||||||||||||    
T  16882424 ttgcagaaggaatggaagcctgcaacaacagctatttcagaggaattaaaaggcattggatgcttatccact 16882353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 90 - 192
Target Start/End: Original strand, 4243216 - 4243315
Alignment:
Q  90 gagcaacaactatttcagaggaattagaagacattggatgcttatccacttaaggagtgcaaagaaaggacaatagtacaattgtacaaccactacttca 189  Q
    ||||||| |||||||||||||||||| ||| ||||| ||||||||||||| ||| || ||||  ||| |||| |||||||||||||||||||||||| ||    
T  4243216 gagcaacgactatttcagaggaatta-aaggcattgaatgcttatccactgaag-agcgcaagaaaatgaca-tagtacaattgtacaaccactactcca 4243312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 55 - 184
Target Start/End: Complemental strand, 11513987 - 11513858
Alignment:
Q  55 tgaagacacaagtttgcagaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatccacttaaggagtgcaaaga 154  Q
    ||||| ||||||| || | |||||||| ||| || ||| ||| ||||||| |||||||||| ||| ||||  ||||||||||||  ||| ||   |  ||    
T  11513987 tgaaggcacaagtgtgtataaggaatataagactggagtaacgactatttaagaggaattataaggcatttcatgcttatccaccgaagaaggttaggga 11513888  T
Q  155 aaggacaatagtacaattgtacaaccacta 184  Q
    ||||||||||||||||||||||||||||||    
T  11513887 aaggacaatagtacaattgtacaaccacta 11513858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 55 - 138
Target Start/End: Original strand, 2903197 - 2903280
Alignment:
Q  55 tgaagacacaagtttgcagaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatccac 138  Q
    ||||||||||| | | ||||||||||||||| ||   ||||||| |||||| || |||||||||| ||||||||||||||||||    
T  2903197 tgaagacacaaatgtacagaaggaatagaagactgatgcaacaaatatttctgaagaattagaaggcattggatgcttatccac 2903280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 53 - 136
Target Start/End: Complemental strand, 20418382 - 20418299
Alignment:
Q  53 tctgaagacacaagtttgcagaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatcc 136  Q
    |||||| ||||| | ||| ||||| ||| |||| || ||||||| |||||||||||||||||||||| |||||||| |||||||    
T  20418382 tctgaatacacatgattgtagaagaaatggaagtctggagcaacgactatttcagaggaattagaaggcattggatacttatcc 20418299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 55 - 191
Target Start/End: Complemental strand, 13932084 - 13931958
Alignment:
Q  55 tgaagacacaagtttgcagaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatccacttaaggagtgcaaaga 154  Q
    |||||||||||||||||||||||||| ||| ||| |||  ||  |||| ||| |||||||||||| |||| ||||||||||          |  || |||    
T  13932084 tgaagacacaagtttgcagaaggaatggaaacctggagtgacggctatctcaaaggaattagaaggcattagatgcttatc----------ggtcagaga 13931995  T
Q  155 aaggacaatagtacaattgtacaaccactacttcact 191  Q
    || ||||||||||||||||||||||||||||| ||||    
T  13931994 aacgacaatagtacaattgtacaaccactactccact 13931958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 106 - 191
Target Start/End: Complemental strand, 14007669 - 14007585
Alignment:
Q  106 agaggaattagaagacattggatgcttatccacttaaggagtgcaaagaaaggacaatagtacaattgtacaaccactacttcact 191  Q
    ||||||||| |||| ||||||||| ||||||||| ||| || |||   ||||||||||||| ||||||||||||||||||| ||||    
T  14007669 agaggaatttgaaggcattggatgtttatccactaaag-agcgcaggaaaaggacaatagtgcaattgtacaaccactactccact 14007585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 69 - 193
Target Start/End: Complemental strand, 14072825 - 14072702
Alignment:
Q  69 tgcagaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatccacttaaggagtgcaaagaaaggacaatagtac 168  Q
    |||||||||||| | ||||| ||||||| | || || ||||||||| |||| ||||||||||||||||| || | ||  ||    |||||||||||||||    
T  14072825 tgcagaaggaatgggagcctggagcaacgaataatttagaggaatttgaaggcattggatgcttatcca-ttgaagaacgcgggaaaaggacaatagtac 14072727  T
Q  169 aattgtacaaccactacttcactct 193  Q
    | |||||||||||| ||| ||||||    
T  14072726 acttgtacaaccaccactccactct 14072702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 139
Target Start/End: Complemental strand, 27374904 - 27374837
Alignment:
Q  72 agaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatccact 139  Q
    |||||| || ||||||||||||||| | | ||| |||||||||||||| |||||||||||| ||||||    
T  27374904 agaaggtatggaagcctagagcaacgagtgttttagaggaattagaaggcattggatgcttctccact 27374837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 68 - 182
Target Start/End: Complemental strand, 10851944 - 10851832
Alignment:
Q  68 ttgcagaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatccacttaaggagtgcaaagaaaggacaatagta 167  Q
    |||||||||||||| |||| | ||| |||  |||||||| |||| ||||||  |||||||||||||| |||| || |||  |||  ||||||| ||||||    
T  10851944 ttgcagaaggaataaaagcttggagtaacggctatttcaaaggagttagaaagcattggatgcttattcactgaa-gagcacaagaaaaggac-atagta 10851847  T
Q  168 caattgtacaaccac 182  Q
    |||||||||||||||    
T  10851846 caattgtacaaccac 10851832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 111
Target Start/End: Original strand, 18459212 - 18459266
Alignment:
Q  57 aagacacaagtttgcagaaggaatagaagcctagagcaacaactatttcagagga 111  Q
    |||||| ||||||| ||||||||| ||||||| || |||| ||||||||||||||    
T  18459212 aagacataagtttgtagaaggaatggaagcctggaacaacgactatttcagagga 18459266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 185
Target Start/End: Original strand, 17769093 - 17769126
Alignment:
Q  152 agaaaggacaatagtacaattgtacaaccactac 185  Q
    |||||||||||||||| |||||||||||||||||    
T  17769093 agaaaggacaatagtataattgtacaaccactac 17769126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 228
Target Start/End: Original strand, 18459263 - 18459336
Alignment:
Q  156 aggacaatagtacaattgtacaaccactacttcactcttgtatgcgcatagtac-tgctacaactgtgtctctg 228  Q
    |||| |||| ||||||||||||||||||||| |||| |||| || ||||| |||  |||||| |||||||||||    
T  18459263 aggagaataatacaattgtacaaccactactccactattgtctgtgcatattacaagctacacctgtgtctctg 18459336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 185
Target Start/End: Original strand, 19070394 - 19070427
Alignment:
Q  152 agaaaggacaatagtacaattgtacaaccactac 185  Q
    |||||||||||||||| |||||||||||||||||    
T  19070394 agaaaggacaatagtataattgtacaaccactac 19070427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0388 (Bit Score: 82; Significance: 7e-39; HSPs: 1)
Name: scaffold0388
Description:

Target: scaffold0388; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 55 - 228
Target Start/End: Complemental strand, 5527 - 5354
Alignment:
Q  55 tgaagacacaagtttgcagaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatccacttaaggagtgcaaaga 154  Q
    |||||||||||||||||||| ||||||||||||| |||||||  ||| |||||||||||| |||| ||||||||  ||||||| | ||||||  |  |||    
T  5527 tgaagacacaagtttgcagatggaatagaagcctggagcaacggctaattcagaggaatttgaaggcattggatatttatccagtgaaggagctcggaga 5428  T
Q  155 aaggacaatagtacaattgtacaaccactacttcactcttgtatgcgcatagtactgctacaactgtgtctctg 228  Q
    |||||||||||||||||||||||||||||||| |||  |||| || |||||||||||||| | || ||||||||    
T  5427 aaggacaatagtacaattgtacaaccactactccacaattgtttgtgcatagtactgctatagctatgtctctg 5354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 1e-37; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 55 - 230
Target Start/End: Original strand, 14793953 - 14794128
Alignment:
Q  55 tgaagacacaagtttgcagaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatccacttaaggagtgcaaaga 154  Q
    ||||||||||| |||| |||||||| |||||||| ||||||| |||||||||||||||||| ||||||||| |||||||  |||  ||| ||  ||||||    
T  14793953 tgaagacacaaatttgtagaaggaacagaagcctggagcaacgactatttcagaggaattataagacattgcatgcttactcaccgaagaagaacaaaga 14794052  T
Q  155 aaggacaatagtacaattgtacaaccactacttcactcttgtatgcgcatagtactgctacaactgtgtctctgct 230  Q
    |||||||||| |||| ||||||||||||| || |||| || | ||||||||||||| |||||  ||||||||||||    
T  14794053 aaggacaataatacatttgtacaaccactgctccactattatctgcgcatagtactactacagttgtgtctctgct 14794128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 55 - 230
Target Start/End: Original strand, 19320364 - 19320547
Alignment:
Q  55 tgaagacacaagtttgcagaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatccacttaaggagtgcaaaga 154  Q
    |||||||||  | |||||||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||||||||| |||| ||| || ||| |||    
T  19320364 tgaagacacgtgattgcagaaggaatagaaggctagagcaacagctatttcagaggaattagaaggcattggatgcttatacactgaagaagcgcagaga 19320463  T
Q  155 aaggacaatagtacaattgtacaaccactacttcac--------tcttgtatgcgcatagtactgctacaactgtgtctctgct 230  Q
    || ||||||||||| || ||||||||| |||| |||        || ||||||||||||| |||||||||  ||||||||||||    
T  19320464 aatgacaatagtacgatagtacaaccagtactccactattatgttcatgtatgcgcatagcactgctacagttgtgtctctgct 19320547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 55 - 193
Target Start/End: Complemental strand, 25918789 - 25918652
Alignment:
Q  55 tgaagacacaagtttgcagaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatccacttaaggagtgcaaaga 154  Q
    ||||||||||||||||||||||||||||||| || ||||||   |||  |||||||||||||||| |||||||||||||||||| ||| ||| |||        
T  25918789 tgaagacacaagtttgcagaaggaatagaagtctggagcaatgtctacatcagaggaattagaaggcattggatgcttatccac-taaagagcgcagtag 25918691  T
Q  155 aaggacaatagtacaattgtacaaccactacttcactct 193  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  25918690 aaggacaatagtacaattgtacaaccactactccactct 25918652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 68 - 185
Target Start/End: Complemental strand, 21846279 - 21846164
Alignment:
Q  68 ttgcagaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatccacttaaggagtgcaaagaaaggacaatagta 167  Q
    ||||||||||||| ||||||||||||||| ||||||||| |||||||||||| |||| ||||| |||||||||||  || ||||  ||||||| ||||||    
T  21846279 ttgcagaaggaatggaagcctagagcaacgactatttcaaaggaattagaaggcatttgatgcatatccacttaa-aagcgcaagaaaaggac-atagta 21846182  T
Q  168 caattgtacaaccactac 185  Q
    ||||||||||||||||||    
T  21846181 caattgtacaaccactac 21846164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 68 - 185
Target Start/End: Original strand, 24440701 - 24440815
Alignment:
Q  68 ttgcagaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatccacttaaggagtgcaaagaaaggacaatagta 167  Q
    ||||||||||||||||||||| |||||||  ||||||||||||||||||||| ||||||||| ||||||||| || ||| ||| | ||||||| ||||||    
T  24440701 ttgcagaaggaatagaagcctggagcaactgctatttcagaggaattagaaggcattggatgtttatccactgaa-gagcgcata-aaaggac-atagta 24440797  T
Q  168 caattgtacaaccactac 185  Q
    ||||||||||||||||||    
T  24440798 caattgtacaaccactac 24440815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 72 - 194
Target Start/End: Complemental strand, 22383599 - 22383478
Alignment:
Q  72 agaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatccacttaaggagtgcaaagaaaggacaatagtacaat 171  Q
    ||||||||| ||||||  |||||||  |||||| |||||||||||||| |||||||||||||||||| ||| ||| ||| | |||||||||||||| | |    
T  22383599 agaaggaatggaagccgtgagcaacggctattttagaggaattagaaggcattggatgcttatccac-taaagagcgcataaaaaggacaatagtatatt 22383501  T
Q  172 tgtacaaccactacttcactctt 194  Q
    ||||||||||||||| |||||||    
T  22383500 tgtacaaccactactccactctt 22383478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 55 - 196
Target Start/End: Original strand, 15668509 - 15668649
Alignment:
Q  55 tgaagacacaagtttgcagaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatccacttaaggagtgcaaaga 154  Q
    ||||||||||||  ||||||||||||| |||| |  ||||||  |||||||||| |||||| ||| ||||||||||||||||||| || ||  | | | |    
T  15668509 tgaagacacaagactgcagaaggaatataagcttgaagcaacggctatttcagatgaattaaaaggcattggatgcttatccactgaa-gaccgaagaaa 15668607  T
Q  155 aaggacaatagtacaattgtacaaccactacttcactcttgt 196  Q
     |||||||||||||||||||||| |||||||| |||||||||    
T  15668608 taggacaatagtacaattgtacacccactactccactcttgt 15668649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 72 - 192
Target Start/End: Complemental strand, 24157960 - 24157840
Alignment:
Q  72 agaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatccacttaag-gagtgcaaagaaaggacaatagtacaa 170  Q
    ||||||||| ||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||| ||| | ||   || ||||||  |||||||||    
T  24157960 agaaggaatggaagcctggagcaacgactattttagaggaattagaagacattggatgcttatccactgaagagcgtaggaaaaaagga-tatagtacaa 24157862  T
Q  171 ttgtacaaccactacttcactc 192  Q
    ||| |||||||||||| |||||    
T  24157861 ttgcacaaccactactccactc 24157840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 72 - 185
Target Start/End: Complemental strand, 20568264 - 20568152
Alignment:
Q  72 agaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatccacttaaggagtgcaaag--aaaggacaatagtaca 169  Q
    ||||||||||||||||| |||||||  |||||| | |||||||||||| |||||||||||||||| || |   || |||| |  ||||||||||||||||    
T  20568264 agaaggaatagaagcctggagcaacggctattttataggaattagaaggcattggatgcttatccgctaa---agagcaatggaaaaggacaatagtaca 20568168  T
Q  170 attgtacaaccactac 185  Q
    ||||||||||||||||    
T  20568167 attgtacaaccactac 20568152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 72 - 182
Target Start/End: Original strand, 21911046 - 21911154
Alignment:
Q  72 agaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatccacttaaggagtgcaaagaaaggacaatagtacaat 171  Q
    ||||||||||||||||| ||||||| || |||| |||| ||||||||| |||| ||||||||||||| ||| |||||||   ||||||| ||||||||||    
T  21911046 agaaggaatagaagcctggagcaacgacgattttagagaaattagaaggcatttgatgcttatccac-taaagagtgcaggaaaaggac-atagtacaat 21911143  T
Q  172 tgtacaaccac 182  Q
    |||||||||||    
T  21911144 tgtacaaccac 21911154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 55 - 139
Target Start/End: Original strand, 19643640 - 19643726
Alignment:
Q  55 tgaagacacaagtttgcagaaggaatagaagcctagagcaa--caactatttcagaggaattagaagacattggatgcttatccact 139  Q
    ||||||||||||| ||||||||||||| ||| || ||||||  ||||||||| |||||||||||||| |||||||||||| ||||||    
T  19643640 tgaagacacaagtgtgcagaaggaatataagactggagcaaaacaactattttagaggaattagaaggcattggatgcttgtccact 19643726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 55 - 186
Target Start/End: Original strand, 33705966 - 33706097
Alignment:
Q  55 tgaagacacaagtttgcagaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatccacttaaggagtgcaaaga 154  Q
    |||||||||| || ||||||| ||||||||| ||  |||||| |||||||||||| ||||||||| | ||||||||||||||||  |    |  ||  ||    
T  33705966 tgaagacacaggtgtgcagaatgaatagaagactgaagcaacgactatttcagagaaattagaaggctttggatgcttatccacagagaatggacattga 33706065  T
Q  155 aaggacaatagtacaattgtacaaccactact 186  Q
    ||||| ||||||||||||||||||||||||||    
T  33706066 aaggataatagtacaattgtacaaccactact 33706097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 55 - 137
Target Start/End: Complemental strand, 22683575 - 22683493
Alignment:
Q  55 tgaagacacaagtttgcagaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatcca 137  Q
    ||||||||||||| || |||||||||| ||  |||||||||| ||||||||| ||||| |||||| ||||| |||||||||||    
T  22683575 tgaagacacaagtgtgtagaaggaatataaaactagagcaacgactatttcaaaggaaatagaaggcattgaatgcttatcca 22683493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 72 - 184
Target Start/End: Original strand, 10896403 - 10896514
Alignment:
Q  72 agaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatccacttaaggagtgcaaagaaaggacaatagtacaat 171  Q
    |||| |||||||| ||| |||||||  |||||||||| |||||||||| |||||||||||||| | |  || ||| |  |  ||||||||||||||||||    
T  10896403 agaaagaatagaatcctggagcaacggctatttcagaagaattagaaggcattggatgcttattcgccgaa-gagcgttagaaaaggacaatagtacaat 10896501  T
Q  172 tgtacaaccacta 184  Q
    |||||||||||||    
T  10896502 tgtacaaccacta 10896514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 68 - 130
Target Start/End: Complemental strand, 24844266 - 24844204
Alignment:
Q  68 ttgcagaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgc 130  Q
    |||||||| |||||||||||| ||||||| |||||||||||||| || |||| ||||||||||    
T  24844266 ttgcagaaagaatagaagcctggagcaacgactatttcagaggagttggaaggcattggatgc 24844204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 186
Target Start/End: Original strand, 22524887 - 22524918
Alignment:
Q  155 aaggacaatagtacaattgtacaaccactact 186  Q
    ||||||||||||||||||||||||||||||||    
T  22524887 aaggacaatagtacaattgtacaaccactact 22524918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 184
Target Start/End: Complemental strand, 24844181 - 24844151
Alignment:
Q  154 aaaggacaatagtacaattgtacaaccacta 184  Q
    |||||||||||||||||||||||||||||||    
T  24844181 aaaggacaatagtacaattgtacaaccacta 24844151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 64 - 225
Target Start/End: Original strand, 17262737 - 17262899
Alignment:
Q  64 aagtttgcagaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatccacttaaggagtgcaaagaaaggacaat 163  Q
    |||| |||| ||||||||||||||| ||||||  |||||||||||||||| ||||| ||||||||||||||||||| || ||| |||   ||||||||||    
T  17262737 aagtctgcaaaaggaatagaagcctggagcaatgactatttcagaggaatgagaaggcattggatgcttatccactgaa-gagcgcaggtaaaggacaat 17262835  T
Q  164 agtacaattgtacaaccactacttcactct--tgtatgcgcatagtactgctacaactgtgtct 225  Q
    ||||||||||||||||||||||| ||||||  ||| |||  ||||||||||||||  |||||||    
T  17262836 agtacaattgtacaaccactactccactctcatgtctgcatatagtactgctacagttgtgtct 17262899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 56 - 169
Target Start/End: Complemental strand, 34637661 - 34637548
Alignment:
Q  56 gaagacacaagtttgcagaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatccacttaaggagtgcaaagaa 155  Q
    ||||||||||||||||||||||||||||| |||||||| || ||||||| |||||||||| ||| ||||||||||||||||||| ||||||  || ||||    
T  34637661 gaagacacaagtttgcagaaggaatagaatcctagagcgacgactattttagaggaattaaaaggcattggatgcttatccactaaaggagctcagagaa 34637562  T
Q  156 aggacaatagtaca 169  Q
    |||||||| |||||    
T  34637561 aggacaatggtaca 34637548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 72 - 193
Target Start/End: Complemental strand, 20969326 - 20969207
Alignment:
Q  72 agaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatccacttaaggagtgcaaagaaaggacaatagtacaat 171  Q
    |||||||||||||||||| | |||| ||||||| |||||||||||||  |||||||||||||||||||||| |||||| | ||||||   ||||||||||    
T  20969326 agaaggaatagaagcctacatcaacgactatttaagaggaattagaaagcattggatgcttatccacttaa-gagtgc-aggaaagggacatagtacaat 20969229  T
Q  172 tgtacaaccactacttcactct 193  Q
    ||||||||||||||| ||||||    
T  20969228 tgtacaaccactactccactct 20969207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 53 - 186
Target Start/End: Complemental strand, 27057463 - 27057332
Alignment:
Q  53 tctgaagacacaagtttgcagaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatccacttaaggagtgcaaa 152  Q
    ||||||||||||   |||||||||||||| ||| |||||||||  |||||||||||||||||||||| |||||||||  |||||||| || ||| |||||    
T  27057463 tctgaagacacatcattgcagaaggaataaaagactagagcaatgactatttcagaggaattagaaggcattggatgactatccactgaa-gagcgcaaa 27057365  T
Q  153 gaaaggacaatagtacaattgtacaaccactact 186  Q
     ||||||| ||| |||||||||||||||||||||    
T  27057364 aaaaggac-ataatacaattgtacaaccactact 27057332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 55 - 183
Target Start/End: Original strand, 27276139 - 27276268
Alignment:
Q  55 tgaagacacaagtttgcagaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatccacttaagga-gtgcaaag 153  Q
    |||||||| | || |||||||||||||||||| |  | |||||| |||||||||||||||||||| ||||| ||||||||||||| ||| | |  || ||    
T  27276139 tgaagacatatgtatgcagaaggaatagaagcgtgaaacaacaattatttcagaggaattagaaggcattgaatgcttatccactgaagaatgcacagag 27276238  T
Q  154 aaaggacaatagtacaattgtacaaccact 183  Q
    ||||||||||||||||||||||||||||||    
T  27276239 aaaggacaatagtacaattgtacaaccact 27276268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 53 - 191
Target Start/End: Original strand, 31589006 - 31589142
Alignment:
Q  53 tctgaagacacaagtttgcagaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatccacttaaggagtgcaaa 152  Q
    ||||||||||||   ||||||||||||||||||||| |||||||| ||| ||||||||||||| ||| |||||||||| |||||||| || ||  |||      
T  31589006 tctgaagacacatcattgcagaaggaatagaagcctggagcaacagctaattcagaggaattaaaaggcattggatgcgtatccactgaa-gaacgcagg 31589104  T
Q  153 gaaaggacaatagtacaattgtacaaccactacttcact 191  Q
     ||||||| ||||||||||||||||||||||||| ||||    
T  31589105 aaaaggac-atagtacaattgtacaaccactactccact 31589142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 55 - 136
Target Start/End: Original strand, 20237378 - 20237459
Alignment:
Q  55 tgaagacacaagtttgcagaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatcc 136  Q
    |||||||| ||||||||| ||||||||||||||| ||||||| |||||||||||||||||||||| |||| |||||||||||    
T  20237378 tgaagacataagtttgcaaaaggaatagaagccttgagcaacgactatttcagaggaattagaaggcatttgatgcttatcc 20237459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 68 - 185
Target Start/End: Original strand, 26119833 - 26119948
Alignment:
Q  68 ttgcagaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatccacttaaggagtgcaaagaaaggacaatagta 167  Q
    ||||| ||||||| ||||||| ||||||| ||||||| |||||||||||||| ||||||||||||||||||| || ||| ||||  ||| ||| ||||||    
T  26119833 ttgcaaaaggaatggaagcctggagcaacgactattttagaggaattagaaggcattggatgcttatccactgaa-gagcgcaagaaaaagac-atagta 26119930  T
Q  168 caattgtacaaccactac 185  Q
    ||||||||||||||||||    
T  26119931 caattgtacaaccactac 26119948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 53 - 194
Target Start/End: Original strand, 39798875 - 39799014
Alignment:
Q  53 tctgaagacacaagtttgcagaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatccacttaaggagtgcaaa 152  Q
    ||||||||||||   |||||||||||||| ||| || ||||||| |||||||||||| ||||||||  |||||||||||||| ||||||| ||| ||| |    
T  39798875 tctgaagacacataattgcagaaggaataaaaggctggagcaacgactatttcagagaaattagaaagcattggatgcttattcacttaa-gagcgcaga 39798973  T
Q  153 gaaaggacaatagtacaattgtacaaccactacttcactctt 194  Q
     || |||| ||||| ||||||||||||||||||| |||||||    
T  39798974 aaagggac-atagtgcaattgtacaaccactactccactctt 39799014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 66 - 194
Target Start/End: Complemental strand, 34638583 - 34638457
Alignment:
Q  66 gtttgcagaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatccacttaaggagtgcaaagaaaggacaatag 165  Q
    ||||||| ||||||| ||||||| |||||||  ||| |||||||||||| |||| ||||||||| ||||||||| || ||| ||| | ||||||||||||    
T  34638583 gtttgcataaggaatggaagcctggagcaacggctaattcagaggaatttgaaggcattggatgtttatccactgaa-gagcgcaga-aaaggacaatag 34638486  T
Q  166 tacaattgtacaaccactacttcactctt 194  Q
    | ||||||||||||||||||| |||||||    
T  34638485 tgcaattgtacaaccactactccactctt 34638457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 68 - 186
Target Start/End: Complemental strand, 13692551 - 13692436
Alignment:
Q  68 ttgcagaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatccacttaaggagtgcaaag-aaaggacaatagt 166  Q
    ||||||||||||||||||||| ||||||  ||||||| |||||||||||||||||||| ||||||||||||   || || ||| || ||||||| |||||    
T  13692551 ttgcagaaggaatagaagcctcgagcaatgactattttagaggaattagaagacattgaatgcttatccac---agaagagcacagaaaaggac-atagt 13692456  T
Q  167 acaattgtacaaccactact 186  Q
    |||||| |||||||||||||    
T  13692455 acaattatacaaccactact 13692436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 68 - 192
Target Start/End: Complemental strand, 20567936 - 20567813
Alignment:
Q  68 ttgcagaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatccacttaaggagtgcaaagaaaggacaatagta 167  Q
    |||||||||||||  || ||| ||||||| |||| |||||||||||| |||| ||||||||||||||| || | | ||| || |  ||||||||||||||    
T  20567936 ttgcagaaggaatgcaatcctggagcaacgactacttcagaggaatttgaaggcattggatgcttatcgac-tgatgagcgctagaaaaggacaatagta 20567838  T
Q  168 caattgtacaaccactacttcactc 192  Q
    ||||||||||||||||||| |||||    
T  20567837 caattgtacaaccactactccactc 20567813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 68 - 185
Target Start/End: Complemental strand, 23589846 - 23589731
Alignment:
Q  68 ttgcagaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatccacttaaggagtgcaaag--aaaggacaatag 165  Q
    ||||||||||||| || |||| ||||||| |||||||||||||||||||||| ||||||||| ||||||||| |   || ||| ||  ||||||| ||||    
T  23589846 ttgcagaaggaatggatgcctggagcaacgactatttcagaggaattagaaggcattggatggttatccactaa---agagcataggaaaaggac-atag 23589751  T
Q  166 tacaattgtacaaccactac 185  Q
    ||||||||||||||||||||    
T  23589750 tacaattgtacaaccactac 23589731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 70 - 134
Target Start/End: Original strand, 2152916 - 2152980
Alignment:
Q  70 gcagaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttat 134  Q
    ||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||| ||||||||    
T  2152916 gcagaaggaatagaagcctggagcaacaactatttcagaagaattggaagacattgaatgcttat 2152980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 55 - 139
Target Start/End: Original strand, 22585996 - 22586080
Alignment:
Q  55 tgaagacacaagtttgcagaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatccact 139  Q
    ||||||||||||   ||||||||||||||||||| ||||||| ||||||| ||| || | ||||| ||||| |||||||||||||    
T  22585996 tgaagacacaagacagcagaaggaatagaagcctggagcaacgactattttagaagactaagaaggcattgaatgcttatccact 22586080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 154 - 225
Target Start/End: Complemental strand, 24021740 - 24021667
Alignment:
Q  154 aaaggacaatagtacaattgtacaaccactacttcactct--tgtatgcgcatagtactgctacaactgtgtct 225  Q
    ||||||||||| ||||||||||||||||||||| ||||||  ||| ||   |||||||||||||| ||||||||    
T  24021740 aaaggacaataatacaattgtacaaccactactccactctcatgtttggatatagtactgctacagctgtgtct 24021667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 134
Target Start/End: Complemental strand, 16607646 - 16607581
Alignment:
Q  68 ttgcagaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttat 134  Q
    ||||||||| ||||||||||| |||||||  ||| |||||||||||| |||| ||||||| ||||||    
T  16607646 ttgcagaag-aatagaagcctggagcaacggctaattcagaggaatttgaaggcattggaagcttat 16607581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 181
Target Start/End: Original strand, 26055578 - 26055658
Alignment:
Q  101 atttcagaggaattagaagacattggatgcttatccacttaaggagtgcaaagaaaggacaatagtacaattgtacaacca 181  Q
    |||||| |||||||||| | ||||| |||||||||||||  || ||  || ||| ||||||||| ||||| ||||||||||    
T  26055578 atttcaaaggaattagagggcattgaatgcttatccactggagaaggacatagataggacaataatacaactgtacaacca 26055658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0498 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0498
Description:

Target: scaffold0498; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 56 - 186
Target Start/End: Original strand, 3268 - 3398
Alignment:
Q  56 gaagacacaagtttgcagaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatccacttaaggagtgcaaagaa 155  Q
    |||||||||||||||||||||||||| ||| || ||||||  ||||||||||||||||| |||| ||||||||||||||||||  ||||||   | ||||    
T  3268 gaagacacaagtttgcagaaggaataaaagtctggagcaatgactatttcagaggaatttgaaggcattggatgcttatccacagaaggagctaagagaa 3367  T
Q  156 aggacaatagtacaattgtacaaccactact 186  Q
    |||| ||||||| ||||||||||||||||||    
T  3368 aggataatagtaaaattgtacaaccactact 3398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 70; Significance: 1e-31; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 61 - 230
Target Start/End: Complemental strand, 12541766 - 12541597
Alignment:
Q  61 cacaagtttgcagaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatccacttaaggagtgcaaagaaaggac 160  Q
    |||||||||||||||| ||||||||||| ||| ||| ||||||| |||||||||||||| ||||||||  ||||||  | ||||||   | ||||||||     
T  12541766 cacaagtttgcagaagaaatagaagcctggagaaacgactattttagaggaattagaaggcattggatttttatcctttgaaggagctaagagaaaggat 12541667  T
Q  161 aatagtacaattgtacaaccactacttcactcttgtatgcgcatagtactgctacaactgtgtctctgct 230  Q
    |||||||||||||||||||||||||| |||| |||| |||||| | |||| ||| |  ||||||||||||    
T  12541666 aatagtacaattgtacaaccactactccactattgtctgcgcagaatactactatagttgtgtctctgct 12541597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 55 - 191
Target Start/End: Original strand, 19505450 - 19505584
Alignment:
Q  55 tgaagacacaagtttgcagaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatccacttaaggagtgcaaaga 154  Q
    |||||||||||||||||||||||||||||| ||| |||||||  ||||||||||||||||||||| ||||| ||||||| |||| ||  |||  | | ||    
T  19505450 tgaagacacaagtttgcagaaggaatagaatcctcgagcaacggctatttcagaggaattagaaggcattgaatgcttacccac-tatagagctc-atga 19505547  T
Q  155 aaggacaatagtacaattgtacaaccactacttcact 191  Q
    |||||||||||||||||||||||||||||||| ||||    
T  19505548 aaggacaatagtacaattgtacaaccactactccact 19505584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 68 - 181
Target Start/End: Complemental strand, 18558150 - 18558039
Alignment:
Q  68 ttgcagaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatccacttaaggagtgcaaagaaaggacaatagta 167  Q
    |||||||||||||| |||||||||||||| ||||| |||||| ||||||||| ||||||||| ||||||||| || |||||||   ||||||| ||||||    
T  18558150 ttgcagaaggaatataagcctagagcaacgactatatcagagaaattagaaggcattggatgtttatccactgaa-gagtgcaggaaaaggac-atagta 18558053  T
Q  168 caattgtacaacca 181  Q
    ||||||||||||||    
T  18558052 caattgtacaacca 18558039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 68 - 139
Target Start/End: Original strand, 17916845 - 17916916
Alignment:
Q  68 ttgcagaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatccact 139  Q
    ||||||||||||| ||||||| ||||||| ||||||| |||||||||||||| ||||||| |||||||||||    
T  17916845 ttgcagaaggaatggaagcctggagcaacgactattttagaggaattagaaggcattggaagcttatccact 17916916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 55 - 129
Target Start/End: Original strand, 1208634 - 1208709
Alignment:
Q  55 tgaagacacaagtttgcagaaggaatagaagcctagag-caacaactatttcagaggaattagaagacattggatg 129  Q
    |||||||||||||||| ||||||||||||||||| | | |||| ||||||||||||||||| |||| |||||||||    
T  1208634 tgaagacacaagtttgtagaaggaatagaagcctggggccaacgactatttcagaggaatttgaaggcattggatg 1208709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 53 - 137
Target Start/End: Complemental strand, 12194047 - 12193963
Alignment:
Q  53 tctgaagacacaagtttgcagaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatcca 137  Q
    ||||||||||||   ||| ||| ||||||||||||| || |||||||||||||||| ||||| |||| |||||||||||| ||||    
T  12194047 tctgaagacacatcattgtagagggaatagaagcctggaacaacaactatttcagaagaattggaaggcattggatgcttgtcca 12193963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 53 - 137
Target Start/End: Complemental strand, 12438475 - 12438391
Alignment:
Q  53 tctgaagacacaagtttgcagaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatcca 137  Q
    ||||||||||||   ||| ||| ||||||||||||| || |||||||||||||||| ||||| |||| |||||||||||| ||||    
T  12438475 tctgaagacacatcattgtagagggaatagaagcctggaacaacaactatttcagaagaattggaaggcattggatgcttgtcca 12438391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 154 - 225
Target Start/End: Original strand, 1209865 - 1209938
Alignment:
Q  154 aaaggacaatagtacaattgtacaaccactacttcac--tcttgtatgcgcatagtactgctacaactgtgtct 225  Q
    |||||| ||||||||||||||||||||||| || |||  || ||| ||| || |||||||||||||||||||||    
T  1209865 aaaggataatagtacaattgtacaaccactgctccactttcatgtctgcacacagtactgctacaactgtgtct 1209938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 185
Target Start/End: Complemental strand, 17688027 - 17687997
Alignment:
Q  155 aaggacaatagtacaattgtacaaccactac 185  Q
    |||||||||||||||||||||||||||||||    
T  17688027 aaggacaatagtacaattgtacaaccactac 17687997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 114
Target Start/End: Complemental strand, 23772499 - 23772455
Alignment:
Q  70 gcagaaggaatagaagcctagagcaacaactatttcagaggaatt 114  Q
    ||||||||||| ||||||| ||||||| |||| ||||||||||||    
T  23772499 gcagaaggaattgaagcctggagcaacgactaattcagaggaatt 23772455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 56 - 225
Target Start/End: Original strand, 16105006 - 16105174
Alignment:
Q  56 gaagacacaagtttgcagaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatccacttaaggagtgcaaagaa 155  Q
    |||||| ||||||||||||||||||| |||||| ||||||| ||||||| | |||||||||||| ||||||||||||||||| || | ||| ||||  ||    
T  16105006 gaagacgcaagtttgcagaaggaatataagcctggagcaacgactattttataggaattagaaggcattggatgcttatcca-ttgaagagcgcaagaaa 16105104  T
Q  156 aggacaatagtacaattgtacaaccactacttcactcttgtatgcgcatagtactgctacaactgtgtct 225  Q
    | ||||||| |||||||||||||||| |||| ||||| ||| |||  ||| |||| |||||| |||||||    
T  16105105 atgacaatattacaattgtacaaccattactccactcatgtttgcatataatactactacaattgtgtct 16105174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 55 - 184
Target Start/End: Original strand, 18361593 - 18361720
Alignment:
Q  55 tgaagacacaagtttgcagaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatccacttaaggagtgcaaaga 154  Q
    |||||||||| | ||| ||||||||||||||| |  ||||||||||||||||||||||||||||| |||| ||||||||||||| |||  || || | ||    
T  18361593 tgaagacacatgattgtagaaggaatagaagcttgaagcaacaactatttcagaggaattagaaggcattagatgcttatccac-taaaaagcgc-agga 18361690  T
Q  155 aaggacaatagtacaattgtacaaccacta 184  Q
    ||||||||||||||||||||||||||||||    
T  18361691 aaggacaatagtacaattgtacaaccacta 18361720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 69 - 186
Target Start/End: Original strand, 15871121 - 15871237
Alignment:
Q  69 tgcagaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatccacttaaggagtgcaaagaaaggacaatagtac 168  Q
    ||||||||||||||||| || ||||||||| | |||| || |||||||||| |||||||||||||||||| || | ||  ||  | ||||||||||||||    
T  15871121 tgcagaaggaatagaagactggagcaacaaatttttctgaagaattagaaggcattggatgcttatccacataggaaggacattg-aaggacaatagtac 15871219  T
Q  169 aattgtacaaccactact 186  Q
    ||||||||||||||||||    
T  15871220 aattgtacaaccactact 15871237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 72 - 192
Target Start/End: Original strand, 16307756 - 16307874
Alignment:
Q  72 agaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatccacttaaggagtgcaaagaaaggacaatagtacaat 171  Q
    ||||||||| ||||||| ||||||| ||||||| ||| |||||||||| ||||||||||||||||||| || |||  ||   ||||||| ||||||||||    
T  16307756 agaaggaatggaagcctggagcaacgactattttagatgaattagaaggcattggatgcttatccactgaa-gagcacaggaaaaggac-atagtacaat 16307853  T
Q  172 tgtacaaccactacttcactc 192  Q
    |||||||||||||||| ||||    
T  16307854 tgtacaaccactacttaactc 16307874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 74 - 191
Target Start/End: Complemental strand, 16472808 - 16472694
Alignment:
Q  74 aaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatccacttaaggagtgcaaagaaaggacaatagtacaattg 173  Q
    |||||||||||| || ||| ||| ||| ||||| ||| |||||||| ||||||||||||||||||| |||||   || |||||||||||||||||||||     
T  16472808 aaggaatagaagactggagtaacgactttttcaaaggcattagaaggcattggatgcttatccactaaagga---cagagaaaggacaatagtacaatta 16472712  T
Q  174 tacaaccactacttcact 191  Q
    |||||||| |||| ||||    
T  16472711 tacaaccaatactccact 16472694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 53 - 194
Target Start/End: Original strand, 18047844 - 18047983
Alignment:
Q  53 tctgaagacacaagtttgcagaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatccacttaaggagtgcaaa 152  Q
    ||||||||||||   ||| |||||||||| |||||||||||||    |||||||||||||||||||| ||||| |||||||||| || || ||| || ||    
T  18047844 tctgaagacacatcattgtagaaggaataaaagcctagagcaatggatatttcagaggaattagaaggcattgaatgcttatcctctgaa-gagcgc-aa 18047941  T
Q  153 gaaaggacaatagtacaattgtacaaccactacttcactctt 194  Q
    |||| ||  |||||||||||||||||| |||||| |||||||    
T  18047942 gaaaagaacatagtacaattgtacaacaactactccactctt 18047983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 72 - 191
Target Start/End: Original strand, 9064203 - 9064320
Alignment:
Q  72 agaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatccacttaaggagtgcaaagaaaggacaatagtacaat 171  Q
    ||||||||| ||||||| ||||||| |||||||  ||||||||||||| ||||| ||||||||||||| || ||| ||| | |||| || ||||||||||    
T  9064203 agaaggaatggaagcctggagcaacgactatttatgaggaattagaaggcattgaatgcttatccactgaa-gagcgcagaaaaagaac-atagtacaat 9064300  T
Q  172 tgtacaaccactacttcact 191  Q
    |||||||||| |||| ||||    
T  9064301 tgtacaaccattactccact 9064320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 74 - 185
Target Start/End: Original strand, 13172382 - 13172491
Alignment:
Q  74 aaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatccacttaaggagtgcaaagaaaggacaatagtacaattg 173  Q
    ||||| ||||||||| ||||||| |||||||||||| ||||||||| |||||||||||||||||||| | ||  |||   || |||| ||||||||||||    
T  13172382 aaggagtagaagcctggagcaacgactatttcagagtaattagaaggcattggatgcttatccacttga-gatcgcatgaaatggac-atagtacaattg 13172479  T
Q  174 tacaaccactac 185  Q
    ||||||||||||    
T  13172480 tacaaccactac 13172491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 55 - 138
Target Start/End: Original strand, 11572264 - 11572347
Alignment:
Q  55 tgaagacacaagtttgcagaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatccac 138  Q
    ||||||||||| | ||||||||||||||||| ||  |||||||  |||||||||||||||||||| ||||| ||||||| ||||    
T  11572264 tgaagacacaaatgtgcagaaggaatagaagactgaagcaacagatatttcagaggaattagaaggcattgtatgcttaaccac 11572347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 73 - 138
Target Start/End: Complemental strand, 14114166 - 14114101
Alignment:
Q  73 gaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatccac 138  Q
    ||||||||||||| || |||||| |||||||||||| |||||||||| |||| |||||||||||||    
T  14114166 gaaggaatagaagactggagcaaaaactatttcagatgaattagaaggcattagatgcttatccac 14114101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 73 - 138
Target Start/End: Complemental strand, 14423816 - 14423751
Alignment:
Q  73 gaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatccac 138  Q
    ||||||||||||| || |||||| |||||||||||| |||||||||| |||| |||||||||||||    
T  14423816 gaaggaatagaagactggagcaaaaactatttcagatgaattagaaggcattagatgcttatccac 14423751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 68 - 139
Target Start/End: Complemental strand, 5035508 - 5035437
Alignment:
Q  68 ttgcagaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatccact 139  Q
    |||||||||||||| |||||| || ||||  ||||||||||  ||||||||| |||||||||||||||||||    
T  5035508 ttgcagaaggaataaaagcctggaacaacgcctatttcagataaattagaaggcattggatgcttatccact 5035437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 61 - 191
Target Start/End: Complemental strand, 16412865 - 16412745
Alignment:
Q  61 cacaagtttgcagaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatccacttaaggagtgcaaagaaaggac 160  Q
    |||||||||| ||||||||||||||||  ||||||| ||||||||||||||          |||||||||||||||| | ||| |   ||  ||||||||    
T  16412865 cacaagtttgtagaaggaatagaagccaggagcaacgactatttcagagga----------attggatgcttatccattgaagaatgtcagtgaaaggac 16412776  T
Q  161 aatagtacaattgtacaaccactacttcact 191  Q
    |||||||||||||||||||||| ||| ||||    
T  16412775 aatagtacaattgtacaaccacaactccact 16412745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 72 - 184
Target Start/End: Original strand, 7487934 - 7488043
Alignment:
Q  72 agaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatccacttaaggagtgcaaagaaaggacaatagtacaat 171  Q
    |||||||||| || ||| ||||||  |||| ||||||||| || |||| ||||||||||||||||||| || ||| ||| | |||||| ||||||||||     
T  7487934 agaaggaataaaa-cctggagcaatgactaattcagaggattttgaaggcattggatgcttatccactgaa-gagcgcaga-aaaggaaaatagtacaac 7488030  T
Q  172 tgtacaaccacta 184  Q
    |||||||||||||    
T  7488031 tgtacaaccacta 7488043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 68 - 181
Target Start/End: Complemental strand, 16412128 - 16412015
Alignment:
Q  68 ttgcagaaggaata-gaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatccacttaag-gagtgcaaagaaaggacaatag 165  Q
    |||||||||||||| ||||||| ||||||| |||||||||||| ||||  ||| |||||||||||||| |  | ||| | || | |  ||||||||||||    
T  16412128 ttgcagaaggaataagaagcctggagcaacgactatttcagagaaattgaaaggcattggatgcttattctttgaagagcgttcga--aaaggacaatag 16412031  T
Q  166 tacaattgtacaacca 181  Q
    ||||||||||||||||    
T  16412030 tacaattgtacaacca 16412015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 227
Target Start/End: Original strand, 12222462 - 12222624
Alignment:
Q  55 tgaagacacaagtttgcagaaggaat-agaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatccacttaaggagtgcaaag 153  Q
    ||||||||||| | |||| ||||||| ||||| |||||||||||| |||| | || |||||||||| ||||||||||||||||   ||||        |     
T  12222462 tgaagacacaaatatgcaaaaggaattagaagactagagcaacaaatatt-ctgaagaattagaaggcattggatgcttatcc---taag--------aa 12222549  T
Q  154 aaaggacaatagtacaattgtacaaccactacttcactcttgtatgcgcatagtac-tgctacaactgtgtctct 227  Q
    |||||||| |||||||||||||||||||||||| || | ||   ||||||||||||  ||||||| |||||||||    
T  12222550 aaaggacagtagtacaattgtacaaccactactccaatatttcttgcgcatagtacaagctacaattgtgtctct 12222624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 57 - 138
Target Start/End: Original strand, 2501080 - 2501161
Alignment:
Q  57 aagacacaagtttgcagaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatccac 138  Q
    ||||||||| | || |||||||||||||| || ||||||| | |||||| || |||||||||| ||||| || |||||||||    
T  2501080 aagacacaaatatgtagaaggaatagaagactggagcaacgaatatttctgaagaattagaaggcattgaattcttatccac 2501161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 191
Target Start/End: Complemental strand, 25807465 - 25807395
Alignment:
Q  121 cattggatgcttatccacttaaggagtgcaaagaaaggacaatagtacaattgtacaaccactacttcact 191  Q
    ||||||||  ||||||||| ||| ||  || || ||||| |||||||||||||||||||||||||| ||||    
T  25807465 cattggatatttatccactgaagaaggacagagcaaggataatagtacaattgtacaaccactactccact 25807395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0758 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0758
Description:

Target: scaffold0758; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 55 - 191
Target Start/End: Complemental strand, 4419 - 4284
Alignment:
Q  55 tgaagacacaagtttgcagaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatccacttaaggagtgcaaaga 154  Q
    |||| ||||||| || ||||||||||| |||||| ||||||| |||||||||||||||||||||| |||| |||||||||||||| || ||  |||   |    
T  4419 tgaaaacacaagatttcagaaggaataaaagcctggagcaacgactatttcagaggaattagaaggcatttgatgcttatccactgaa-gaacgcaggaa 4321  T
Q  155 aaggacaatagtacaattgtacaaccactacttcact 191  Q
    || ||||||||||||||||||||||||||||| ||||    
T  4320 aatgacaatagtacaattgtacaaccactactccact 4284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 55 - 193
Target Start/End: Original strand, 21683124 - 21683260
Alignment:
Q  55 tgaagacacaagtttgcagaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatccacttaaggagtgcaaaga 154  Q
    |||||||||||| |||||||||||||||||| ||  |||||| ||||||||| |||||||||||| ||||||||||||||||| | || ||| |||   |    
T  21683124 tgaagacacaagattgcagaaggaatagaagtctgaagcaacgactatttcaaaggaattagaaggcattggatgcttatccagtgaa-gagcgcaggaa 21683222  T
Q  155 aaggacaatagtacaattgtacaaccactacttcactct 193  Q
    |||||| |||||||||||||| |||||||||| ||||||    
T  21683223 aaggac-atagtacaattgtataaccactactccactct 21683260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 72 - 186
Target Start/End: Original strand, 26280007 - 26280119
Alignment:
Q  72 agaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatccacttaaggagtgcaaagaaaggacaatagtacaat 171  Q
    ||||||||||||||||| ||||||| ||||||||||| |||||||||| ||||||||||||||||| || | |||||||   ||||||| ||||||||||    
T  26280007 agaaggaatagaagcctggagcaacgactatttcagatgaattagaagtcattggatgcttatcca-ttgaagagtgcatgaaaaggac-atagtacaat 26280104  T
Q  172 tgtacaaccactact 186  Q
    |||||||||||||||    
T  26280105 tgtacaaccactact 26280119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 55 - 159
Target Start/End: Original strand, 16478659 - 16478763
Alignment:
Q  55 tgaagacacaagtttgcagaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatccacttaaggagtgcaaaga 154  Q
    |||||||||||| ||||||||| |||| || ||| ||||||| |||||||||||| ||||||||| ||||||||||||||| ||| |||||| |||||||    
T  16478659 tgaagacacaagattgcagaagaaatataaacctggagcaacgactatttcagagaaattagaaggcattggatgcttatctactgaaggagcgcaaaga 16478758  T
Q  155 aagga 159  Q
    |||||    
T  16478759 aagga 16478763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 53 - 194
Target Start/End: Original strand, 18517099 - 18517238
Alignment:
Q  53 tctgaagacacaagtttgcagaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatccacttaaggagtgcaaa 152  Q
    ||||||||||||   || |||||||||||||||||| ||||||| ||||||||| |||||||||||| |||||||||||||  || || | ||| ||||     
T  18517099 tctgaagacacatcattacagaaggaatagaagcctggagcaacgactatttcaaaggaattagaaggcattggatgcttaatca-ttgaagagcgcaag 18517197  T
Q  153 gaaaggacaatagtacaattgtacaaccactacttcactctt 194  Q
     ||||||| |||||||||||||||||||| |||| |||||||    
T  18517198 aaaaggac-atagtacaattgtacaaccattactccactctt 18517238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 68 - 185
Target Start/End: Complemental strand, 23054503 - 23054388
Alignment:
Q  68 ttgcagaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatccacttaaggagtgcaaagaaaggacaatagta 167  Q
    ||||||||||||||||||||| ||||||| |||||||||||| ||||||||| ||||||||| ||||||| | || ||| |||   ||||||| ||||||    
T  23054503 ttgcagaaggaatagaagcctggagcaacgactatttcagagaaattagaaggcattggatgtttatccaatgaa-gagcgcaggaaaaggac-atagta 23054406  T
Q  168 caattgtacaaccactac 185  Q
    ||||||||||||||||||    
T  23054405 caattgtacaaccactac 23054388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 56 - 191
Target Start/End: Complemental strand, 26703704 - 26703570
Alignment:
Q  56 gaagacacaagtttgcagaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatccacttaaggagtgcaaagaa 155  Q
    |||||||||||||||||||||||| |||||||| || | |   ||||||||||| ||||||||||||||| ||||||||||||| || ||| ||| | ||    
T  26703704 gaagacacaagtttgcagaaggaacagaagcctggaacgatggctatttcagagaaattagaagacattgtatgcttatccactgaa-gagcgcagaaaa 26703606  T
Q  156 aggacaatagtacaattgtacaaccactacttcact 191  Q
    |||| |||| |||| ||||||||||| |||| ||||    
T  26703605 aggataatactacatttgtacaaccattactccact 26703570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 68 - 192
Target Start/End: Complemental strand, 16870100 - 16869977
Alignment:
Q  68 ttgcagaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatccacttaaggagtgca-aagaaaggacaatagt 166  Q
    |||||||| ||||  |||||| ||||||   ||||||||||||||||||||| |||||||||||||||||| ||| ||| |||  | ||||||| |||||    
T  16870100 ttgcagaatgaatgaaagcctggagcaattgctatttcagaggaattagaaggcattggatgcttatccac-taaagagcgcaggaaaaaggac-atagt 16870003  T
Q  167 acaattgtacaaccactacttcactc 192  Q
    ||||||||||||||| |||| |||||    
T  16870002 acaattgtacaaccattactccactc 16869977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 58 - 231
Target Start/End: Complemental strand, 8698991 - 8698817
Alignment:
Q  58 agacacaagtttgcagaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatccacttaaggagtgcaaagaaag 157  Q
    |||||||||  ||||||||||||| ||  || |||||| |||||||||| |||||  ||||| | |||||||||||||||   |   ||  ||  | |||    
T  8698991 agacacaagagtgcagaaggaataaaacacttgagcaataactatttcaaaggaagcagaaggctttggatgcttatccaaagagaaaggacagtggaag 8698892  T
Q  158 gacaatagtacaattgtacaaccactacttcactcttgtatgcgcatagtac-tgctacaactgtgtctctgctc 231  Q
    ||||||||||||||||||||||||||||| ||   ||  |||| ||||||||  |||||||||||||||||||||    
T  8698891 gacaatagtacaattgtacaaccactactccaacatttcatgcacatagtacaagctacaactgtgtctctgctc 8698817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 68 - 194
Target Start/End: Original strand, 18129964 - 18130087
Alignment:
Q  68 ttgcagaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatccacttaaggagtgcaaagaaaggacaatagta 167  Q
    |||||||||||||| |||||| ||| ||   |||||||||||||||||||||  |||||||||||||||||| || ||| | |   ||||||| | ||||    
T  18129964 ttgcagaaggaataaaagcctggagtaagg-ctatttcagaggaattagaaggtattggatgcttatccactgaa-gagcgtatgaaaaggac-acagta 18130060  T
Q  168 caattgtacaaccactacttcactctt 194  Q
    ||||||||||||||||||| |||||||    
T  18130061 caattgtacaaccactactccactctt 18130087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 68 - 183
Target Start/End: Complemental strand, 9346888 - 9346778
Alignment:
Q  68 ttgcagaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatccacttaaggagtgcaaagaaaggacaatagta 167  Q
    ||||||||| ||| ||||||| ||||||| ||||||||| |  ||||||||| ||||||||||||||||||| ||| || ||| | ||||||||  ||||    
T  9346888 ttgcagaagaaatggaagcctggagcaacgactatttcaaa--aattagaaggcattggatgcttatccactaaag-agcgcata-aaaggacac-agta 9346794  T
Q  168 caattgtacaaccact 183  Q
    ||||||||||||||||    
T  9346793 caattgtacaaccact 9346778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 74 - 182
Target Start/End: Original strand, 20109897 - 20110003
Alignment:
Q  74 aaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatccacttaaggagtgcaaagaaaggacaatagtacaattg 173  Q
    ||||||||||||| | ||||||| ||||||| | |||||||||||| |||||||| || ||| | || | ||||||||  ||||||| ||||||||||||    
T  20109897 aaggaatagaagcatggagcaacgactattttaaaggaattagaaggcattggatactcatcta-ttgaagagtgcaagaaaaggac-atagtacaattg 20109994  T
Q  174 tacaaccac 182  Q
    |||||||||    
T  20109995 tacaaccac 20110003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 72 - 134
Target Start/End: Complemental strand, 20909540 - 20909478
Alignment:
Q  72 agaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttat 134  Q
    ||||||||||||||||| ||||||| || ||||||||||| || ||||||||| |||||||||    
T  20909540 agaaggaatagaagcctggagcaacgacgatttcagaggatttggaagacattagatgcttat 20909478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 57 - 137
Target Start/End: Complemental strand, 31359458 - 31359378
Alignment:
Q  57 aagacacaagtttgcagaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatcca 137  Q
    ||||||||| | ||||||||||||||||| ||   ||||||| |||||| || |||||||||| | |||||||||||||||    
T  31359458 aagacacaaatatgcagaaggaatagaagactgatgcaacaaatatttctgaagaattagaaggctttggatgcttatcca 31359378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 134
Target Start/End: Original strand, 2819261 - 2819336
Alignment:
Q  59 gacacaagtttgcagaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttat 134  Q
    ||||||||  || |||| ||||||||| || |||||||  ||||||||||||||||||||| |||| |||||||||    
T  2819261 gacacaagagtgaagaatgaatagaagactggagcaacggctatttcagaggaattagaaggcattagatgcttat 2819336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 68 - 134
Target Start/End: Complemental strand, 17018715 - 17018650
Alignment:
Q  68 ttgcagaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttat 134  Q
    ||||||||| ||||||||| | |||||||||||| |||||||||||| |||  ||||||||||||||    
T  17018715 ttgcagaag-aatagaagcttggagcaacaactacttcagaggaattggaaagcattggatgcttat 17018650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 114
Target Start/End: Original strand, 24227929 - 24227973
Alignment:
Q  70 gcagaaggaatagaagcctagagcaacaactatttcagaggaatt 114  Q
    ||||||||||| ||||||| ||||||| |||| ||||||||||||    
T  24227929 gcagaaggaattgaagcctggagcaacgactaattcagaggaatt 24227973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 55 - 191
Target Start/End: Complemental strand, 8231 - 8098
Alignment:
Q  55 tgaagacacaagtttgcagaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatccacttaaggagtgcaaaga 154  Q
    ||||||||||||||||||||||||||||    ||  |||||| | |||||||||||||||||||| ||||||||| |||||||||  || ||  || |||    
T  8231 tgaagacacaagtttgcagaaggaatagt---ctgaagcaacgattatttcagaggaattagaaggcattggatgattatccactggagaaggtcataga 8135  T
Q  155 aaggacaatagtacaattgtacaaccactacttcact 191  Q
    ||||| ||||||| |||||||||||||||||| ||||    
T  8134 aaggataatagtataattgtacaaccactactccact 8098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 68 - 193
Target Start/End: Complemental strand, 31760 - 31637
Alignment:
Q  68 ttgcagaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatccacttaaggagtgcaaagaaaggacaatagta 167  Q
    ||||||||||||||||||||| ||||||| ||||||| | ||||||||||||  |||||||||||||||||| || ||| |||   ||||||  ||||||    
T  31760 ttgcagaaggaatagaagcctggagcaacgactattttaaaggaattagaaggaattggatgcttatccactgaa-gagcgcatgaaaagga-tatagta 31663  T
Q  168 caattgtacaaccactacttcactct 193  Q
    ||||||||||||||||||| ||||||    
T  31662 caattgtacaaccactactccactct 31637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 68 - 183
Target Start/End: Complemental strand, 20204 - 20091
Alignment:
Q  68 ttgcagaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatccacttaaggagtgcaaagaaaggacaatagta 167  Q
    ||||||||||||| ||||||||||||||| ||||||||||| |||||||||  ||||||||||||||||| || | ||| |||   ||||||| ||||||    
T  20204 ttgcagaaggaatggaagcctagagcaacgactatttcagaagaattagaaagcattggatgcttatcca-ttgaagagcgcaggaaaaggac-atagta 20107  T
Q  168 caattgtacaaccact 183  Q
    ||||||||||||||||    
T  20106 caattgtacaaccact 20091  T

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Target: scaffold0772 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0772
Description:

Target: scaffold0772; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 68 - 185
Target Start/End: Original strand, 854 - 969
Alignment:
Q  68 ttgcagaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatccacttaaggagtgcaaagaaaggacaatagta 167  Q
    ||||| ||||||| ||||| | |||||||||||||||||||||| ||||||||||||||||||||||||||| || |||  ||   ||||| | ||||||    
T  854 ttgcataaggaatggaagcttggagcaacaactatttcagaggatttagaagacattggatgcttatccactgaa-gagcacatgaaaagggc-atagta 951  T
Q  168 caattgtacaaccactac 185  Q
    ||||||||||||||||||    
T  952 caattgtacaaccactac 969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0622 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0622
Description:

Target: scaffold0622; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 72 - 191
Target Start/End: Original strand, 3381 - 3498
Alignment:
Q  72 agaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatccacttaaggagtgcaaagaaaggacaatagtacaat 171  Q
    ||||||||||||||||||||||||   ||||||||||||||||||||| |||| |||||||||||||| |||| |  | | |||| ||  ||||||||||    
T  3381 agaaggaatagaagcctagagcaatggctatttcagaggaattagaaggcattcgatgcttatccactaaagg-gaac-aggaaaagaacatagtacaat 3478  T
Q  172 tgtacaaccactacttcact 191  Q
    ||||||||||||||| ||||    
T  3479 tgtacaaccactactccact 3498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0683 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold0683
Description:

Target: scaffold0683; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 57 - 170
Target Start/End: Complemental strand, 523 - 411
Alignment:
Q  57 aagacacaagtttgcagaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatccacttaaggagtgcaaagaaa 156  Q
    |||||| ||||||| |||||||||| |||||||||||||| || ||||||||||||||||||| ||||| || ||||| ||| ||| ||| ||| | |||    
T  523 aagacataagtttggagaaggaataaaagcctagagcaacgacaatttcagaggaattagaaggcattgaatacttattcac-taaagagcgcataaaaa 425  T
Q  157 ggacaatagtacaa 170  Q
    ||||||| ||||||    
T  424 ggacaattgtacaa 411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0351 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold0351
Description:

Target: scaffold0351; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 49 - 192
Target Start/End: Original strand, 9211 - 9349
Alignment:
Q  49 agagtctgaagacacaagtttgcagaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatccacttaaggagtg 148  Q
    ||||| |||||||||||| |||||||||||||| ||||||| ||||||   |||||| ||||||||||||| ||||||||||   |||||| || ||| |    
T  9211 agagtatgaagacacaagattgcagaaggaataaaagcctaaagcaacggatatttctgaggaattagaaggcattggatgc---tccactgaa-gagcg 9306  T
Q  149 caaagaaaggacaatagtacaattgtacaaccactacttcactc 192  Q
    ||   ||||||| ||||||||||| ||||||||||||| |||||    
T  9307 caggaaaaggac-atagtacaattttacaaccactactccactc 9349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 55 - 192
Target Start/End: Complemental strand, 112353 - 112221
Alignment:
Q  55 tgaagacacaagtttgcagaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatccacttaaggagtgcaaaga 154  Q
    |||||||||||| |||||||||||||| ||||||| ||||||   |||||| ||||||||||||| ||||||||||   |||||| || ||| |||   |    
T  112353 tgaagacacaagattgcagaaggaataaaagcctaaagcaacggatatttctgaggaattagaaggcattggatgc---tccactgaa-gagcgcaggaa 112258  T
Q  155 aaggacaatagtacaattgtacaaccactacttcactc 192  Q
    |||||| ||||||||||| ||||||||||||| |||||    
T  112257 aaggac-atagtacaattttacaaccactactccactc 112221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 74 - 172
Target Start/End: Original strand, 16400 - 16498
Alignment:
Q  74 aaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatccacttaaggagtgcaaagaaaggacaatagtacaatt 172  Q
    |||||||||||| ||  |||||| ||||||| |||| ||||||||| ||||||||||||| ||||| ||| |   ||||||||||||||||||||||||    
T  16400 aaggaatagaagactgaagcaacgactattttagagaaattagaaggcattggatgcttacccactgaagaatgacaaagaaaggacaatagtacaatt 16498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1107 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold1107
Description:

Target: scaffold1107; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 73 - 178
Target Start/End: Original strand, 2339 - 2444
Alignment:
Q  73 gaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatccacttaaggagtgcaaagaaaggacaatagtacaatt 172  Q
    ||||||||| ||| ||  |||||| ||||||| |||||||||||||| ||||||||||||| ||||| ||| |   || |||||||||||||||||||||    
T  2339 gaaggaatataagactgaagcaacgactattttagaggaattagaaggcattggatgcttacccactgaagaatgacagagaaaggacaatagtacaatt 2438  T
Q  173 gtacaa 178  Q
     |||||    
T  2439 atacaa 2444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 64 - 192
Target Start/End: Original strand, 1808 - 1935
Alignment:
Q  64 aagtttgcagaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatccacttaaggagtgcaaagaaaggacaat 163  Q
    |||| ||||||||||||| ||||||| || ||  ||||||||||||||| |||||| |||| ||| ||||||||| ||| ||| |||   |||||||| |    
T  1808 aagtctgcagaaggaataaaagcctaaagaaatgactatttcagaggaaatagaaggcattagatacttatccac-taaagagcgcatgaaaaggacact 1906  T
Q  164 agtacaattgtacaaccactacttcactc 192  Q
    |||||| ||||| |||||||||| |||||    
T  1907 agtacatttgtataaccactactccactc 1935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 55 - 191
Target Start/End: Original strand, 3983 - 4117
Alignment:
Q  55 tgaagacacaagtttgcagaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatccacttaaggagtgcaaaga 154  Q
    |||||||||||| ||||||||||||||||||  | ||| |||  |||||||| ||||||||||||  ||| |||| ||||||  || | ||| ||| | |    
T  3983 tgaagacacaagattgcagaaggaatagaagtttggaggaacggctatttcataggaattagaaggaatttgatgtttatcc-tttgaagagcgcagaaa 4081  T
Q  155 aaggacaatagtacaattgtacaaccactacttcact 191  Q
    |||||| ||||||||||||||||||||||||| ||||    
T  4082 aaggac-atagtacaattgtacaaccactactccact 4117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0522 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: scaffold0522
Description:

Target: scaffold0522; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 72 - 137
Target Start/End: Original strand, 4245 - 4310
Alignment:
Q  72 agaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatcca 137  Q
    ||||||||| |||||||||| |||| ||||||||||| |||||||||  |||||||||||||||||    
T  4245 agaaggaatggaagcctagaacaacgactatttcagaagaattagaaagcattggatgcttatcca 4310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0522; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 72 - 137
Target Start/End: Original strand, 11528 - 11593
Alignment:
Q  72 agaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatcca 137  Q
    ||||||||| |||||||||| |||| ||||||||||| |||||||||  |||||||||||||||||    
T  11528 agaaggaatggaagcctagaacaacgactatttcagaagaattagaaagcattggatgcttatcca 11593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0490 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0490
Description:

Target: scaffold0490; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 68 - 137
Target Start/End: Complemental strand, 7460 - 7391
Alignment:
Q  68 ttgcagaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatcca 137  Q
    ||||||||||||| |||||||||| || | ||||||||||| |||||||||  |||||||||||||||||    
T  7460 ttgcagaaggaatggaagcctagaacagcgactatttcagaagaattagaaagcattggatgcttatcca 7391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0364 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0364
Description:

Target: scaffold0364; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 68 - 185
Target Start/End: Original strand, 10380 - 10495
Alignment:
Q  68 ttgcagaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatccacttaaggagtgcaaagaaaggacaatagta 167  Q
    |||| ||||||||  ||||| |||||||| |||||||||||| ||||||||| ||||||||| ||||||||| ||  || |||   ||||||  ||||||    
T  10380 ttgcggaaggaatgcaagccgagagcaacgactatttcagagaaattagaaggcattggatgtttatccactgaa-aagcgcaggaaaagga-tatagta 10477  T
Q  168 caattgtacaaccactac 185  Q
    ||||||||||||||||||    
T  10478 caattgtacaaccactac 10495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 72 - 137
Target Start/End: Complemental strand, 59690 - 59625
Alignment:
Q  72 agaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatcca 137  Q
    ||||||||| ||||||| ||||||| ||||||| |||||||||||||| ||||||||| |||||||    
T  59690 agaaggaatggaagcctggagcaacgactattttagaggaattagaaggcattggatggttatcca 59625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 61 - 191
Target Start/End: Complemental strand, 1577 - 1457
Alignment:
Q  61 cacaagtttgcagaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatccacttaaggagtgcaaagaaaggac 160  Q
    |||||||||| ||||||||||||||||  ||||||| ||||||||||||||          |||||||||||||||| | ||| |   ||  ||||||||    
T  1577 cacaagtttgtagaaggaatagaagccaggagcaacgactatttcagagga----------attggatgcttatccattgaagaatgtcagtgaaaggac 1488  T
Q  161 aatagtacaattgtacaaccactacttcact 191  Q
    |||||||||||||||||||||| ||| ||||    
T  1487 aatagtacaattgtacaaccacaactccact 1457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 68 - 181
Target Start/End: Complemental strand, 840 - 727
Alignment:
Q  68 ttgcagaaggaata-gaagcctagagcaacaactatttcagaggaattagaagacattggatgcttatccacttaag-gagtgcaaagaaaggacaatag 165  Q
    |||||||||||||| ||||||| ||||||| |||||||||||| ||||  ||| |||||||||||||| |  | ||| | || | |  ||||||||||||    
T  840 ttgcagaaggaataagaagcctggagcaacgactatttcagagaaattgaaaggcattggatgcttattctttgaagagcgttcga--aaaggacaatag 743  T
Q  166 tacaattgtacaacca 181  Q
    ||||||||||||||||    
T  742 tacaattgtacaacca 727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 67 - 127
Target Start/End: Original strand, 416023 - 416083
Alignment:
Q  67 tttgcagaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattgga 127  Q
    |||| ||||||||||||||||| ||||||| ||||||||| | |||||||||| |||||||    
T  416023 tttgaagaaggaatagaagcctggagcaacgactatttcaaatgaattagaaggcattgga 416083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 68 - 134
Target Start/End: Complemental strand, 29932 - 29867
Alignment:
Q  68 ttgcagaaggaatagaagcctagagcaacaactatttcagaggaattagaagacattggatgcttat 134  Q
    ||||||||| ||||||||||| ||||||| |||| |||||| ||||| |||| ||||||||||||||    
T  29932 ttgcagaag-aatagaagcctggagcaacgactaattcagatgaattggaaggcattggatgcttat 29867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1026 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold1026
Description:

Target: scaffold1026; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 91 - 182
Target Start/End: Complemental strand, 3080 - 2991
Alignment:
Q  91 agcaacaactatttcagaggaattagaagacattggatgcttatccacttaaggagtgcaaagaaaggacaatagtacaattgtacaaccac 182  Q
    |||||| ||| ||| |||||||||||||  |||||||||||||||||| ||| |||  |||  ||||||| ||||| |||||||||||||||    
T  3080 agcaacgactgttttagaggaattagaatgcattggatgcttatccac-taaagagctcaagaaaaggac-atagtgcaattgtacaaccac 2991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 184
Target Start/End: Complemental strand, 78449 - 78419
Alignment:
Q  154 aaaggacaatagtacaattgtacaaccacta 184  Q
    |||||||||||||||||||||||||||||||    
T  78449 aaaggacaatagtacaattgtacaaccacta 78419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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