View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11559_low_2 (Length: 547)
Name: NF11559_low_2
Description: NF11559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11559_low_2 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 428; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 7 - 450
Target Start/End: Complemental strand, 36948325 - 36947882
Alignment:
| Q |
7 |
tcaatgtcataaccagaaacacatttgccaaccaagtaagttcactgataacagtatagaggccagcaatgaaagccaaagacagtgagatgagagcgat |
106 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36948325 |
tcaatgtcataaccagaaacacatttgccaaccaagtaagttcactgataacagtgtagaggccagcaatgaaagccaaagacagtgagatgagagcgat |
36948226 |
T |
|
| Q |
107 |
tccaagaattggcataacaattttcagagagaatttcaccaattcagttaatccaagtgttgcccaaaagagtatgataatagaactaatggaactgaac |
206 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36948225 |
tccaagaattggcataacaattttcagagagaatttcaccaattcagttaatccaagtgttgcccaaaagagtatgataatagaactaatggaactgaat |
36948126 |
T |
|
| Q |
207 |
aatgatattgtgatgaagataatgaatgcttgaaacattgcatgacataggttgtttgcttttccatctgcttcacctggaacagcaaaacatgctgcta |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36948125 |
aatgatattgtgatgaagataatgaatgcttgaaacattgcatgacataggttgtttgcttttccatctgcttcacctggaacagcaaaacatgctgcta |
36948026 |
T |
|
| Q |
307 |
ctgatgcagtgattataagggttgaaaccaatatcagtgtctctaccatgtctttgaatgtggggttggggtcttctgccgataaatattgtggtacaat |
406 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
36948025 |
ctgatgcagtgattataagggttgaaaccaatatcagtgtctctaccatgtctttaaatgtggggttggggacttctgccgataaatattgtggtacaat |
36947926 |
T |
|
| Q |
407 |
gttgttggggactttttctgctctgtccctatatctatccaaac |
450 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36947925 |
gttgttggggactttttctgctctgtccctatatctatccaaac |
36947882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 17 - 352
Target Start/End: Original strand, 37079404 - 37079739
Alignment:
| Q |
17 |
aaccagaaacacatttgccaaccaagtaagttcactgataacagtatagaggccagcaatgaaagccaaagacagtgagatgagagcgattccaagaatt |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| || ||||||||||| ||||||| ||||||||||||||||| | |
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|
| T |
37079404 |
aaccagaaacacatttgccaaccaagtaagttcactgataacagtgtagagtccagccataaaagccaaagatagtgagacgagagcgattccaagaagt |
37079503 |
T |
|
| Q |
117 |
ggcataacaattttcagagagaatttcaccaattcagttaatccaagtgttgcccaaaagagtatgataatagaactaatggaactgaacaatgatattg |
216 |
Q |
| |
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||||| ||||||||||||||||| |||||||||||| || |||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
37079504 |
ggcatcacaattttcagagagaaagtcaccaattcaggtattccaagctttgcccaaaagagtatgatagtagaactaatggaactgaacaatgatattg |
37079603 |
T |
|
| Q |
217 |
tgatgaagataatgaatgcttgaaacattgcatgacataggttgtttgcttttccatctgcttcacctggaacagcaaaacatgctgctactgatgcagt |
316 |
Q |
| |
|
||||||| |||||||| | || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
37079604 |
tgatgaatataatgaaaacatggaacattgcatgacataggttgtttgcttttccatccgcttcacctggaacagcaaaacatgctgctactgaagcagt |
37079703 |
T |
|
| Q |
317 |
gattataagggttgaaaccaatatcagtgtctctac |
352 |
Q |
| |
|
|||||||||||||||||||||| | ||||||||||| |
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|
| T |
37079704 |
gattataagggttgaaaccaatgtgagtgtctctac |
37079739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 33 - 359
Target Start/End: Original strand, 37069660 - 37069986
Alignment:
| Q |
33 |
gccaaccaagtaagttcactgataacagtatagaggccagcaatgaaagccaaagacagtgagatgagagcgattccaagaattggcataacaattttca |
132 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |||| |||||||||||||| || || ||||||||| ||||||||| ||||| || ||||||| |
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|
| T |
37069660 |
gccaaccaagtaagttcactgataacagtgtagagaccagtcatgaaagccaaagatagagaaatgagagcggttccaagaagtggcaacacgattttca |
37069759 |
T |
|
| Q |
133 |
gagagaatttcaccaattcagttaatccaagtgttgcccaaaagagtatgataatagaactaatggaactgaacaatgatattgtgatgaagataatgaa |
232 |
Q |
| |
|
| ||||| ||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37069760 |
gtgagaaagtcaccaattcagttaatccaagttttgccaaaaagagtatgatagtagaactaatggaactgaacaatgatattgtgatgaagataatgaa |
37069859 |
T |
|
| Q |
233 |
tgcttgaaacattgcatgacataggttgtttgcttttccatctgcttcacctggaacagcaaaacatgctgctactgatgcagtgattataagggttgaa |
332 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |
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|
| T |
37069860 |
agcttggaacattgcatgacataggttgtttgcttttccatccgcttcacctggaacagcaaaacatgctgctactgaagcagtgattataagtgttgaa |
37069959 |
T |
|
| Q |
333 |
accaatatcagtgtctctaccatgtct |
359 |
Q |
| |
|
|||||| | |||||||||||| ||||| |
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|
| T |
37069960 |
accaatgtgagtgtctctaccctgtct |
37069986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 14 - 334
Target Start/End: Complemental strand, 36956394 - 36956074
Alignment:
| Q |
14 |
cataaccagaaacacatttgccaaccaagtaagttcactgataacagtatagaggccagcaatgaaagccaaagacagtgagatgagagcgattccaaga |
113 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||| |||||||| || || |||||||||||||| ||||| | ||| |||||||||||||||||| |
|
|
| T |
36956394 |
cataaccagaaacacatttgccaaccaattaagttcactaataacagtgtacagaccagcaatgaaagcaaaagataatgaaatgagagcgattccaaga |
36956295 |
T |
|
| Q |
114 |
attggcataacaattttcagagagaatttcaccaattcagttaatccaagtgttgcccaaaagagtatgataatagaactaatggaactgaacaatgata |
213 |
Q |
| |
|
| |||| ||||||||| |||| || | ||||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||||| |
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|
| T |
36956294 |
agcggcacaacaattttgagagtaaaagttaccaattcagttaatccaagtgttgcccaaaagagtatgatggtagcactaattgaactgaacaatgata |
36956195 |
T |
|
| Q |
214 |
ttgtgatgaagataatgaatgcttgaaacattgcatgacataggttgtttgcttttccatctgcttcacctggaacagcaaaacatgctgctactgatgc |
313 |
Q |
| |
|
||||||||||||||||||| | || ||||||||||||||||| |||| ||||||||| |||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
36956194 |
ttgtgatgaagataatgaaaacatggaacattgcatgacatagattgtgtgcttttccttctgcttcacctggaacagctaaacatgctgctactgatgc |
36956095 |
T |
|
| Q |
314 |
agtgattataagggttgaaac |
334 |
Q |
| |
|
||||||||||| |||||||| |
|
|
| T |
36956094 |
tgtgattataagtgttgaaac |
36956074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 14 - 334
Target Start/End: Complemental strand, 36935540 - 36935220
Alignment:
| Q |
14 |
cataaccagaaacacatttgccaaccaagtaagttcactgataacagtatagaggccagcaatgaaagccaaagacagtgagatgagagcgattccaaga |
113 |
Q |
| |
|
|||||||||||||||||| | ||||| | ||||||||||||||||| ||||| ||||| |||||||||||||| | || || ||||||||||||||| |
|
|
| T |
36935540 |
cataaccagaaacacattggacaaccgacgtagttcactgataacagtgtagagaccagccatgaaagccaaagataatgcaataagagcgattccaaga |
36935441 |
T |
|
| Q |
114 |
attggcataacaattttcagagagaatttcaccaattcagttaatccaagtgttgcccaaaagagtatgataatagaactaatggaactgaacaatgata |
213 |
Q |
| |
|
| |||||||| ||||| |||| || ||| |||||||||||| |||| ||||||||||||||||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
36935440 |
agcggcataacgattttgagaggtaaagtcagcaattcagttaacccaaatgttgcccaaaagagtatgatggtagcactaatggaactgaacaatgata |
36935341 |
T |
|
| Q |
214 |
ttgtgatgaagataatgaatgcttgaaacattgcatgacataggttgtttgcttttccatctgcttcacctggaacagcaaaacatgctgctactgatgc |
313 |
Q |
| |
|
|||||||||||||||||| || |||||||||| ||||||||| |||| ||||||||| |||||||||| |||||| || ||||||||||||||||| || |
|
|
| T |
36935340 |
ctgtgatgaagataatgaaagcatgaaacattgtatgacatagattgtgtgcttttccttctgcttcacatggaacggctaaacatgctgctactgaagc |
36935241 |
T |
|
| Q |
314 |
agtgattataagggttgaaac |
334 |
Q |
| |
|
|||||||||||| |||||||| |
|
|
| T |
36935240 |
agtgattataagtgttgaaac |
36935220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 284 - 361
Target Start/End: Complemental strand, 36971718 - 36971641
Alignment:
| Q |
284 |
tggaacagcaaaacatgctgctactgatgcagtgattataagggttgaaaccaatatcagtgtctctaccatgtcttt |
361 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
36971718 |
tggaacaccaaaacatgctgctactgatgcagtgattataagtgttgaaaccaatatcagtgtctctaccatgtcttt |
36971641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 184; Significance: 2e-99; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 7 - 334
Target Start/End: Original strand, 12493423 - 12493750
Alignment:
| Q |
7 |
tcaatgtcataaccagaaacacatttgccaaccaagtaagttcactgataacagtatagaggccagcaatgaaagccaaagacagtgagatgagagcgat |
106 |
Q |
| |
|
|||||| |||||||||| ||||||||| |||||||||||||||||| |||||||| || || | ||| |||||||||||||| | || ||||||||||| |
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|
| T |
12493423 |
tcaatgccataaccagagacacatttgacaaccaagtaagttcactaataacagtgtaaagactagccatgaaagccaaagataacgaaatgagagcgat |
12493522 |
T |
|
| Q |
107 |
tccaagaattggcataacaattttcagagagaatttcaccaattcagttaatccaagtgttgcccaaaagagtatgataatagaactaatggaactgaac |
206 |
Q |
| |
|
|||||||| ||||| || ||||| |||| || | |||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||| |
|
|
| T |
12493523 |
tccaagaagcggcatgaccattttgagagtaaaagttaccaattcagttaacccaagtgttgcccaaaagagtatgatagtagcactaatggaactgaac |
12493622 |
T |
|
| Q |
207 |
aatgatattgtgatgaagataatgaatgcttgaaacattgcatgacataggttgtttgcttttccatctgcttcacctggaacagcaaaacatgctgcta |
306 |
Q |
| |
|
|| ||||||||||||||||||||||| || || |||||||||||||||||| ||| ||||||||| |||||||||||||||||||| ||||||||||||| |
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|
| T |
12493623 |
aacgatattgtgatgaagataatgaaagcatggaacattgcatgacataggctgtgtgcttttccttctgcttcacctggaacagctaaacatgctgcta |
12493722 |
T |
|
| Q |
307 |
ctgatgcagtgattataagggttgaaac |
334 |
Q |
| |
|
|||| |||||||||||||| |||||||| |
|
|
| T |
12493723 |
ctgaagcagtgattataagtgttgaaac |
12493750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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